RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 SMC5Q8IY18 1101 aa22.81■■□□□ 1.24
VIM-201ENST00000224237 DDX21Q9NR30 783 aaKnown RBP eCLIP22.81■■□□□ 1.24
VIM-201ENST00000224237 MEIS3Q99687 375 aa22.8■■□□□ 1.24
VIM-201ENST00000224237 RGS3P49796 1198 aa22.79■■□□□ 1.24
VIM-201ENST00000224237 PROSER3Q2NL68 480 aa22.79■■□□□ 1.24
VIM-201ENST00000224237 FNBP4Q8N3X1 1017 aaPredicted RBP22.79■■□□□ 1.24
VIM-201ENST00000224237 TMOD3Q9NYL9 352 aa22.79■■□□□ 1.24
VIM-201ENST00000224237 PDZRN3Q9UPQ7 1066 aa22.79■■□□□ 1.24
VIM-201ENST00000224237 ATP10DQ9P241 1426 aa22.79■■□□□ 1.24
VIM-201ENST00000224237 KCPQ6ZWJ8 1503 aa22.78■■□□□ 1.24
VIM-201ENST00000224237 DDB1Q16531 1140 aa22.77■■□□□ 1.24
VIM-201ENST00000224237 DNAAF4Q8WXU2 420 aa22.77■■□□□ 1.24
VIM-201ENST00000224237 ITGB4P16144 1822 aa22.77■■□□□ 1.24
VIM-201ENST00000224237 PI4KAP2A4QPH2 592 aa22.77■■□□□ 1.24
VIM-201ENST00000224237 PDIA6Q15084 440 aa22.77■■□□□ 1.24
VIM-201ENST00000224237 VPS72Q15906 364 aa22.77■■□□□ 1.24
VIM-201ENST00000224237 FAM98CQ17RN3 349 aaKnown RBP22.77■■□□□ 1.24
VIM-201ENST00000224237 MEX3CQ5U5Q3 659 aaKnown RBP22.77■■□□□ 1.24
VIM-201ENST00000224237 BARGINQ6ZT62 677 aa22.77■■□□□ 1.24
VIM-201ENST00000224237 RPAP2Q8IXW5 612 aaPredicted RBP22.77■■□□□ 1.24
VIM-201ENST00000224237 PI4KAP1Q8N8J0 262 aa22.77■■□□□ 1.24
VIM-201ENST00000224237 GCC1Q96CN9 775 aa22.77■■□□□ 1.24
VIM-201ENST00000224237 USP21Q9UK80 565 aa22.77■■□□□ 1.24
VIM-201ENST00000224237 GNAI3P08754 354 aa22.76■■□□□ 1.23
VIM-201ENST00000224237 SIRT2Q8IXJ6 389 aa22.76■■□□□ 1.23
VIM-201ENST00000224237 ADCY9O60503 1353 aa22.76■■□□□ 1.23
VIM-201ENST00000224237 PIGBQ92521 554 aa22.75■■□□□ 1.23
VIM-201ENST00000224237 SRCIN1Q9C0H9 1055 aa22.75■■□□□ 1.23
VIM-201ENST00000224237 USP16Q9Y5T5 823 aa22.75■■□□□ 1.23
VIM-201ENST00000224237 KAT6BQ8WYB5 2073 aa22.75■■□□□ 1.23
VIM-201ENST00000224237 DDX58O95786 925 aaKnown RBP22.75■■□□□ 1.23
VIM-201ENST00000224237 ANKRD44Q8N8A2 993 aa22.75■■□□□ 1.23
VIM-201ENST00000224237 DOT1LQ8TEK3 1739 aa22.74■■□□□ 1.23
VIM-201ENST00000224237 PTCD1O75127 700 aaKnown RBP22.74■■□□□ 1.23
VIM-201ENST00000224237 CEP85Q6P2H3 762 aa22.74■■□□□ 1.23
VIM-201ENST00000224237 KSR2Q6VAB6 950 aa22.74■■□□□ 1.23
VIM-201ENST00000224237 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.73■■□□□ 1.23
VIM-201ENST00000224237 GNAI2P04899 355 aa22.73■■□□□ 1.23
VIM-201ENST00000224237 ERBB4Q15303 1308 aa22.73■■□□□ 1.23
VIM-201ENST00000224237 BEND3Q5T5X7 828 aa22.73■■□□□ 1.23
VIM-201ENST00000224237 MARCH10Q8NA82 808 aaPredicted RBP22.73■■□□□ 1.23
VIM-201ENST00000224237 ASAP1Q9ULH1 1129 aa22.73■■□□□ 1.23
VIM-201ENST00000224237 PIP4K2AP48426 406 aaPredicted RBP22.72■■□□□ 1.23
VIM-201ENST00000224237 SYTL4Q96C24 671 aaPredicted RBP22.71■■□□□ 1.23
VIM-201ENST00000224237 MAP3K2Q9Y2U5 619 aa22.71■■□□□ 1.23
VIM-201ENST00000224237 BCL9O00512 1426 aa22.71■■□□□ 1.23
VIM-201ENST00000224237 AFF2P51816 1311 aa22.71■■□□□ 1.23
VIM-201ENST00000224237 MYL6BP14649 208 aa22.71■■□□□ 1.23
VIM-201ENST00000224237 PDE4AP27815 886 aa22.71■■□□□ 1.23
VIM-201ENST00000224237 NUCB1Q02818 461 aa22.71■■□□□ 1.23
VIM-201ENST00000224237 USP44Q9H0E7 712 aa22.7■■□□□ 1.22
VIM-201ENST00000224237 HMMRO75330 724 aa22.69■■□□□ 1.22
VIM-201ENST00000224237 LRP10Q7Z4F1 713 aa22.69■■□□□ 1.22
VIM-201ENST00000224237 BACH2Q9BYV9 841 aa22.69■■□□□ 1.22
VIM-201ENST00000224237 ATG3Q9NT62 314 aa22.69■■□□□ 1.22
VIM-201ENST00000224237 PRIM1P49642 420 aaKnown RBP22.68■■□□□ 1.22
VIM-201ENST00000224237 UBTFL1P0CB47 393 aaPredicted RBP22.68■■□□□ 1.22
VIM-201ENST00000224237 AIMP1Q12904 312 aaKnown RBP22.68■■□□□ 1.22
VIM-201ENST00000224237 ACSBG1Q96GR2 724 aa22.68■■□□□ 1.22
VIM-201ENST00000224237 ALDH1L1O75891 902 aa22.67■■□□□ 1.22
VIM-201ENST00000224237 CHD1LQ86WJ1 897 aa22.67■■□□□ 1.22
VIM-201ENST00000224237 VSIG10Q8N0Z9 540 aa22.67■■□□□ 1.22
VIM-201ENST00000224237 XAGE3Q8WTP9 111 aa22.67■■□□□ 1.22
VIM-201ENST00000224237 DCTPP1Q9H773 170 aa22.67■■□□□ 1.22
VIM-201ENST00000224237 A0A0G2JS52 829 aa22.66■■□□□ 1.22
VIM-201ENST00000224237 MYT1Q01538 1121 aa22.66■■□□□ 1.22
VIM-201ENST00000224237 COPS6Q7L5N1 327 aa22.66■■□□□ 1.22
VIM-201ENST00000224237 FAM161AQ3B820 660 aa22.66■■□□□ 1.22
VIM-201ENST00000224237 RIC3Q7Z5B4 369 aa22.66■■□□□ 1.22
VIM-201ENST00000224237 LINS1Q8NG48 757 aa22.65■■□□□ 1.22
VIM-201ENST00000224237 TEX13AQ9BXU3 409 aaPredicted RBP22.65■■□□□ 1.22
VIM-201ENST00000224237 IBTKQ9P2D0 1353 aaPredicted RBP22.65■■□□□ 1.22
VIM-201ENST00000224237 ANKRD45Q5TZF3 282 aa22.64■■□□□ 1.22
VIM-201ENST00000224237 LRRFIP2Q9Y608 721 aaKnown RBP22.64■■□□□ 1.22
VIM-201ENST00000224237 LNPKQ9C0E8 428 aa22.64■■□□□ 1.21
VIM-201ENST00000224237 THSD7AQ9UPZ6 1657 aa22.64■■□□□ 1.21
VIM-201ENST00000224237 ANKRD13DQ6ZTN6 518 aa22.63■■□□□ 1.21
VIM-201ENST00000224237 RBM42Q9BTD8 480 aaKnown RBP22.63■■□□□ 1.21
VIM-201ENST00000224237 NBPF26B4DH59 902 aa22.62■■□□□ 1.21
VIM-201ENST00000224237 A1BGP04217 495 aa22.62■■□□□ 1.21
VIM-201ENST00000224237 NEXNQ0ZGT2 675 aa22.62■■□□□ 1.21
VIM-201ENST00000224237 NBPF14Q5TI25 921 aa22.62■■□□□ 1.21
VIM-201ENST00000224237 NBPF10Q6P3W6 841 aaKnown RBP22.62■■□□□ 1.21
VIM-201ENST00000224237 NBPF15Q8N660 670 aa22.62■■□□□ 1.21
VIM-201ENST00000224237 GJD4Q96KN9 370 aaPredicted RBP22.62■■□□□ 1.21
VIM-201ENST00000224237 ATP8B2P98198 1209 aa22.62■■□□□ 1.21
VIM-201ENST00000224237 ARFGEF2Q9Y6D5 1785 aa22.61■■□□□ 1.21
VIM-201ENST00000224237 NBPF7P0C2Y1 421 aaPredicted RBP22.61■■□□□ 1.21
VIM-201ENST00000224237 C8orf34Q49A92 452 aa22.61■■□□□ 1.21
VIM-201ENST00000224237 DNAJC10Q8IXB1 793 aa22.61■■□□□ 1.21
VIM-201ENST00000224237 SLC4A9Q96Q91 983 aa22.61■■□□□ 1.21
VIM-201ENST00000224237 METTL22Q9BUU2 404 aaPredicted RBP22.61■■□□□ 1.21
VIM-201ENST00000224237 HDAC5Q9UQL6 1122 aa22.61■■□□□ 1.21
VIM-201ENST00000224237 ATRNO75882 1429 aa22.61■■□□□ 1.21
VIM-201ENST00000224237 C9orf78Q9NZ63 289 aaPredicted RBP22.6■■□□□ 1.21
VIM-201ENST00000224237 CWF19L2Q2TBE0 894 aaKnown RBP22.6■■□□□ 1.21
VIM-201ENST00000224237 KCNQ2O43526 872 aa22.59■■□□□ 1.21
VIM-201ENST00000224237 PLBD2Q8NHP8 589 aa22.59■■□□□ 1.21
VIM-201ENST00000224237 ZBTB47Q9UFB7 747 aaPredicted RBP22.59■■□□□ 1.21
VIM-201ENST00000224237 STARD3NLO95772 234 aa22.58■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms