RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 ZHX1Q9UKY1 873 aaPredicted RBP9.24□□□□□ -0.93
LIMD1-201ENST00000273317 BTBD11A6QL63 1104 aa9.24□□□□□ -0.93
LIMD1-201ENST00000273317 FKBP4Q02790 459 aaKnown RBP eCLIP9.24□□□□□ -0.93
LIMD1-201ENST00000273317 CEP63Q96MT8 703 aa9.24□□□□□ -0.93
LIMD1-201ENST00000273317 TUBB4AP04350 444 aa9.24□□□□□ -0.93
LIMD1-201ENST00000273317 LRPPRCP42704 1394 aaKnown RBP9.24□□□□□ -0.93
LIMD1-201ENST00000273317 GOLIM4O00461 696 aa9.24□□□□□ -0.93
LIMD1-201ENST00000273317 PAFAH1B1P43034 410 aa9.24□□□□□ -0.93
LIMD1-201ENST00000273317 NUTM2GQ5VZR2 741 aa9.24□□□□□ -0.93
LIMD1-201ENST00000273317 IPO4Q8TEX9 1081 aaKnown RBP9.24□□□□□ -0.93
LIMD1-201ENST00000273317 RNF41Q9H4P4 317 aaPredicted RBP9.23□□□□□ -0.93
LIMD1-201ENST00000273317 NUP88Q99567 741 aaPredicted RBP9.23□□□□□ -0.93
LIMD1-201ENST00000273317 MPHOSPH10O00566 681 aaKnown RBP9.23□□□□□ -0.93
LIMD1-201ENST00000273317 CETN1Q12798 172 aa9.23□□□□□ -0.93
LIMD1-201ENST00000273317 CTR9Q6PD62 1173 aa9.23□□□□□ -0.93
LIMD1-201ENST00000273317 CCDC12Q8WUD4 166 aaPredicted RBP9.23□□□□□ -0.93
LIMD1-201ENST00000273317 PRG4Q92954 1404 aaPredicted RBP9.23□□□□□ -0.93
LIMD1-201ENST00000273317 TUBB4BP68371 445 aa9.23□□□□□ -0.93
LIMD1-201ENST00000273317 KANK3Q6NY19 840 aa9.23□□□□□ -0.93
LIMD1-201ENST00000273317 NESP48681 1621 aa9.23□□□□□ -0.93
LIMD1-201ENST00000273317 THOC2Q8NI27 1593 aaKnown RBP9.23□□□□□ -0.93
LIMD1-201ENST00000273317 SLFN5Q08AF3 891 aa9.23□□□□□ -0.93
LIMD1-201ENST00000273317 C8orf76Q96K31 380 aa9.23□□□□□ -0.93
LIMD1-201ENST00000273317 TMEM132EQ6IEE7 984 aa9.23□□□□□ -0.93
LIMD1-201ENST00000273317 CEP112Q8N8E3 955 aa9.23□□□□□ -0.93
LIMD1-201ENST00000273317 RBM42Q9BTD8 480 aaKnown RBP9.23□□□□□ -0.93
LIMD1-201ENST00000273317 LIMCH1Q9UPQ0 1083 aa9.23□□□□□ -0.93
LIMD1-201ENST00000273317 IFI16Q16666 785 aaKnown RBP9.22□□□□□ -0.93
LIMD1-201ENST00000273317 CCDC178Q5BJE1 867 aa9.22□□□□□ -0.93
LIMD1-201ENST00000273317 RAI14Q9P0K7 980 aa9.22□□□□□ -0.93
LIMD1-201ENST00000273317 ZBTB9Q96C00 473 aa9.22□□□□□ -0.93
LIMD1-201ENST00000273317 TMOD2Q9NZR1 351 aa9.22□□□□□ -0.93
LIMD1-201ENST00000273317 GNAT3A8MTJ3 354 aa9.22□□□□□ -0.93
LIMD1-201ENST00000273317 CACNA2D4Q7Z3S7 1137 aa9.22□□□□□ -0.93
LIMD1-201ENST00000273317 SREK1Q8WXA9 508 aaKnown RBP9.22□□□□□ -0.93
LIMD1-201ENST00000273317 HMG20BQ9P0W2 317 aa9.22□□□□□ -0.93
LIMD1-201ENST00000273317 ZNF652Q9Y2D9 606 aa9.22□□□□□ -0.93
LIMD1-201ENST00000273317 PTPRCP08575 1304 aa9.22□□□□□ -0.93
LIMD1-201ENST00000273317 GSTTP1A0A1W2PQM5 241 aa9.22□□□□□ -0.93
LIMD1-201ENST00000273317 LRP2BPQ9P2M1 347 aa9.22□□□□□ -0.93
LIMD1-201ENST00000273317 TTC21AQ8NDW8 1320 aa9.22□□□□□ -0.93
LIMD1-201ENST00000273317 CKAP4Q07065 602 aaKnown RBP9.22□□□□□ -0.93
LIMD1-201ENST00000273317 C6orf163Q5TEZ5 329 aa9.22□□□□□ -0.93
LIMD1-201ENST00000273317 SLF2Q8IX21 1173 aa9.22□□□□□ -0.93
LIMD1-201ENST00000273317 C11orf95C9JLR9 678 aaPredicted RBP9.22□□□□□ -0.93
LIMD1-201ENST00000273317 MAP4K4O95819 1239 aaPredicted RBP9.22□□□□□ -0.93
LIMD1-201ENST00000273317 ESCO1Q5FWF5 840 aa9.22□□□□□ -0.93
LIMD1-201ENST00000273317 LRRC27Q9C0I9 530 aa9.22□□□□□ -0.93
LIMD1-201ENST00000273317 NSRP1Q9H0G5 558 aaKnown RBP9.22□□□□□ -0.93
LIMD1-201ENST00000273317 KIF4BQ2VIQ3 1234 aa9.22□□□□□ -0.93
LIMD1-201ENST00000273317 BCCIPQ9P287 314 aaKnown RBP eCLIP9.22□□□□□ -0.93
LIMD1-201ENST00000273317 IVLP07476 585 aa9.21□□□□□ -0.93
LIMD1-201ENST00000273317 CUL5Q93034 780 aa9.21□□□□□ -0.93
LIMD1-201ENST00000273317 STMN4Q9H169 189 aaPredicted RBP9.21□□□□□ -0.93
LIMD1-201ENST00000273317 CAMK4Q16566 473 aa9.21□□□□□ -0.93
LIMD1-201ENST00000273317 CFAP70Q5T0N1 1121 aa9.21□□□□□ -0.94
LIMD1-201ENST00000273317 STXBP4Q6ZWJ1 553 aa9.21□□□□□ -0.94
LIMD1-201ENST00000273317 CTCFLQ8NI51 663 aaPredicted RBP9.21□□□□□ -0.94
LIMD1-201ENST00000273317 CCDC172P0C7W6 258 aa9.21□□□□□ -0.94
LIMD1-201ENST00000273317 SSRP1Q08945 709 aaKnown RBP9.21□□□□□ -0.94
LIMD1-201ENST00000273317 LARP1Q6PKG0 1096 aaKnown RBP9.21□□□□□ -0.94
LIMD1-201ENST00000273317 TMEM57Q8N5G2 664 aa9.21□□□□□ -0.94
LIMD1-201ENST00000273317 AMPD3Q01432 767 aa9.21□□□□□ -0.94
LIMD1-201ENST00000273317 KIF5BP33176 963 aa9.21□□□□□ -0.94
LIMD1-201ENST00000273317 FAM69CQ0P6D2 419 aa9.21□□□□□ -0.94
LIMD1-201ENST00000273317 SMARCC1Q92922 1105 aaPredicted RBP9.21□□□□□ -0.94
LIMD1-201ENST00000273317 FERMT1Q9BQL6 677 aa9.2□□□□□ -0.94
LIMD1-201ENST00000273317 TOPBP1Q92547 1522 aa9.2□□□□□ -0.94
LIMD1-201ENST00000273317 PRPF40BQ6NWY9 871 aaKnown RBP9.2□□□□□ -0.94
LIMD1-201ENST00000273317 SLC12A7Q9Y666 1083 aa9.2□□□□□ -0.94
LIMD1-201ENST00000273317 TMPOP42166 694 aaKnown RBP9.2□□□□□ -0.94
LIMD1-201ENST00000273317 GTPBP4Q9BZE4 634 aaKnown RBP9.2□□□□□ -0.94
LIMD1-201ENST00000273317 RASAL2Q9UJF2 1139 aa9.2□□□□□ -0.94
LIMD1-201ENST00000273317 RNF187Q5TA31 235 aaPredicted RBP9.2□□□□□ -0.94
LIMD1-201ENST00000273317 THEMISQ8N1K5 641 aaPredicted RBP9.2□□□□□ -0.94
LIMD1-201ENST00000273317 GOPCQ9HD26 462 aa9.2□□□□□ -0.94
LIMD1-201ENST00000273317 RMND1Q9NWS8 449 aa9.2□□□□□ -0.94
LIMD1-201ENST00000273317 DCAF8L1A6NGE4 600 aa9.2□□□□□ -0.94
LIMD1-201ENST00000273317 SNW1Q13573 536 aaKnown RBP9.2□□□□□ -0.94
LIMD1-201ENST00000273317 GOLGA8BA8MQT2 603 aa9.2□□□□□ -0.94
LIMD1-201ENST00000273317 STARD3NLO95772 234 aa9.2□□□□□ -0.94
LIMD1-201ENST00000273317 BMP15O95972 392 aa9.2□□□□□ -0.94
LIMD1-201ENST00000273317 HYPKQ9NX55 129 aa9.2□□□□□ -0.94
LIMD1-201ENST00000273317 UBE2HP62256 183 aa9.19□□□□□ -0.94
LIMD1-201ENST00000273317 BMS1Q14692 1282 aaKnown RBP9.19□□□□□ -0.94
LIMD1-201ENST00000273317 TTF1Q15361 905 aaPredicted RBP9.19□□□□□ -0.94
LIMD1-201ENST00000273317 PRXQ9BXM0 1461 aa9.19□□□□□ -0.94
LIMD1-201ENST00000273317 CCDC113Q9H0I3 377 aa9.19□□□□□ -0.94
LIMD1-201ENST00000273317 RBM5P52756 815 aaKnown RBP eCLIP9.19□□□□□ -0.94
LIMD1-201ENST00000273317 CATIPQ7Z7H3 387 aa9.19□□□□□ -0.94
LIMD1-201ENST00000273317 PLVAPQ9BX97 442 aa9.19□□□□□ -0.94
LIMD1-201ENST00000273317 TTC12Q9H892 705 aaPredicted RBP9.19□□□□□ -0.94
LIMD1-201ENST00000273317 FSD2A1L4K1 749 aa9.19□□□□□ -0.94
LIMD1-201ENST00000273317 SLC5A1P13866 664 aa9.19□□□□□ -0.94
LIMD1-201ENST00000273317 CTAGE1Q96RT6 745 aa9.19□□□□□ -0.94
LIMD1-201ENST00000273317 NCOA1Q15788 1441 aa9.19□□□□□ -0.94
LIMD1-201ENST00000273317 AMOTQ4VCS5 1084 aa9.19□□□□□ -0.94
LIMD1-201ENST00000273317 NAPBQ9H115 298 aa9.19□□□□□ -0.94
LIMD1-201ENST00000273317 CABP1Q9NZU7 370 aa9.19□□□□□ -0.94
LIMD1-201ENST00000273317 SNAPC4Q5SXM2 1469 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms