RNA–Protein interactions for RNA: ENST00000302516.9

SF3B3-201, Transcript of splicing factor 3b subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B3, Length 9,720 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-201ENST00000302516 A0A087WZG4 1122 aa8.85□□□□□ -0.99
SF3B3-201ENST00000302516 TMPOP42166 694 aaKnown RBP8.85□□□□□ -0.99
SF3B3-201ENST00000302516 IFI16Q16666 785 aaKnown RBP8.85□□□□□ -0.99
SF3B3-201ENST00000302516 NUP133Q8WUM0 1156 aa8.85□□□□□ -0.99
SF3B3-201ENST00000302516 POGZQ7Z3K3 1410 aa8.85□□□□□ -0.99
SF3B3-201ENST00000302516 NUP88Q99567 741 aaPredicted RBP8.85□□□□□ -0.99
SF3B3-201ENST00000302516 SNW1Q13573 536 aaKnown RBP8.85□□□□□ -0.99
SF3B3-201ENST00000302516 GNAT3A8MTJ3 354 aa8.85□□□□□ -0.99
SF3B3-201ENST00000302516 AIDAQ96BJ3 306 aa8.85□□□□□ -0.99
SF3B3-201ENST00000302516 C8orf76Q96K31 380 aa8.85□□□□□ -0.99
SF3B3-201ENST00000302516 BTBD11A6QL63 1104 aa8.84□□□□□ -0.99
SF3B3-201ENST00000302516 TMEM266Q2M3C6 531 aa8.84□□□□□ -0.99
SF3B3-201ENST00000302516 SULT6B1Q6IMI4 303 aa8.84□□□□□ -0.99
SF3B3-201ENST00000302516 PPP4R3BQ5MIZ7 849 aa8.84□□□□□ -0.99
SF3B3-201ENST00000302516 ZNF530Q6P9A1 599 aaPredicted RBP8.84□□□□□ -0.99
SF3B3-201ENST00000302516 PPM1EQ8WY54 764 aa8.84□□□□□ -0.99
SF3B3-201ENST00000302516 CTAGE1Q96RT6 745 aa8.84□□□□□ -0.99
SF3B3-201ENST00000302516 ZSCAN16Q9H4T2 348 aaPredicted RBP8.84□□□□□ -0.99
SF3B3-201ENST00000302516 CABP4P57796 275 aa8.84□□□□□ -0.99
SF3B3-201ENST00000302516 STMN4Q9H169 189 aaPredicted RBP8.84□□□□□ -0.99
SF3B3-201ENST00000302516 RNF41Q9H4P4 317 aaPredicted RBP8.84□□□□□ -0.99
SF3B3-201ENST00000302516 ANKRD18BA2A2Z9 1011 aa8.84□□□□□ -0.99
SF3B3-201ENST00000302516 CAMK4Q16566 473 aa8.84□□□□□ -0.99
SF3B3-201ENST00000302516 CEP135Q66GS9 1140 aa8.84□□□□□ -0.99
SF3B3-201ENST00000302516 SMARCC1Q92922 1105 aaPredicted RBP8.84□□□□□ -0.99
SF3B3-201ENST00000302516 GCC2Q8IWJ2 1684 aa8.84□□□□□ -0.99
SF3B3-201ENST00000302516 KIF4BQ2VIQ3 1234 aa8.84□□□□□ -0.99
SF3B3-201ENST00000302516 CFAP70Q5T0N1 1121 aa8.84□□□□□ -0.99
SF3B3-201ENST00000302516 CEP112Q8N8E3 955 aa8.84□□□□□ -0.99
SF3B3-201ENST00000302516 NSRP1Q9H0G5 558 aaKnown RBP8.84□□□□□ -0.99
SF3B3-201ENST00000302516 NUP160Q12769 1436 aa8.84□□□□□ -0.99
SF3B3-201ENST00000302516 RARSP54136 660 aaKnown RBP8.84□□□□□ -0.99
SF3B3-201ENST00000302516 MEX3CQ5U5Q3 659 aaKnown RBP8.84□□□□□ -0.99
SF3B3-201ENST00000302516 UBE2Q2Q8WVN8 375 aa8.84□□□□□ -0.99
SF3B3-201ENST00000302516 DNAAF4Q8WXU2 420 aa8.84□□□□□ -0.99
SF3B3-201ENST00000302516 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.84□□□□□ -0.99
SF3B3-201ENST00000302516 GTPBP4Q9BZE4 634 aaKnown RBP8.84□□□□□ -1
SF3B3-201ENST00000302516 CEP126Q9P2H0 1117 aa8.84□□□□□ -1
SF3B3-201ENST00000302516 FBXO3Q9UK99 471 aa8.84□□□□□ -1
SF3B3-201ENST00000302516 KIAA0586Q9BVV6 1533 aa8.83□□□□□ -1
SF3B3-201ENST00000302516 ARHGEF12Q9NZN5 1544 aa8.83□□□□□ -1
SF3B3-201ENST00000302516 CCDC12Q8WUD4 166 aaPredicted RBP8.83□□□□□ -1
SF3B3-201ENST00000302516 TBC1D32Q96NH3 1257 aa8.83□□□□□ -1
SF3B3-201ENST00000302516 ADCY5O95622 1261 aa8.83□□□□□ -1
SF3B3-201ENST00000302516 TBC1D2Q9BYX2 928 aa8.83□□□□□ -1
SF3B3-201ENST00000302516 TTC21BQ7Z4L5 1316 aa8.83□□□□□ -1
SF3B3-201ENST00000302516 C16orf45Q96MC5 204 aaPredicted RBP8.83□□□□□ -1
SF3B3-201ENST00000302516 CLCN1P35523 988 aa8.83□□□□□ -1
SF3B3-201ENST00000302516 LRRC27Q9C0I9 530 aa8.83□□□□□ -1
SF3B3-201ENST00000302516 SIL1Q9H173 461 aa8.83□□□□□ -1
SF3B3-201ENST00000302516 FKBP4Q02790 459 aaKnown RBP eCLIP8.83□□□□□ -1
SF3B3-201ENST00000302516 C6orf163Q5TEZ5 329 aa8.83□□□□□ -1
SF3B3-201ENST00000302516 CACNA2D4Q7Z3S7 1137 aa8.83□□□□□ -1
SF3B3-201ENST00000302516 STX6O43752 255 aa8.83□□□□□ -1
SF3B3-201ENST00000302516 AMPD3Q01432 767 aa8.83□□□□□ -1
SF3B3-201ENST00000302516 TMEM132EQ6IEE7 984 aa8.83□□□□□ -1
SF3B3-201ENST00000302516 STK11IPQ8N1F8 1099 aa8.83□□□□□ -1
SF3B3-201ENST00000302516 EHMT1Q9H9B1 1298 aa8.83□□□□□ -1
SF3B3-201ENST00000302516 ANKS4BQ8N8V4 417 aa8.82□□□□□ -1
SF3B3-201ENST00000302516 RMND1Q9NWS8 449 aa8.82□□□□□ -1
SF3B3-201ENST00000302516 BMP15O95972 392 aa8.82□□□□□ -1
SF3B3-201ENST00000302516 TUBBP07437 444 aa8.82□□□□□ -1
SF3B3-201ENST00000302516 CETN1Q12798 172 aa8.82□□□□□ -1
SF3B3-201ENST00000302516 CCDC172P0C7W6 258 aa8.82□□□□□ -1
SF3B3-201ENST00000302516 LRSAM1Q6UWE0 723 aa8.82□□□□□ -1
SF3B3-201ENST00000302516 EVI5LQ96CN4 794 aa8.82□□□□□ -1
SF3B3-201ENST00000302516 ZHX3Q9H4I2 956 aa8.82□□□□□ -1
SF3B3-201ENST00000302516 CBX1P83916 185 aa8.82□□□□□ -1
SF3B3-201ENST00000302516 HOOK3Q86VS8 718 aa8.82□□□□□ -1
SF3B3-201ENST00000302516 ANAPC15P60006 121 aa8.82□□□□□ -1
SF3B3-201ENST00000302516 URI1O94763 535 aaPredicted RBP8.82□□□□□ -1
SF3B3-201ENST00000302516 IGHMBP2P38935 993 aaKnown RBP8.82□□□□□ -1
SF3B3-201ENST00000302516 XPCQ01831 940 aaPredicted RBP8.82□□□□□ -1
SF3B3-201ENST00000302516 ZSCAN23Q3MJ62 389 aa8.82□□□□□ -1
SF3B3-201ENST00000302516 CCDC178Q5BJE1 867 aa8.82□□□□□ -1
SF3B3-201ENST00000302516 LARP1Q6PKG0 1096 aaKnown RBP8.82□□□□□ -1
SF3B3-201ENST00000302516 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.82□□□□□ -19e-12■■□□□ 12.9
SF3B3-201ENST00000302516 ANKRD36BQ8N2N9 1353 aa8.82□□□□□ -1
SF3B3-201ENST00000302516 TTF1Q15361 905 aaPredicted RBP8.81□□□□□ -1
SF3B3-201ENST00000302516 MAP4K4O95819 1239 aaPredicted RBP8.81□□□□□ -1
SF3B3-201ENST00000302516 SSRP1Q08945 709 aaKnown RBP8.81□□□□□ -1
SF3B3-201ENST00000302516 OSCARQ8IYS5 282 aa8.81□□□□□ -1
SF3B3-201ENST00000302516 HSF2BPO75031 334 aa8.81□□□□□ -1
SF3B3-201ENST00000302516 PRKCSHP14314 528 aaPredicted RBP8.81□□□□□ -1
SF3B3-201ENST00000302516 NBPF8Q3BBV2 869 aa8.81□□□□□ -1
SF3B3-201ENST00000302516 PRPF40BQ6NWY9 871 aaKnown RBP8.81□□□□□ -1
SF3B3-201ENST00000302516 PLVAPQ9BX97 442 aa8.81□□□□□ -1
SF3B3-201ENST00000302516 HYPKQ9NX55 129 aa8.81□□□□□ -1
SF3B3-201ENST00000302516 SREK1Q8WXA9 508 aaKnown RBP8.81□□□□□ -1
SF3B3-201ENST00000302516 RASAL2Q9UJF2 1139 aa8.81□□□□□ -1
SF3B3-201ENST00000302516 CFAP65Q6ZU64 1925 aaKnown RBP8.81□□□□□ -1
SF3B3-201ENST00000302516 PPP4R3AQ6IN85 833 aa8.81□□□□□ -1
SF3B3-201ENST00000302516 SLC12A7Q9Y666 1083 aa8.81□□□□□ -1
SF3B3-201ENST00000302516 ZNF76P36508 570 aa8.81□□□□□ -1
SF3B3-201ENST00000302516 AMOTQ4VCS5 1084 aa8.81□□□□□ -1
SF3B3-201ENST00000302516 PAF1Q8N7H5 531 aa8.81□□□□□ -1
SF3B3-201ENST00000302516 ARFGAP3Q9NP61 516 aa8.81□□□□□ -1
SF3B3-201ENST00000302516 MTMR7Q9Y216 660 aa8.81□□□□□ -1
SF3B3-201ENST00000302516 DUOX2Q9NRD8 1548 aa8.81□□□□□ -1
SF3B3-201ENST00000302516 HDAC1Q13547 482 aaPredicted RBP8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms