RNA–Protein interactions for RNA: ENST00000279550.11

YBX3-202, Transcript of Y-box binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene YBX3, Length 1,708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-202ENST00000279550 NECTIN2Q92692 538 aa26.38■■□□□ 1.81
YBX3-202ENST00000279550 TTC5Q8N0Z6 440 aa26.37■■□□□ 1.81
YBX3-202ENST00000279550 TMOD3Q9NYL9 352 aa26.37■■□□□ 1.81
YBX3-202ENST00000279550 CCDC30Q5VVM6 783 aa26.36■■□□□ 1.81
YBX3-202ENST00000279550 GIGYF1O75420 1035 aaPredicted RBP26.35■■□□□ 1.81
YBX3-202ENST00000279550 IPO9Q96P70 1041 aaKnown RBP26.35■■□□□ 1.81
YBX3-202ENST00000279550 STK31Q9BXU1 1019 aa26.35■■□□□ 1.81
YBX3-202ENST00000279550 F6X3S4 739 aa26.34■■□□□ 1.81
YBX3-202ENST00000279550 ONECUT3O60422 494 aaPredicted RBP26.34■■□□□ 1.81
YBX3-202ENST00000279550 HDGFL1Q5TGJ6 251 aa26.34■■□□□ 1.81
YBX3-202ENST00000279550 ZNF496Q96IT1 587 aaPredicted RBP26.34■■□□□ 1.81
YBX3-202ENST00000279550 PAPPAQ13219 1627 aa26.33■■□□□ 1.81
YBX3-202ENST00000279550 PIGBQ92521 554 aa26.33■■□□□ 1.81
YBX3-202ENST00000279550 BCL9O00512 1426 aa26.32■■□□□ 1.8
YBX3-202ENST00000279550 NUCB1Q02818 461 aa26.32■■□□□ 1.8
YBX3-202ENST00000279550 FMNL2Q96PY5 1086 aa26.32■■□□□ 1.8
YBX3-202ENST00000279550 DOT1LQ8TEK3 1739 aa26.32■■□□□ 1.8
YBX3-202ENST00000279550 ITGB4P16144 1822 aa26.31■■□□□ 1.8
YBX3-202ENST00000279550 ATP10DQ9P241 1426 aa26.31■■□□□ 1.8
YBX3-202ENST00000279550 FLIIQ13045 1269 aa26.31■■□□□ 1.8
YBX3-202ENST00000279550 ZNF772Q68DY9 489 aaPredicted RBP26.31■■□□□ 1.8
YBX3-202ENST00000279550 CHMP4AQ9BY43 222 aa26.31■■□□□ 1.8
YBX3-202ENST00000279550 PRAMEF22A3QJZ6 481 aa26.3■■□□□ 1.8
YBX3-202ENST00000279550 EIF2S2P20042 333 aaKnown RBP26.3■■□□□ 1.8
YBX3-202ENST00000279550 PRIM1P49642 420 aaKnown RBP26.3■■□□□ 1.8
YBX3-202ENST00000279550 SYTL4Q96C24 671 aaPredicted RBP26.3■■□□□ 1.8
YBX3-202ENST00000279550 MEIS3Q99687 375 aa26.3■■□□□ 1.8
YBX3-202ENST00000279550 UBR2Q8IWV8 1755 aa26.29■■□□□ 1.8
YBX3-202ENST00000279550 SLC4A10Q6U841 1118 aa26.28■■□□□ 1.8
YBX3-202ENST00000279550 KCPQ6ZWJ8 1503 aa26.28■■□□□ 1.8
YBX3-202ENST00000279550 SNRPA1P09661 255 aaKnown RBP26.28■■□□□ 1.8
YBX3-202ENST00000279550 SEPT12Q8IYM1 358 aa26.28■■□□□ 1.8
YBX3-202ENST00000279550 CACNA1FO60840 1977 aa26.27■■□□□ 1.8
YBX3-202ENST00000279550 LNPKQ9C0E8 428 aa26.27■■□□□ 1.8
YBX3-202ENST00000279550 ASAP1Q9ULH1 1129 aa26.27■■□□□ 1.8
YBX3-202ENST00000279550 CHD1LQ86WJ1 897 aa26.26■■□□□ 1.79
YBX3-202ENST00000279550 GCC1Q96CN9 775 aa26.26■■□□□ 1.79
YBX3-202ENST00000279550 ACSBG1Q96GR2 724 aa26.26■■□□□ 1.79
YBX3-202ENST00000279550 C5P01031 1676 aa26.26■■□□□ 1.79
YBX3-202ENST00000279550 SEC24BO95487 1268 aa26.25■■□□□ 1.79
YBX3-202ENST00000279550 CCT4P50991 539 aaKnown RBP26.25■■□□□ 1.79
YBX3-202ENST00000279550 FKBP5Q13451 457 aaPredicted RBP26.25■■□□□ 1.79
YBX3-202ENST00000279550 ANKRD44Q8N8A2 993 aa26.25■■□□□ 1.79
YBX3-202ENST00000279550 ATG3Q9NT62 314 aa26.25■■□□□ 1.79
YBX3-202ENST00000279550 NOP58Q9Y2X3 529 aaKnown RBP26.25■■□□□ 1.79
YBX3-202ENST00000279550 PTCD1O75127 700 aaKnown RBP26.25■■□□□ 1.79
YBX3-202ENST00000279550 N4BP2Q86UW6 1770 aaPredicted RBP26.24■■□□□ 1.79
YBX3-202ENST00000279550 CEP85Q6P2H3 762 aa26.24■■□□□ 1.79
YBX3-202ENST00000279550 PHAXQ9H814 394 aaKnown RBP26.24■■□□□ 1.79
YBX3-202ENST00000279550 CHPF2Q9P2E5 772 aa26.24■■□□□ 1.79
YBX3-202ENST00000279550 ANKRD45Q5TZF3 282 aa26.23■■□□□ 1.79
YBX3-202ENST00000279550 DBF4Q9UBU7 674 aaPredicted RBP26.22■■□□□ 1.79
YBX3-202ENST00000279550 KAT6BQ8WYB5 2073 aa26.22■■□□□ 1.79
YBX3-202ENST00000279550 USP16Q9Y5T5 823 aa26.22■■□□□ 1.79
YBX3-202ENST00000279550 RBM6P78332 1123 aaKnown RBP26.21■■□□□ 1.79
YBX3-202ENST00000279550 PXDNLA1KZ92 1463 aa26.2■■□□□ 1.78
YBX3-202ENST00000279550 KCNQ2O43526 872 aa26.19■■□□□ 1.78
YBX3-202ENST00000279550 RPAP2Q8IXW5 612 aaPredicted RBP26.19■■□□□ 1.78
YBX3-202ENST00000279550 DCTPP1Q9H773 170 aa26.19■■□□□ 1.78
YBX3-202ENST00000279550 FAM182BQ5T319 152 aa26.18■■□□□ 1.78
YBX3-202ENST00000279550 ERICH6Q7L0X2 663 aa26.18■■□□□ 1.78
YBX3-202ENST00000279550 VSIG10Q8N0Z9 540 aa26.18■■□□□ 1.78
YBX3-202ENST00000279550 ZBTB47Q9UFB7 747 aaPredicted RBP26.18■■□□□ 1.78
YBX3-202ENST00000279550 LAMB4A4D0S4 1761 aa26.18■■□□□ 1.78
YBX3-202ENST00000279550 ANP32EQ9BTT0 268 aa26.17■■□□□ 1.78
YBX3-202ENST00000279550 DDX21Q9NR30 783 aaKnown RBP eCLIP26.17■■□□□ 1.78
YBX3-202ENST00000279550 ANXA1P04083 346 aa26.17■■□□□ 1.78
YBX3-202ENST00000279550 PDIA6Q15084 440 aa26.17■■□□□ 1.78
YBX3-202ENST00000279550 PROSER3Q2NL68 480 aa26.17■■□□□ 1.78
YBX3-202ENST00000279550 RBM42Q9BTD8 480 aaKnown RBP26.17■■□□□ 1.78
YBX3-202ENST00000279550 HYPKQ9NX55 129 aa26.15■■□□□ 1.78
YBX3-202ENST00000279550 RGS17Q9UGC6 210 aaPredicted RBP26.14■■□□□ 1.77
YBX3-202ENST00000279550 TEX13AQ9BXU3 409 aaPredicted RBP26.13■■□□□ 1.77
YBX3-202ENST00000279550 GNAI2P04899 355 aa26.12■■□□□ 1.77
YBX3-202ENST00000279550 RXRBP28702 533 aa26.12■■□□□ 1.77
YBX3-202ENST00000279550 KRT27Q7Z3Y8 459 aa26.12■■□□□ 1.77
YBX3-202ENST00000279550 SLC4A9Q96Q91 983 aa26.12■■□□□ 1.77
YBX3-202ENST00000279550 NHSQ6T4R5 1651 aa26.12■■□□□ 1.77
YBX3-202ENST00000279550 ERBB4Q15303 1308 aa26.12■■□□□ 1.77
YBX3-202ENST00000279550 DDRGK1Q96HY6 314 aa26.11■■□□□ 1.77
YBX3-202ENST00000279550 SMARCC1Q92922 1105 aaPredicted RBP26.11■■□□□ 1.77
YBX3-202ENST00000279550 PALLDQ8WX93 1383 aa26.11■■□□□ 1.77
YBX3-202ENST00000279550 BRWD3Q6RI45 1802 aa26.1■■□□□ 1.77
YBX3-202ENST00000279550 ADCY9O60503 1353 aa26.1■■□□□ 1.77
YBX3-202ENST00000279550 GNAI3P08754 354 aa26.1■■□□□ 1.77
YBX3-202ENST00000279550 MYL6BP14649 208 aa26.1■■□□□ 1.77
YBX3-202ENST00000279550 DNAJC10Q8IXB1 793 aa26.1■■□□□ 1.77
YBX3-202ENST00000279550 PTF1AQ7RTS3 328 aa26.09■■□□□ 1.77
YBX3-202ENST00000279550 LRP10Q7Z4F1 713 aa26.09■■□□□ 1.77
YBX3-202ENST00000279550 USP44Q9H0E7 712 aa26.09■■□□□ 1.77
YBX3-202ENST00000279550 PIP4K2AP48426 406 aaPredicted RBP26.08■■□□□ 1.77
YBX3-202ENST00000279550 STARD3NLO95772 234 aa26.08■■□□□ 1.76
YBX3-202ENST00000279550 LOC102724428A0A0B4J2F2 783 aa26.07■■□□□ 1.76
YBX3-202ENST00000279550 PI4KAP2A4QPH2 592 aa26.07■■□□□ 1.76
YBX3-202ENST00000279550 A1BGP04217 495 aa26.07■■□□□ 1.76
YBX3-202ENST00000279550 SIK1P57059 783 aa26.07■■□□□ 1.76
YBX3-202ENST00000279550 PI4KAP1Q8N8J0 262 aa26.07■■□□□ 1.76
YBX3-202ENST00000279550 DNAAF4Q8WXU2 420 aa26.07■■□□□ 1.76
YBX3-202ENST00000279550 EP400Q96L91 3159 aa26.07■■□□□ 1.76
YBX3-202ENST00000279550 NBPF26B4DH59 902 aa26.06■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms