RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 GLI3P10071 1580 aa20.69■□□□□ 0.9
CCDC40-201ENST00000269318 C16orf71Q8IYS4 520 aaPredicted RBP20.68■□□□□ 0.9
CCDC40-201ENST00000269318 STRN4Q9NRL3 753 aa20.68■□□□□ 0.9
CCDC40-201ENST00000269318 NKX1-1Q15270 411 aaPredicted RBP20.68■□□□□ 0.9
CCDC40-201ENST00000269318 KSR2Q6VAB6 950 aa20.68■□□□□ 0.9
CCDC40-201ENST00000269318 COL22A1Q8NFW1 1626 aaPredicted RBP20.67■□□□□ 0.9
CCDC40-201ENST00000269318 CABP4P57796 275 aa20.67■□□□□ 0.9
CCDC40-201ENST00000269318 SMARCA5O60264 1052 aaPredicted RBP20.66■□□□□ 0.9
CCDC40-201ENST00000269318 GSPT1P15170 499 aaKnown RBP20.66■□□□□ 0.9
CCDC40-201ENST00000269318 EVA1CP58658 441 aa20.66■□□□□ 0.9
CCDC40-201ENST00000269318 MAP3K2Q9Y2U5 619 aa20.66■□□□□ 0.9
CCDC40-201ENST00000269318 TTC5Q8N0Z6 440 aa20.66■□□□□ 0.9
CCDC40-201ENST00000269318 OTUD7AQ8TE49 926 aaPredicted RBP20.66■□□□□ 0.9
CCDC40-201ENST00000269318 SNRPA1P09661 255 aaKnown RBP20.65■□□□□ 0.9
CCDC40-201ENST00000269318 NBPF7P0C2Y1 421 aaPredicted RBP20.65■□□□□ 0.9
CCDC40-201ENST00000269318 FMNL2Q96PY5 1086 aa20.65■□□□□ 0.9
CCDC40-201ENST00000269318 ALDH1L1O75891 902 aa20.65■□□□□ 0.9
CCDC40-201ENST00000269318 TTC22Q5TAA0 569 aa20.65■□□□□ 0.9
CCDC40-201ENST00000269318 IBTKQ9P2D0 1353 aaPredicted RBP20.64■□□□□ 0.89
CCDC40-201ENST00000269318 COL14A1Q05707 1796 aaKnown RBP20.64■□□□□ 0.89
CCDC40-201ENST00000269318 ERVV-2B6SEH9 535 aa20.64■□□□□ 0.89
CCDC40-201ENST00000269318 APBB1O00213 710 aa20.64■□□□□ 0.89
CCDC40-201ENST00000269318 MFAP1P55081 439 aaKnown RBP20.64■□□□□ 0.89
CCDC40-201ENST00000269318 SSH3Q8TE77 659 aa20.64■□□□□ 0.89
CCDC40-201ENST00000269318 EXOC6BQ9Y2D4 811 aa20.64■□□□□ 0.89
CCDC40-201ENST00000269318 LRP10Q7Z4F1 713 aa20.63■□□□□ 0.89
CCDC40-201ENST00000269318 POLA2Q14181 598 aa20.63■□□□□ 0.89
CCDC40-201ENST00000269318 BTG4Q9NY30 223 aa20.63■□□□□ 0.89
CCDC40-201ENST00000269318 USP16Q9Y5T5 823 aa20.63■□□□□ 0.89
CCDC40-201ENST00000269318 COL16A1Q07092 1604 aaPredicted RBP20.62■□□□□ 0.89
CCDC40-201ENST00000269318 PAPPAQ13219 1627 aa20.62■□□□□ 0.89
CCDC40-201ENST00000269318 DDX58O95786 925 aaKnown RBP20.62■□□□□ 0.89
CCDC40-201ENST00000269318 SLC4A3P48751 1232 aa20.62■□□□□ 0.89
CCDC40-201ENST00000269318 C22orf23Q9BZE7 217 aa20.62■□□□□ 0.89
CCDC40-201ENST00000269318 LAMB4A4D0S4 1761 aa20.62■□□□□ 0.89
CCDC40-201ENST00000269318 UBR2Q8IWV8 1755 aa20.62■□□□□ 0.89
CCDC40-201ENST00000269318 TBC1D9Q6ZT07 1266 aa20.61■□□□□ 0.89
CCDC40-201ENST00000269318 PPP1R42Q7Z4L9 355 aa20.61■□□□□ 0.89
CCDC40-201ENST00000269318 ILDR1Q86SU0 546 aaPredicted RBP20.61■□□□□ 0.89
CCDC40-201ENST00000269318 OSBPL3Q9H4L5 887 aa20.61■□□□□ 0.89
CCDC40-201ENST00000269318 LINS1Q8NG48 757 aa20.6■□□□□ 0.89
CCDC40-201ENST00000269318 LRRCC1Q9C099 1032 aa20.6■□□□□ 0.89
CCDC40-201ENST00000269318 SALL3Q9BXA9 1300 aa20.6■□□□□ 0.89
CCDC40-201ENST00000269318 AIMP1Q12904 312 aaKnown RBP20.59■□□□□ 0.89
CCDC40-201ENST00000269318 DDX54Q8TDD1 881 aaKnown RBP20.59■□□□□ 0.89
CCDC40-201ENST00000269318 KCPQ6ZWJ8 1503 aa20.59■□□□□ 0.89
CCDC40-201ENST00000269318 CDC45O75419 566 aa20.59■□□□□ 0.89
CCDC40-201ENST00000269318 MYL6BP14649 208 aa20.59■□□□□ 0.89
CCDC40-201ENST00000269318 CWF19L2Q2TBE0 894 aaKnown RBP20.59■□□□□ 0.89
CCDC40-201ENST00000269318 TOGARAM1Q9Y4F4 1720 aa20.58■□□□□ 0.89
CCDC40-201ENST00000269318 MTX1Q13505 466 aa20.58■□□□□ 0.89
CCDC40-201ENST00000269318 XAGE3Q8WTP9 111 aa20.58■□□□□ 0.89
CCDC40-201ENST00000269318 DAXXQ9UER7 740 aaPredicted RBP20.58■□□□□ 0.89
CCDC40-201ENST00000269318 UTYO14607 1347 aa20.58■□□□□ 0.89
CCDC40-201ENST00000269318 DISP2A7MBM2 1401 aa20.58■□□□□ 0.89
CCDC40-201ENST00000269318 TNS2Q63HR2 1409 aa20.57■□□□□ 0.88
CCDC40-201ENST00000269318 COPS6Q7L5N1 327 aa20.57■□□□□ 0.88
CCDC40-201ENST00000269318 BCL11AQ9H165 835 aa20.57■□□□□ 0.88
CCDC40-201ENST00000269318 SRGAP3O43295 1099 aa20.57■□□□□ 0.88
CCDC40-201ENST00000269318 RBM25P49756 843 aaKnown RBP20.57■□□□□ 0.88
CCDC40-201ENST00000269318 PDE1AP54750 535 aa20.57■□□□□ 0.88
CCDC40-201ENST00000269318 USP35Q9P2H5 1018 aa20.57■□□□□ 0.88
CCDC40-201ENST00000269318 IGKV5-2P06315 115 aa20.56■□□□□ 0.88
CCDC40-201ENST00000269318 C9orf78Q9NZ63 289 aaPredicted RBP20.56■□□□□ 0.88
CCDC40-201ENST00000269318 RIC3Q7Z5B4 369 aa20.55■□□□□ 0.88
CCDC40-201ENST00000269318 PLCH1Q4KWH8 1693 aa20.55■□□□□ 0.88
CCDC40-201ENST00000269318 ERBB4Q15303 1308 aa20.55■□□□□ 0.88
CCDC40-201ENST00000269318 GRM8O00222 908 aa20.55■□□□□ 0.88
CCDC40-201ENST00000269318 RAB11FIP3O75154 756 aa20.55■□□□□ 0.88
CCDC40-201ENST00000269318 SDSP20132 328 aa20.55■□□□□ 0.88
CCDC40-201ENST00000269318 METTL22Q9BUU2 404 aaPredicted RBP20.54■□□□□ 0.88
CCDC40-201ENST00000269318 BECN1Q14457 450 aa20.54■□□□□ 0.88
CCDC40-201ENST00000269318 HDAC5Q9UQL6 1122 aa20.54■□□□□ 0.88
CCDC40-201ENST00000269318 SURF6O75683 361 aaKnown RBP20.53■□□□□ 0.88
CCDC40-201ENST00000269318 PIP4K2AP48426 406 aaPredicted RBP20.53■□□□□ 0.88
CCDC40-201ENST00000269318 ANKRD13DQ6ZTN6 518 aa20.53■□□□□ 0.88
CCDC40-201ENST00000269318 PHLPP1O60346 1717 aa20.53■□□□□ 0.88
CCDC40-201ENST00000269318 NEURL1BA8MQ27 555 aa20.52■□□□□ 0.88
CCDC40-201ENST00000269318 KAZALD1Q96I82 304 aa20.52■□□□□ 0.88
CCDC40-201ENST00000269318 STAP2Q9UGK3 403 aa20.52■□□□□ 0.88
CCDC40-201ENST00000269318 TUBGCP6Q96RT7 1819 aa20.52■□□□□ 0.88
CCDC40-201ENST00000269318 NBPF26B4DH59 902 aa20.52■□□□□ 0.87
CCDC40-201ENST00000269318 MX1P20591 662 aa20.52■□□□□ 0.87
CCDC40-201ENST00000269318 NEXNQ0ZGT2 675 aa20.52■□□□□ 0.87
CCDC40-201ENST00000269318 NBPF14Q5TI25 921 aa20.52■□□□□ 0.87
CCDC40-201ENST00000269318 NBPF10Q6P3W6 841 aaKnown RBP20.52■□□□□ 0.87
CCDC40-201ENST00000269318 NBPF15Q8N660 670 aa20.52■□□□□ 0.87
CCDC40-201ENST00000269318 ARFGEF2Q9Y6D5 1785 aa20.51■□□□□ 0.87
CCDC40-201ENST00000269318 RHPN1Q8TCX5 695 aa20.5■□□□□ 0.87
CCDC40-201ENST00000269318 SUCLG2Q96I99 432 aa20.5■□□□□ 0.87
CCDC40-201ENST00000269318 TBC1D2Q9BYX2 928 aa20.5■□□□□ 0.87
CCDC40-201ENST00000269318 GCKRQ14397 625 aa20.5■□□□□ 0.87
CCDC40-201ENST00000269318 MYD88Q99836 296 aa20.5■□□□□ 0.87
CCDC40-201ENST00000269318 EIF5BO60841 1220 aaKnown RBP20.49■□□□□ 0.87
CCDC40-201ENST00000269318 KIF1BPQ96EK5 621 aa20.49■□□□□ 0.87
CCDC40-201ENST00000269318 TMOD3Q9NYL9 352 aa20.49■□□□□ 0.87
CCDC40-201ENST00000269318 WNK3Q9BYP7 1800 aa20.49■□□□□ 0.87
CCDC40-201ENST00000269318 AOX1Q06278 1338 aa20.49■□□□□ 0.87
CCDC40-201ENST00000269318 HSP90AB4PQ58FF6 505 aa20.48■□□□□ 0.87
CCDC40-201ENST00000269318 TSHZ3Q63HK5 1081 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms