RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 DEF6Q9H4E7 631 aa17.38■□□□□ 0.37
PTPRA-201ENST00000216877 LCMT1Q9UIC8 334 aa17.38■□□□□ 0.37
PTPRA-201ENST00000216877 TXLNBQ8N3L3 684 aa17.38■□□□□ 0.37
PTPRA-201ENST00000216877 MNS1Q8NEH6 495 aa17.38■□□□□ 0.37
PTPRA-201ENST00000216877 ST5P78524 1137 aa17.37■□□□□ 0.37
PTPRA-201ENST00000216877 ARGLU1Q9NWB6 273 aaPredicted RBP17.37■□□□□ 0.37
PTPRA-201ENST00000216877 A2MP01023 1474 aa17.37■□□□□ 0.37
PTPRA-201ENST00000216877 NEO1Q92859 1461 aa17.37■□□□□ 0.37
PTPRA-201ENST00000216877 C14orf37Q86TY3 774 aa17.37■□□□□ 0.37
PTPRA-201ENST00000216877 FAM200AQ8TCP9 573 aa17.37■□□□□ 0.37
PTPRA-201ENST00000216877 TNMDQ9H2S6 317 aa17.37■□□□□ 0.37
PTPRA-201ENST00000216877 PALD1Q9ULE6 856 aa17.37■□□□□ 0.37
PTPRA-201ENST00000216877 CASQ1P31415 396 aa17.37■□□□□ 0.37
PTPRA-201ENST00000216877 MCM2P49736 904 aa17.37■□□□□ 0.37
PTPRA-201ENST00000216877 MAP3K11Q16584 847 aa17.37■□□□□ 0.37
PTPRA-201ENST00000216877 FAM177A1Q8N128 213 aaPredicted RBP17.37■□□□□ 0.37
PTPRA-201ENST00000216877 UBXN4Q92575 508 aa17.37■□□□□ 0.37
PTPRA-201ENST00000216877 ERO1AQ96HE7 468 aa17.37■□□□□ 0.37
PTPRA-201ENST00000216877 NUP62CLQ9H1M0 184 aa17.37■□□□□ 0.37
PTPRA-201ENST00000216877 CFAP70Q5T0N1 1121 aa17.36■□□□□ 0.37
PTPRA-201ENST00000216877 BECN2A8MW95 431 aa17.36■□□□□ 0.37
PTPRA-201ENST00000216877 ICE2Q659A1 982 aa17.36■□□□□ 0.37
PTPRA-201ENST00000216877 ATP6V1DQ9Y5K8 247 aa17.36■□□□□ 0.37
PTPRA-201ENST00000216877 CT47B1P0C2W7 299 aaPredicted RBP17.35■□□□□ 0.37
PTPRA-201ENST00000216877 NOM1Q5C9Z4 860 aaKnown RBP17.35■□□□□ 0.37
PTPRA-201ENST00000216877 DDX54Q8TDD1 881 aaKnown RBP17.35■□□□□ 0.37
PTPRA-201ENST00000216877 MYCBPQ99417 103 aaPredicted RBP17.35■□□□□ 0.37
PTPRA-201ENST00000216877 PPIP5K1Q6PFW1 1433 aa17.35■□□□□ 0.37
PTPRA-201ENST00000216877 ADGRB3O60242 1522 aa17.35■□□□□ 0.37
PTPRA-201ENST00000216877 TTLL5Q6EMB2 1281 aa17.35■□□□□ 0.37
PTPRA-201ENST00000216877 SLC52A1Q9NWF4 448 aa17.35■□□□□ 0.37
PTPRA-201ENST00000216877 ZKSCAN7Q9P0L1 754 aaPredicted RBP17.35■□□□□ 0.37
PTPRA-201ENST00000216877 SEC31AO94979 1220 aaKnown RBP17.35■□□□□ 0.37
PTPRA-201ENST00000216877 TYRO3Q06418 890 aa17.35■□□□□ 0.37
PTPRA-201ENST00000216877 SYCP1Q15431 976 aa17.35■□□□□ 0.37
PTPRA-201ENST00000216877 FAM173BQ6P4H8 233 aa17.35■□□□□ 0.37
PTPRA-201ENST00000216877 CLGNO14967 610 aa17.34■□□□□ 0.37
PTPRA-201ENST00000216877 SMARCE1Q969G3 411 aa17.34■□□□□ 0.37
PTPRA-201ENST00000216877 NPC1L1Q9UHC9 1359 aa17.34■□□□□ 0.37
PTPRA-201ENST00000216877 TMEM132EQ6IEE7 984 aa17.34■□□□□ 0.37
PTPRA-201ENST00000216877 CNPY4Q8N129 248 aa17.34■□□□□ 0.37
PTPRA-201ENST00000216877 BICD2Q8TD16 824 aa17.34■□□□□ 0.37
PTPRA-201ENST00000216877 KIF1BO60333 1816 aa17.34■□□□□ 0.37
PTPRA-201ENST00000216877 DNAJC25Q9H1X3 360 aa17.34■□□□□ 0.37
PTPRA-201ENST00000216877 STX6O43752 255 aa17.33■□□□□ 0.37
PTPRA-201ENST00000216877 ZNF165P49910 485 aa17.33■□□□□ 0.37
PTPRA-201ENST00000216877 CLCN6P51797 869 aa17.33■□□□□ 0.37
PTPRA-201ENST00000216877 ZSCAN22P10073 491 aaPredicted RBP17.33■□□□□ 0.36
PTPRA-201ENST00000216877 AK7Q96M32 723 aa17.33■□□□□ 0.36
PTPRA-201ENST00000216877 TFIP11Q9UBB9 837 aaKnown RBP17.33■□□□□ 0.36
PTPRA-201ENST00000216877 USP16Q9Y5T5 823 aa17.33■□□□□ 0.36
PTPRA-201ENST00000216877 PREX1Q8TCU6 1659 aa17.33■□□□□ 0.36
PTPRA-201ENST00000216877 VGFO15240 615 aaPredicted RBP17.33■□□□□ 0.36
PTPRA-201ENST00000216877 PNMA6AP0CW24 399 aaPredicted RBP17.33■□□□□ 0.36
PTPRA-201ENST00000216877 CBX8Q9HC52 389 aa17.33■□□□□ 0.36
PTPRA-201ENST00000216877 TTC31Q49AM3 519 aaPredicted RBP17.32■□□□□ 0.36
PTPRA-201ENST00000216877 SLC4A10Q6U841 1118 aa17.32■□□□□ 0.36
PTPRA-201ENST00000216877 LEKR1Q6ZMV7 388 aa17.32■□□□□ 0.36
PTPRA-201ENST00000216877 ADGRL1O94910 1474 aa17.32■□□□□ 0.36
PTPRA-201ENST00000216877 ZNF446Q9NWS9 450 aa17.32■□□□□ 0.36
PTPRA-201ENST00000216877 EXOC6BQ9Y2D4 811 aa17.32■□□□□ 0.36
PTPRA-201ENST00000216877 JRKLQ9Y4A0 524 aa17.32■□□□□ 0.36
PTPRA-201ENST00000216877 ZNF75DP51815 510 aa17.31■□□□□ 0.36
PTPRA-201ENST00000216877 SLC26A8Q96RN1 970 aa17.31■□□□□ 0.36
PTPRA-201ENST00000216877 POLKQ9UBT6 870 aa17.31■□□□□ 0.36
PTPRA-201ENST00000216877 SYT1P21579 422 aa17.31■□□□□ 0.36
PTPRA-201ENST00000216877 OAS2P29728 719 aaKnown RBP17.31■□□□□ 0.36
PTPRA-201ENST00000216877 TSPYL6Q8N831 410 aa17.31■□□□□ 0.36
PTPRA-201ENST00000216877 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.31■□□□□ 0.36
PTPRA-201ENST00000216877 HAP1P54257 671 aaPredicted RBP17.31■□□□□ 0.36
PTPRA-201ENST00000216877 CCDC144BQ3MJ40 725 aa17.31■□□□□ 0.36
PTPRA-201ENST00000216877 CCDC144CPQ8IYA2 1237 aa17.31■□□□□ 0.36
PTPRA-201ENST00000216877 RRP15Q9Y3B9 282 aaKnown RBP17.31■□□□□ 0.36
PTPRA-201ENST00000216877 MAP4K4O95819 1239 aaPredicted RBP17.3■□□□□ 0.36
PTPRA-201ENST00000216877 CASTP20810 708 aaKnown RBP17.3■□□□□ 0.36
PTPRA-201ENST00000216877 CCDC83Q8IWF9 413 aa17.3■□□□□ 0.36
PTPRA-201ENST00000216877 DACT1Q9NYF0 836 aa17.3■□□□□ 0.36
PTPRA-201ENST00000216877 ABCC3O15438 1527 aa17.3■□□□□ 0.36
PTPRA-201ENST00000216877 GEMIN8Q9NWZ8 242 aaKnown RBP17.3■□□□□ 0.36
PTPRA-201ENST00000216877 POLR3AO14802 1390 aaPredicted RBP17.3■□□□□ 0.36
PTPRA-201ENST00000216877 URI1O94763 535 aaPredicted RBP17.3■□□□□ 0.36
PTPRA-201ENST00000216877 SNW1Q13573 536 aaKnown RBP17.3■□□□□ 0.36
PTPRA-201ENST00000216877 GGNBP2Q9H3C7 697 aa17.3■□□□□ 0.36
PTPRA-201ENST00000216877 NSD3Q9BZ95 1437 aa17.29■□□□□ 0.36
PTPRA-201ENST00000216877 EPC1Q9H2F5 836 aa17.29■□□□□ 0.36
PTPRA-201ENST00000216877 UGGT1Q9NYU2 1555 aa17.29■□□□□ 0.36
PTPRA-201ENST00000216877 CCDC69A6NI79 296 aa17.29■□□□□ 0.36
PTPRA-201ENST00000216877 CPA1P15085 419 aa17.29■□□□□ 0.36
PTPRA-201ENST00000216877 CEBPZQ03701 1054 aaKnown RBP17.29■□□□□ 0.36
PTPRA-201ENST00000216877 IBSPP21815 317 aaPredicted RBP17.28■□□□□ 0.36
PTPRA-201ENST00000216877 FMNL2Q96PY5 1086 aa17.28■□□□□ 0.36
PTPRA-201ENST00000216877 TRIM35Q9UPQ4 493 aa17.28■□□□□ 0.36
PTPRA-201ENST00000216877 CTR9Q6PD62 1173 aa17.28■□□□□ 0.36
PTPRA-201ENST00000216877 CCDC171Q6TFL3 1326 aa17.28■□□□□ 0.36
PTPRA-201ENST00000216877 A0A1B0GUL7 405 aa17.28■□□□□ 0.36
PTPRA-201ENST00000216877 F13A1P00488 732 aa17.28■□□□□ 0.36
PTPRA-201ENST00000216877 CHRM1P11229 460 aaPredicted RBP17.28■□□□□ 0.36
PTPRA-201ENST00000216877 LIG1P18858 919 aa17.28■□□□□ 0.36
PTPRA-201ENST00000216877 LRRN4CLQ8ND94 238 aa17.28■□□□□ 0.36
PTPRA-201ENST00000216877 NOP2P46087 812 aaKnown RBP17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 110.1 ms