RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 CCDC186Q7Z3E2 898 aa22.62■■□□□ 1.21
USP48-201ENST00000308271 TBC1D2BQ9UPU7 963 aa22.62■■□□□ 1.21
USP48-201ENST00000308271 FAM83GA6ND36 823 aa22.62■■□□□ 1.21
USP48-201ENST00000308271 CDKL5O76039 1030 aa22.62■■□□□ 1.21
USP48-201ENST00000308271 F13A1P00488 732 aa22.61■■□□□ 1.21
USP48-201ENST00000308271 CCDC158Q5M9N0 1113 aa22.61■■□□□ 1.21
USP48-201ENST00000308271 EVI5LQ96CN4 794 aa22.61■■□□□ 1.21
USP48-201ENST00000308271 PPP1R9BQ96SB3 815 aa22.61■■□□□ 1.21
USP48-201ENST00000308271 NAP1L1P55209 391 aaKnown RBP22.61■■□□□ 1.21
USP48-201ENST00000308271 TAF7Q15545 349 aaPredicted RBP22.61■■□□□ 1.21
USP48-201ENST00000308271 WAPLQ7Z5K2 1190 aa22.61■■□□□ 1.21
USP48-201ENST00000308271 C8orf58Q8NAV2 365 aa22.61■■□□□ 1.21
USP48-201ENST00000308271 GBP3Q9H0R5 595 aa22.6■■□□□ 1.21
USP48-201ENST00000308271 HMGB1P09429 215 aaKnown RBP22.6■■□□□ 1.21
USP48-201ENST00000308271 TRMT2AQ8IZ69 625 aaKnown RBP22.6■■□□□ 1.21
USP48-201ENST00000308271 TRIM22Q8IYM9 498 aa22.59■■□□□ 1.21
USP48-201ENST00000308271 KDM4AO75164 1064 aa22.59■■□□□ 1.21
USP48-201ENST00000308271 SNW1Q13573 536 aaKnown RBP22.59■■□□□ 1.21
USP48-201ENST00000308271 CEP85Q6P2H3 762 aa22.58■■□□□ 1.21
USP48-201ENST00000308271 BOLA2Q9H3K6 86 aa22.58■■□□□ 1.21
USP48-201ENST00000308271 KIF21AQ7Z4S6 1674 aa22.58■■□□□ 1.21
USP48-201ENST00000308271 DNAAF4Q8WXU2 420 aa22.58■■□□□ 1.21
USP48-201ENST00000308271 NLRP2Q9NX02 1062 aa22.58■■□□□ 1.21
USP48-201ENST00000308271 U3KPZ7 1027 aaPredicted RBP22.58■■□□□ 1.21
USP48-201ENST00000308271 GTF2E1P29083 439 aaPredicted RBP22.58■■□□□ 1.2
USP48-201ENST00000308271 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.57■■□□□ 1.26e-9■■□□□ 13.6
USP48-201ENST00000308271 LMBRD1Q9NUN5 540 aa22.57■■□□□ 1.2
USP48-201ENST00000308271 ADGRL1O94910 1474 aa22.57■■□□□ 1.2
USP48-201ENST00000308271 BTBD11A6QL63 1104 aa22.57■■□□□ 1.2
USP48-201ENST00000308271 FEZ1Q99689 392 aa22.57■■□□□ 1.2
USP48-201ENST00000308271 NOL10Q9BSC4 688 aaKnown RBP22.57■■□□□ 1.2
USP48-201ENST00000308271 ANTXR1Q9H6X2 564 aa22.57■■□□□ 1.2
USP48-201ENST00000308271 ZNHIT6Q9NWK9 470 aaKnown RBP22.57■■□□□ 1.2
USP48-201ENST00000308271 FSIP1Q8NA03 581 aa22.57■■□□□ 1.2
USP48-201ENST00000308271 ZNF608Q9ULD9 1512 aaPredicted RBP22.57■■□□□ 1.2
USP48-201ENST00000308271 SYCP2Q9BX26 1530 aa22.56■■□□□ 1.2
USP48-201ENST00000308271 TOP1P11387 765 aaKnown RBP22.56■■□□□ 1.2
USP48-201ENST00000308271 PPP1R42Q7Z4L9 355 aa22.56■■□□□ 1.2
USP48-201ENST00000308271 ANO6Q4KMQ2 910 aa22.56■■□□□ 1.2
USP48-201ENST00000308271 TSPYL6Q8N831 410 aa22.56■■□□□ 1.2
USP48-201ENST00000308271 RDXP35241 583 aaKnown RBP22.56■■□□□ 1.2
USP48-201ENST00000308271 IDI1Q13907 227 aa22.56■■□□□ 1.2
USP48-201ENST00000308271 ARHGAP29Q52LW3 1261 aa22.56■■□□□ 1.2
USP48-201ENST00000308271 TTC39AQ5SRH9 613 aa22.56■■□□□ 1.2
USP48-201ENST00000308271 RHPN1Q8TCX5 695 aa22.56■■□□□ 1.2
USP48-201ENST00000308271 CCDC102AQ96A19 550 aa22.56■■□□□ 1.2
USP48-201ENST00000308271 ZSCAN16Q9H4T2 348 aaPredicted RBP22.56■■□□□ 1.2
USP48-201ENST00000308271 MAGEC2Q9UBF1 373 aaPredicted RBP22.56■■□□□ 1.2
USP48-201ENST00000308271 KIAA0556O60303 1618 aa22.56■■□□□ 1.2
USP48-201ENST00000308271 TXLNAP40222 546 aa22.55■■□□□ 1.2
USP48-201ENST00000308271 ZNF521Q96K83 1311 aa22.55■■□□□ 1.2
USP48-201ENST00000308271 KDM5BQ9UGL1 1544 aa22.55■■□□□ 1.2
USP48-201ENST00000308271 WASLO00401 505 aaPredicted RBP22.55■■□□□ 1.2
USP48-201ENST00000308271 CCDC150Q8NCX0 1101 aa22.55■■□□□ 1.2
USP48-201ENST00000308271 MYRIPQ8NFW9 859 aa22.55■■□□□ 1.2
USP48-201ENST00000308271 TIGD1Q96MW7 591 aa22.55■■□□□ 1.2
USP48-201ENST00000308271 KDM5CP41229 1560 aa22.55■■□□□ 1.2
USP48-201ENST00000308271 SAMD9Q5K651 1589 aa22.55■■□□□ 1.2
USP48-201ENST00000308271 DNM1Q05193 864 aaKnown RBP22.55■■□□□ 1.2
USP48-201ENST00000308271 AMOTL1Q8IY63 956 aa22.55■■□□□ 1.2
USP48-201ENST00000308271 PIBF1Q8WXW3 757 aa22.55■■□□□ 1.2
USP48-201ENST00000308271 HMG20BQ9P0W2 317 aa22.55■■□□□ 1.2
USP48-201ENST00000308271 RAPGEF3O95398 923 aa22.54■■□□□ 1.2
USP48-201ENST00000308271 SKILP12757 684 aa22.54■■□□□ 1.2
USP48-201ENST00000308271 TTC21BQ7Z4L5 1316 aa22.54■■□□□ 1.2
USP48-201ENST00000308271 ZNF500O60304 480 aaPredicted RBP22.54■■□□□ 1.2
USP48-201ENST00000308271 ATP8B2P98198 1209 aa22.54■■□□□ 1.2
USP48-201ENST00000308271 EPB41L2O43491 1005 aaKnown RBP22.53■■□□□ 1.2
USP48-201ENST00000308271 DACT1Q9NYF0 836 aa22.53■■□□□ 1.2
USP48-201ENST00000308271 POLR3GO15318 223 aaPredicted RBP22.53■■□□□ 1.2
USP48-201ENST00000308271 CASQ1P31415 396 aa22.53■■□□□ 1.2
USP48-201ENST00000308271 TMC6Q7Z403 805 aa22.53■■□□□ 1.2
USP48-201ENST00000308271 USP8P40818 1118 aa22.53■■□□□ 1.2
USP48-201ENST00000308271 C8orf76Q96K31 380 aa22.53■■□□□ 1.2
USP48-201ENST00000308271 TYRO3Q06418 890 aa22.52■■□□□ 1.2
USP48-201ENST00000308271 CCAR1Q8IX12 1150 aaKnown RBP22.52■■□□□ 1.2
USP48-201ENST00000308271 SLC3A2P08195 630 aaKnown RBP22.52■■□□□ 1.2
USP48-201ENST00000308271 GOLGA6L9A6NEM1 432 aa22.52■■□□□ 1.19
USP48-201ENST00000308271 GTF2F1P35269 517 aaKnown RBP eCLIP22.52■■□□□ 1.191e-15■■□□□ 11.4
USP48-201ENST00000308271 IMMTQ16891 758 aaKnown RBP22.52■■□□□ 1.19
USP48-201ENST00000308271 CCDC8Q9H0W5 538 aaPredicted RBP22.52■■□□□ 1.19
USP48-201ENST00000308271 PIK3R4Q99570 1358 aa22.51■■□□□ 1.19
USP48-201ENST00000308271 GAS2L3Q86XJ1 694 aa22.51■■□□□ 1.19
USP48-201ENST00000308271 NPHP3Q7Z494 1330 aa22.51■■□□□ 1.19
USP48-201ENST00000308271 KIAA0754O94854 1291 aa22.51■■□□□ 1.19
USP48-201ENST00000308271 ZSCAN25Q6NSZ9 544 aa22.51■■□□□ 1.19
USP48-201ENST00000308271 DEF6Q9H4E7 631 aa22.51■■□□□ 1.19
USP48-201ENST00000308271 NECAB1Q8N987 351 aa22.5■■□□□ 1.19
USP48-201ENST00000308271 OGFRQ9NZT2 677 aa22.5■■□□□ 1.19
USP48-201ENST00000308271 TUBB4AP04350 444 aa22.5■■□□□ 1.19
USP48-201ENST00000308271 KIF5CO60282 957 aa22.5■■□□□ 1.19
USP48-201ENST00000308271 CHMLP26374 656 aa22.5■■□□□ 1.19
USP48-201ENST00000308271 JAKMIP3Q5VZ66 844 aa22.5■■□□□ 1.19
USP48-201ENST00000308271 MAGI3Q5TCQ9 1506 aa22.5■■□□□ 1.19
USP48-201ENST00000308271 IQCEQ6IPM2 695 aa22.5■■□□□ 1.19
USP48-201ENST00000308271 VPS37DQ86XT2 251 aa22.5■■□□□ 1.19
USP48-201ENST00000308271 POLKQ9UBT6 870 aa22.5■■□□□ 1.19
USP48-201ENST00000308271 PLCH2O75038 1416 aa22.49■■□□□ 1.19
USP48-201ENST00000308271 CEP126Q9P2H0 1117 aa22.49■■□□□ 1.19
USP48-201ENST00000308271 KIF20AO95235 890 aa22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms