RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 KIF20BQ96Q89 1820 aa15.75■□□□□ 0.11
SNX1-201ENST00000261889 KIF1AQ12756 1690 aa15.75■□□□□ 0.11
SNX1-201ENST00000261889 LARGE1O95461 756 aa15.75■□□□□ 0.11
SNX1-201ENST00000261889 FOSBP53539 338 aa15.75■□□□□ 0.11
SNX1-201ENST00000261889 MTHFSDQ2M296 383 aaKnown RBP15.75■□□□□ 0.11
SNX1-201ENST00000261889 PDLIM2Q96JY6 352 aa15.74■□□□□ 0.11
SNX1-201ENST00000261889 SRCIN1Q9C0H9 1055 aa15.74■□□□□ 0.11
SNX1-201ENST00000261889 CCDC9Q9Y3X0 531 aaKnown RBP15.74■□□□□ 0.11
SNX1-201ENST00000261889 CPSF1Q10570 1443 aaKnown RBP15.74■□□□□ 0.11
SNX1-201ENST00000261889 TRPM3Q9HCF6 1732 aaPredicted RBP15.74■□□□□ 0.11
SNX1-201ENST00000261889 NECAB1Q8N987 351 aa15.74■□□□□ 0.11
SNX1-201ENST00000261889 PHAXQ9H814 394 aaKnown RBP15.74■□□□□ 0.11
SNX1-201ENST00000261889 RPAP2Q8IXW5 612 aaPredicted RBP15.73■□□□□ 0.11
SNX1-201ENST00000261889 RASEFQ8IZ41 740 aa15.73■□□□□ 0.11
SNX1-201ENST00000261889 CHMP4BQ9H444 224 aaKnown RBP15.73■□□□□ 0.11
SNX1-201ENST00000261889 VPS37CA5D8V6 355 aaPredicted RBP15.73■□□□□ 0.11
SNX1-201ENST00000261889 ADCY5O95622 1261 aa15.73■□□□□ 0.11
SNX1-201ENST00000261889 A0A0U1RQG5 324 aaPredicted RBP15.73■□□□□ 0.11
SNX1-201ENST00000261889 WASLO00401 505 aaPredicted RBP15.73■□□□□ 0.11
SNX1-201ENST00000261889 CHMLP26374 656 aa15.73■□□□□ 0.11
SNX1-201ENST00000261889 RTF1Q92541 710 aaKnown RBP15.73■□□□□ 0.11
SNX1-201ENST00000261889 LRRCC1Q9C099 1032 aa15.73■□□□□ 0.11
SNX1-201ENST00000261889 SURF6O75683 361 aaKnown RBP15.72■□□□□ 0.11
SNX1-201ENST00000261889 BRD1O95696 1058 aa15.72■□□□□ 0.11
SNX1-201ENST00000261889 CCDC83Q8IWF9 413 aa15.72■□□□□ 0.11
SNX1-201ENST00000261889 FBXW7Q969H0 707 aa15.72■□□□□ 0.11
SNX1-201ENST00000261889 PTMSP20962 102 aa15.72■□□□□ 0.11
SNX1-201ENST00000261889 CWC22Q9HCG8 908 aaKnown RBP15.72■□□□□ 0.11
SNX1-201ENST00000261889 A0A087WWV3 80 aa15.71■□□□□ 0.11
SNX1-201ENST00000261889 RGS12O14924 1447 aa15.71■□□□□ 0.11
SNX1-201ENST00000261889 SSH2Q76I76 1423 aa15.71■□□□□ 0.11
SNX1-201ENST00000261889 MAP2P11137 1827 aaKnown RBP15.71■□□□□ 0.11
SNX1-201ENST00000261889 CHL1O00533 1208 aa15.7■□□□□ 0.1
SNX1-201ENST00000261889 AP5Z1O43299 807 aa15.7■□□□□ 0.1
SNX1-201ENST00000261889 GNAI2P04899 355 aa15.7■□□□□ 0.1
SNX1-201ENST00000261889 CLEC17AQ6ZS10 378 aa15.7■□□□□ 0.1
SNX1-201ENST00000261889 CCDC39Q9UFE4 941 aa15.7■□□□□ 0.1
SNX1-201ENST00000261889 PRR36Q9H6K5 1346 aa15.7■□□□□ 0.1
SNX1-201ENST00000261889 MAP3K19Q56UN5 1328 aa15.7■□□□□ 0.1
SNX1-201ENST00000261889 DNM1Q05193 864 aaKnown RBP15.7■□□□□ 0.1
SNX1-201ENST00000261889 LMOD3Q0VAK6 560 aa15.7■□□□□ 0.1
SNX1-201ENST00000261889 HMMRO75330 724 aa15.7■□□□□ 0.1
SNX1-201ENST00000261889 KIAA2012Q0VF49 1180 aa15.7■□□□□ 0.1
SNX1-201ENST00000261889 TCHHQ07283 1943 aa15.69■□□□□ 0.1
SNX1-201ENST00000261889 BRPF1P55201 1214 aaPredicted RBP15.69■□□□□ 0.1
SNX1-201ENST00000261889 FLIIQ13045 1269 aa15.69■□□□□ 0.1
SNX1-201ENST00000261889 CRYBG1Q9Y4K1 1723 aa15.69■□□□□ 0.1
SNX1-201ENST00000261889 ZNF500O60304 480 aaPredicted RBP15.69■□□□□ 0.1
SNX1-201ENST00000261889 CKAP2LQ8IYA6 745 aa15.69■□□□□ 0.1
SNX1-201ENST00000261889 MST1RQ04912 1400 aa15.69■□□□□ 0.1
SNX1-201ENST00000261889 STK3Q13188 491 aa15.69■□□□□ 0.1
SNX1-201ENST00000261889 OS9Q13438 667 aaPredicted RBP15.69■□□□□ 0.1
SNX1-201ENST00000261889 STK31Q9BXU1 1019 aa15.69■□□□□ 0.1
SNX1-201ENST00000261889 NHSL1Q5SYE7 1610 aa15.68■□□□□ 0.1
SNX1-201ENST00000261889 AK2P54819 239 aa15.68■□□□□ 0.1
SNX1-201ENST00000261889 NAA30Q147X3 362 aaPredicted RBP15.68■□□□□ 0.1
SNX1-201ENST00000261889 PYCARDQ9ULZ3 195 aa15.68■□□□□ 0.1
SNX1-201ENST00000261889 CASTP20810 708 aaKnown RBP15.67■□□□□ 0.1
SNX1-201ENST00000261889 ADCK5Q3MIX3 580 aa15.67■□□□□ 0.1
SNX1-201ENST00000261889 CCDC61Q9Y6R9 512 aa15.67■□□□□ 0.1
SNX1-201ENST00000261889 PA2G4Q9UQ80 394 aaKnown RBP15.67■□□□□ 0.1
SNX1-201ENST00000261889 NDUFB9Q9Y6M9 179 aa15.67■□□□□ 0.1
SNX1-201ENST00000261889 ALS2Q96Q42 1657 aa15.67■□□□□ 0.1
SNX1-201ENST00000261889 MCCP23508 829 aa15.67■□□□□ 0.1
SNX1-201ENST00000261889 TFIP11Q9UBB9 837 aaKnown RBP15.67■□□□□ 0.1
SNX1-201ENST00000261889 NBPF7P0C2Y1 421 aaPredicted RBP15.66■□□□□ 0.1
SNX1-201ENST00000261889 CEBPZQ03701 1054 aaKnown RBP15.66■□□□□ 0.1
SNX1-201ENST00000261889 ZNF710Q8N1W2 664 aa15.66■□□□□ 0.1
SNX1-201ENST00000261889 SYT1P21579 422 aa15.66■□□□□ 0.1
SNX1-201ENST00000261889 AMPHP49418 695 aa15.66■□□□□ 0.1
SNX1-201ENST00000261889 SASS6Q6UVJ0 657 aa15.66■□□□□ 0.1
SNX1-201ENST00000261889 SRGAP3O43295 1099 aa15.66■□□□□ 0.1
SNX1-201ENST00000261889 CHGBP05060 677 aa15.66■□□□□ 0.1
SNX1-201ENST00000261889 NOLC1Q14978 699 aaKnown RBP eCLIP15.66■□□□□ 0.1
SNX1-201ENST00000261889 PPP1R42Q7Z4L9 355 aa15.66■□□□□ 0.1
SNX1-201ENST00000261889 PIK3C2AO00443 1686 aa15.65■□□□□ 0.1
SNX1-201ENST00000261889 ACEP12821 1306 aa15.65■□□□□ 0.1
SNX1-201ENST00000261889 TMEM94Q12767 1356 aa15.65■□□□□ 0.1
SNX1-201ENST00000261889 PRPF40BQ6NWY9 871 aaKnown RBP15.65■□□□□ 0.1
SNX1-201ENST00000261889 MBD3O95983 291 aa15.65■□□□□ 0.1
SNX1-201ENST00000261889 ZBTB9Q96C00 473 aa15.65■□□□□ 0.1
SNX1-201ENST00000261889 ZNF335Q9H4Z2 1342 aaPredicted RBP15.65■□□□□ 0.1
SNX1-201ENST00000261889 KCNQ3O43525 872 aa15.64■□□□□ 0.09
SNX1-201ENST00000261889 LRMPQ12912 555 aa15.64■□□□□ 0.09
SNX1-201ENST00000261889 ATP2B3Q16720 1220 aa15.64■□□□□ 0.09
SNX1-201ENST00000261889 RUFY3Q7L099 469 aa15.64■□□□□ 0.09
SNX1-201ENST00000261889 TAF6LQ9Y6J9 622 aa15.64■□□□□ 0.09
SNX1-201ENST00000261889 SOS1Q07889 1333 aaPredicted RBP15.64■□□□□ 0.09
SNX1-201ENST00000261889 IBTKQ9P2D0 1353 aaPredicted RBP15.64■□□□□ 0.09
SNX1-201ENST00000261889 UBTFL1P0CB47 393 aaPredicted RBP15.64■□□□□ 0.09
SNX1-201ENST00000261889 PTH1RQ03431 593 aa15.64■□□□□ 0.09
SNX1-201ENST00000261889 PPP4R3BQ5MIZ7 849 aa15.64■□□□□ 0.09
SNX1-201ENST00000261889 NCBP3Q53F19 620 aaKnown RBP15.63■□□□□ 0.09
SNX1-201ENST00000261889 SIL1Q9H173 461 aa15.63■□□□□ 0.09
SNX1-201ENST00000261889 PRDM4Q9UKN5 801 aa15.63■□□□□ 0.09
SNX1-201ENST00000261889 PLEKHG3A1L390 1219 aa15.63■□□□□ 0.09
SNX1-201ENST00000261889 KCNJ4P48050 445 aa15.63■□□□□ 0.09
SNX1-201ENST00000261889 LUZP1Q86V48 1076 aa15.63■□□□□ 0.09
SNX1-201ENST00000261889 ERCC4Q92889 916 aaPredicted RBP15.63■□□□□ 0.09
SNX1-201ENST00000261889 DDX11Q96FC9 970 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms