RNA–Protein interactions for RNA: ENST00000295927.3

PTX3-201, Transcript of pentraxin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTX3, Length 1,940 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTX3-201ENST00000295927 TMOD3Q9NYL9 352 aa28.75■■■□□ 2.19
PTX3-201ENST00000295927 PDZRN3Q9UPQ7 1066 aa28.75■■■□□ 2.19
PTX3-201ENST00000295927 CCDC9Q9Y3X0 531 aaKnown RBP28.75■■■□□ 2.19
PTX3-201ENST00000295927 USP16Q9Y5T5 823 aa28.75■■■□□ 2.19
PTX3-201ENST00000295927 KCPQ6ZWJ8 1503 aa28.75■■■□□ 2.19
PTX3-201ENST00000295927 RGS3P49796 1198 aa28.75■■■□□ 2.19
PTX3-201ENST00000295927 SIRT2Q8IXJ6 389 aa28.74■■■□□ 2.19
PTX3-201ENST00000295927 SMC5Q8IY18 1101 aa28.74■■■□□ 2.19
PTX3-201ENST00000295927 LRP6O75581 1613 aa28.74■■■□□ 2.19
PTX3-201ENST00000295927 PI4KAP2A4QPH2 592 aa28.73■■■□□ 2.19
PTX3-201ENST00000295927 PI4KAP1Q8N8J0 262 aa28.73■■■□□ 2.19
PTX3-201ENST00000295927 ADCY9O60503 1353 aa28.72■■■□□ 2.19
PTX3-201ENST00000295927 BCL9LQ86UU0 1499 aa28.72■■■□□ 2.19
PTX3-201ENST00000295927 HSPA1LP34931 641 aa28.71■■■□□ 2.19
PTX3-201ENST00000295927 BARGINQ6ZT62 677 aa28.71■■■□□ 2.19
PTX3-201ENST00000295927 DNAAF4Q8WXU2 420 aa28.71■■■□□ 2.19
PTX3-201ENST00000295927 ATP10DQ9P241 1426 aa28.71■■■□□ 2.19
PTX3-201ENST00000295927 DDB1Q16531 1140 aa28.71■■■□□ 2.19
PTX3-201ENST00000295927 PIGBQ92521 554 aa28.7■■■□□ 2.18
PTX3-201ENST00000295927 RBM19Q9Y4C8 960 aaKnown RBP28.7■■■□□ 2.18
PTX3-201ENST00000295927 KAT6BQ8WYB5 2073 aa28.69■■■□□ 2.18
PTX3-201ENST00000295927 FNBP4Q8N3X1 1017 aaPredicted RBP28.69■■■□□ 2.18
PTX3-201ENST00000295927 PTCD1O75127 700 aaKnown RBP28.68■■■□□ 2.18
PTX3-201ENST00000295927 MYL6BP14649 208 aa28.68■■■□□ 2.18
PTX3-201ENST00000295927 KSR2Q6VAB6 950 aa28.68■■■□□ 2.18
PTX3-201ENST00000295927 ANKRD44Q8N8A2 993 aa28.68■■■□□ 2.18
PTX3-201ENST00000295927 SRCIN1Q9C0H9 1055 aa28.68■■■□□ 2.18
PTX3-201ENST00000295927 VPS72Q15906 364 aa28.67■■■□□ 2.18
PTX3-201ENST00000295927 CEP85Q6P2H3 762 aa28.67■■■□□ 2.18
PTX3-201ENST00000295927 RPAP2Q8IXW5 612 aaPredicted RBP28.67■■■□□ 2.18
PTX3-201ENST00000295927 DOT1LQ8TEK3 1739 aa28.67■■■□□ 2.18
PTX3-201ENST00000295927 GNAI3P08754 354 aa28.67■■■□□ 2.18
PTX3-201ENST00000295927 BEND3Q5T5X7 828 aa28.67■■■□□ 2.18
PTX3-201ENST00000295927 MAP3K2Q9Y2U5 619 aa28.66■■■□□ 2.18
PTX3-201ENST00000295927 BCL9O00512 1426 aa28.65■■■□□ 2.18
PTX3-201ENST00000295927 AIMP1Q12904 312 aaKnown RBP28.65■■■□□ 2.18
PTX3-201ENST00000295927 DDX58O95786 925 aaKnown RBP28.65■■■□□ 2.18
PTX3-201ENST00000295927 GNAI2P04899 355 aa28.65■■■□□ 2.18
PTX3-201ENST00000295927 LRP10Q7Z4F1 713 aa28.65■■■□□ 2.18
PTX3-201ENST00000295927 GCC1Q96CN9 775 aa28.65■■■□□ 2.18
PTX3-201ENST00000295927 USP44Q9H0E7 712 aa28.65■■■□□ 2.18
PTX3-201ENST00000295927 ASAP1Q9ULH1 1129 aa28.65■■■□□ 2.18
PTX3-201ENST00000295927 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.64■■■□□ 2.18
PTX3-201ENST00000295927 PIP4K2AP48426 406 aaPredicted RBP28.63■■■□□ 2.17
PTX3-201ENST00000295927 ATG3Q9NT62 314 aa28.63■■■□□ 2.17
PTX3-201ENST00000295927 XAGE3Q8WTP9 111 aa28.63■■■□□ 2.17
PTX3-201ENST00000295927 PDE4AP27815 886 aa28.62■■■□□ 2.17
PTX3-201ENST00000295927 NUCB1Q02818 461 aa28.62■■■□□ 2.17
PTX3-201ENST00000295927 COPS6Q7L5N1 327 aa28.62■■■□□ 2.17
PTX3-201ENST00000295927 MARCH10Q8NA82 808 aaPredicted RBP28.62■■■□□ 2.17
PTX3-201ENST00000295927 ERBB4Q15303 1308 aa28.62■■■□□ 2.17
PTX3-201ENST00000295927 FAM98CQ17RN3 349 aaKnown RBP28.61■■■□□ 2.17
PTX3-201ENST00000295927 USP21Q9UK80 565 aa28.61■■■□□ 2.17
PTX3-201ENST00000295927 SYTL4Q96C24 671 aaPredicted RBP28.6■■■□□ 2.17
PTX3-201ENST00000295927 PRIM1P49642 420 aaKnown RBP28.59■■■□□ 2.17
PTX3-201ENST00000295927 UBTFL1P0CB47 393 aaPredicted RBP28.59■■■□□ 2.17
PTX3-201ENST00000295927 DCTPP1Q9H773 170 aa28.59■■■□□ 2.17
PTX3-201ENST00000295927 NBPF26B4DH59 902 aa28.58■■■□□ 2.17
PTX3-201ENST00000295927 NBPF14Q5TI25 921 aa28.58■■■□□ 2.17
PTX3-201ENST00000295927 MEX3CQ5U5Q3 659 aaKnown RBP28.58■■■□□ 2.17
PTX3-201ENST00000295927 NBPF10Q6P3W6 841 aaKnown RBP28.58■■■□□ 2.17
PTX3-201ENST00000295927 RIC3Q7Z5B4 369 aa28.58■■■□□ 2.17
PTX3-201ENST00000295927 NBPF15Q8N660 670 aa28.58■■■□□ 2.17
PTX3-201ENST00000295927 BACH2Q9BYV9 841 aa28.58■■■□□ 2.17
PTX3-201ENST00000295927 ALDH1L1O75891 902 aa28.57■■■□□ 2.16
PTX3-201ENST00000295927 VSIG10Q8N0Z9 540 aa28.57■■■□□ 2.16
PTX3-201ENST00000295927 LRRFIP2Q9Y608 721 aaKnown RBP28.57■■■□□ 2.16
PTX3-201ENST00000295927 CHD1LQ86WJ1 897 aa28.57■■■□□ 2.16
PTX3-201ENST00000295927 A1BGP04217 495 aa28.56■■■□□ 2.16
PTX3-201ENST00000295927 ANKRD45Q5TZF3 282 aa28.56■■■□□ 2.16
PTX3-201ENST00000295927 HMMRO75330 724 aa28.55■■■□□ 2.16
PTX3-201ENST00000295927 LINS1Q8NG48 757 aa28.55■■■□□ 2.16
PTX3-201ENST00000295927 RBM42Q9BTD8 480 aaKnown RBP28.55■■■□□ 2.16
PTX3-201ENST00000295927 ANKRD13DQ6ZTN6 518 aa28.55■■■□□ 2.16
PTX3-201ENST00000295927 LNPKQ9C0E8 428 aa28.55■■■□□ 2.16
PTX3-201ENST00000295927 ARFGEF2Q9Y6D5 1785 aa28.54■■■□□ 2.16
PTX3-201ENST00000295927 NBPF7P0C2Y1 421 aaPredicted RBP28.54■■■□□ 2.16
PTX3-201ENST00000295927 CWF19L2Q2TBE0 894 aaKnown RBP28.54■■■□□ 2.16
PTX3-201ENST00000295927 TEX13AQ9BXU3 409 aaPredicted RBP28.54■■■□□ 2.16
PTX3-201ENST00000295927 DNAJC10Q8IXB1 793 aa28.53■■■□□ 2.16
PTX3-201ENST00000295927 ACSBG1Q96GR2 724 aa28.53■■■□□ 2.16
PTX3-201ENST00000295927 ATP8B2P98198 1209 aa28.52■■■□□ 2.16
PTX3-201ENST00000295927 FAM161AQ3B820 660 aa28.52■■■□□ 2.16
PTX3-201ENST00000295927 METTL22Q9BUU2 404 aaPredicted RBP28.52■■■□□ 2.16
PTX3-201ENST00000295927 NEXNQ0ZGT2 675 aa28.51■■■□□ 2.15
PTX3-201ENST00000295927 IGKV5-2P06315 115 aa28.5■■■□□ 2.15
PTX3-201ENST00000295927 C9orf78Q9NZ63 289 aaPredicted RBP28.5■■■□□ 2.15
PTX3-201ENST00000295927 AFF2P51816 1311 aa28.5■■■□□ 2.15
PTX3-201ENST00000295927 PNMA6EA0A0J9YXQ4 647 aa28.49■■■□□ 2.15
PTX3-201ENST00000295927 C8orf34Q49A92 452 aa28.49■■■□□ 2.15
PTX3-201ENST00000295927 PLBD2Q8NHP8 589 aa28.49■■■□□ 2.15
PTX3-201ENST00000295927 SLC4A9Q96Q91 983 aa28.49■■■□□ 2.15
PTX3-201ENST00000295927 THSD7AQ9UPZ6 1657 aa28.49■■■□□ 2.15
PTX3-201ENST00000295927 A0A0G2JS52 829 aa28.49■■■□□ 2.15
PTX3-201ENST00000295927 MYD88Q99836 296 aa28.49■■■□□ 2.15
PTX3-201ENST00000295927 STARD3NLO95772 234 aa28.48■■■□□ 2.15
PTX3-201ENST00000295927 AFDNP55196 1824 aaKnown RBP28.48■■■□□ 2.15
PTX3-201ENST00000295927 IBTKQ9P2D0 1353 aaPredicted RBP28.47■■■□□ 2.15
PTX3-201ENST00000295927 NUP188Q5SRE5 1749 aa28.47■■■□□ 2.15
PTX3-201ENST00000295927 TJP1Q07157 1748 aa28.47■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms