RNA–Protein interactions for RNA: ENSMUST00000173369.1

Trim39-205, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

TSL 1 (best) BASIC

Gene Trim39, Length 2,914 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-205ENSMUST00000173369 Skida1Q80YR3 822 aa10.68□□□□□ -0.7
Trim39-205ENSMUST00000173369 Shank3Q4ACU6 1730 aa10.68□□□□□ -0.7
Trim39-205ENSMUST00000173369 Ly75Q60767 1723 aa10.68□□□□□ -0.7
Trim39-205ENSMUST00000173369 Ttc21aQ8C0S4 1314 aa10.68□□□□□ -0.7
Trim39-205ENSMUST00000173369 Apba2P98084 750 aa10.68□□□□□ -0.7
Trim39-205ENSMUST00000173369 Iqsec3Q3TES0 1195 aa10.68□□□□□ -0.7
Trim39-205ENSMUST00000173369 Srp68Q8BMA6 625 aaKnown RBP10.68□□□□□ -0.7
Trim39-205ENSMUST00000173369 Trip6Q9Z1Y4 480 aa10.68□□□□□ -0.7
Trim39-205ENSMUST00000173369 Vamp4O70480 141 aa10.68□□□□□ -0.7
Trim39-205ENSMUST00000173369 L3mbtl2P59178 703 aa10.68□□□□□ -0.7
Trim39-205ENSMUST00000173369 Sos2Q02384 1333 aa10.68□□□□□ -0.7
Trim39-205ENSMUST00000173369 Trpm3Q5F4S9 1721 aa10.67□□□□□ -0.7
Trim39-205ENSMUST00000173369 Ppp1r3fQ9JIG4 799 aa10.67□□□□□ -0.7
Trim39-205ENSMUST00000173369 Znf710Q3U288 666 aa10.67□□□□□ -0.7
Trim39-205ENSMUST00000173369 Ccar1Q8CH18 1146 aaKnown RBP10.67□□□□□ -0.7
Trim39-205ENSMUST00000173369 Flad1Q8R123 492 aa10.67□□□□□ -0.7
Trim39-205ENSMUST00000173369 Nsfl1cQ9CZ44 370 aaKnown RBP10.67□□□□□ -0.7
Trim39-205ENSMUST00000173369 Kif23E9Q5G3 953 aa10.66□□□□□ -0.7
Trim39-205ENSMUST00000173369 NudcO35685 332 aaKnown RBP10.66□□□□□ -0.7
Trim39-205ENSMUST00000173369 Jdp2P97875 163 aa10.66□□□□□ -0.7
Trim39-205ENSMUST00000173369 Gm12185Q5NCB2 835 aa10.66□□□□□ -0.7
Trim39-205ENSMUST00000173369 Ppm1fQ8CGA0 452 aa10.66□□□□□ -0.7
Trim39-205ENSMUST00000173369 CpzQ8R4V4 654 aa10.66□□□□□ -0.7
Trim39-205ENSMUST00000173369 Igsf1Q7TQA1 1317 aa10.65□□□□□ -0.7
Trim39-205ENSMUST00000173369 Taf7Q9R1C0 341 aa10.65□□□□□ -0.7
Trim39-205ENSMUST00000173369 Nsd3Q6P2L6 1439 aa10.65□□□□□ -0.7
Trim39-205ENSMUST00000173369 SafbD3YXK2 937 aaKnown RBP10.65□□□□□ -0.7
Trim39-205ENSMUST00000173369 Igflr1Q3U4N7 345 aa10.65□□□□□ -0.7
Trim39-205ENSMUST00000173369 Tjp1P39447 1745 aaKnown RBP10.65□□□□□ -0.7
Trim39-205ENSMUST00000173369 MeiocA2AG06 965 aa10.64□□□□□ -0.71
Trim39-205ENSMUST00000173369 Exoc6bA6H5Z3 810 aa10.64□□□□□ -0.71
Trim39-205ENSMUST00000173369 Map3k13Q1HKZ5 959 aa10.64□□□□□ -0.71
Trim39-205ENSMUST00000173369 Sv2bQ8BG39 683 aa10.64□□□□□ -0.71
Trim39-205ENSMUST00000173369 G3bp1P97855 465 aaKnown RBP10.64□□□□□ -0.71
Trim39-205ENSMUST00000173369 Plekhm2Q80TQ5 1018 aa10.64□□□□□ -0.71
Trim39-205ENSMUST00000173369 Atp1b3P97370 278 aa10.64□□□□□ -0.71
Trim39-205ENSMUST00000173369 RtcbQ99LF4 505 aaKnown RBP10.64□□□□□ -0.71
Trim39-205ENSMUST00000173369 Cyp2d11P24457 504 aa10.63□□□□□ -0.71
Trim39-205ENSMUST00000173369 Pde4dQ01063 747 aa10.63□□□□□ -0.71
Trim39-205ENSMUST00000173369 Rbm10Q99KG3 930 aaKnown RBP10.63□□□□□ -0.71
Trim39-205ENSMUST00000173369 KarsQ99MN1 595 aaKnown RBP10.63□□□□□ -0.71
Trim39-205ENSMUST00000173369 PsapQ61207 557 aaKnown RBP10.63□□□□□ -0.71
Trim39-205ENSMUST00000173369 Slf2Q6P9P0 1278 aa10.63□□□□□ -0.71
Trim39-205ENSMUST00000173369 Prr5lA2AVJ5 370 aa10.62□□□□□ -0.71
Trim39-205ENSMUST00000173369 Emilin1Q99K41 1017 aa10.62□□□□□ -0.71
Trim39-205ENSMUST00000173369 Rapgef4Q9EQZ6 1011 aa10.62□□□□□ -0.71
Trim39-205ENSMUST00000173369 Znf541Q0GGX2 1363 aa10.62□□□□□ -0.71
Trim39-205ENSMUST00000173369 Pank1Q8K4K6 548 aa10.62□□□□□ -0.71
Trim39-205ENSMUST00000173369 Cyp2c23E9Q5K4 494 aa10.61□□□□□ -0.71
Trim39-205ENSMUST00000173369 Dctn1O08788 1281 aa10.61□□□□□ -0.71
Trim39-205ENSMUST00000173369 Ankib1Q6ZPS6 1085 aa10.61□□□□□ -0.71
Trim39-205ENSMUST00000173369 Cnksr2Q80YA9 1032 aa10.61□□□□□ -0.71
Trim39-205ENSMUST00000173369 HmcesQ8R1M0 353 aaKnown RBP10.61□□□□□ -0.71
Trim39-205ENSMUST00000173369 Spryd3E9Q9B3 442 aa10.6□□□□□ -0.71
Trim39-205ENSMUST00000173369 Jarid2Q62315 1234 aa10.6□□□□□ -0.71
Trim39-205ENSMUST00000173369 1810065E05RikQ5NC41 235 aa10.6□□□□□ -0.71
Trim39-205ENSMUST00000173369 Map3k2Q61083 619 aa10.6□□□□□ -0.71
Trim39-205ENSMUST00000173369 Bicc1Q99MQ1 977 aaKnown RBP10.6□□□□□ -0.71
Trim39-205ENSMUST00000173369 Gigyf1Q99MR1 1044 aaKnown RBP10.6□□□□□ -0.71
Trim39-205ENSMUST00000173369 Ubr2Q6WKZ8 1755 aa10.6□□□□□ -0.71
Trim39-205ENSMUST00000173369 CoblQ5NBX1 1337 aaKnown RBP10.6□□□□□ -0.71
Trim39-205ENSMUST00000173369 Ric3Q8BPM6 367 aa10.59□□□□□ -0.71
Trim39-205ENSMUST00000173369 IncenpQ9WU62 880 aa10.59□□□□□ -0.71
Trim39-205ENSMUST00000173369 Msh6P54276 1358 aaKnown RBP10.59□□□□□ -0.71
Trim39-205ENSMUST00000173369 PappaQ8R4K8 1624 aa10.59□□□□□ -0.71
Trim39-205ENSMUST00000173369 Q3UPC7 1272 aa10.59□□□□□ -0.71
Trim39-205ENSMUST00000173369 BcanQ61361 883 aa10.59□□□□□ -0.71
Trim39-205ENSMUST00000173369 Mphosph10Q810V0 681 aaKnown RBP10.59□□□□□ -0.71
Trim39-205ENSMUST00000173369 Fbxo3Q9DC63 480 aa10.59□□□□□ -0.71
Trim39-205ENSMUST00000173369 Mylk2Q8VCR8 613 aa10.58□□□□□ -0.72
Trim39-205ENSMUST00000173369 NgdnQ9DB96 315 aaKnown RBP10.58□□□□□ -0.72
Trim39-205ENSMUST00000173369 Anp32aO35381 247 aa10.58□□□□□ -0.72
Trim39-205ENSMUST00000173369 CanxP35564 591 aaKnown RBP10.58□□□□□ -0.72
Trim39-205ENSMUST00000173369 Zap70P43404 618 aa10.58□□□□□ -0.72
Trim39-205ENSMUST00000173369 Chl1P70232 1209 aa10.58□□□□□ -0.72
Trim39-205ENSMUST00000173369 Esco1Q69Z69 843 aa10.58□□□□□ -0.72
Trim39-205ENSMUST00000173369 Amhr2Q8K592 568 aa10.58□□□□□ -0.72
Trim39-205ENSMUST00000173369 Kcnn1Q9EQR3 537 aa10.58□□□□□ -0.72
Trim39-205ENSMUST00000173369 Plekhh1Q80TI1 1356 aa10.58□□□□□ -0.72
Trim39-205ENSMUST00000173369 Tiam2Q6ZPF3 1715 aa10.58□□□□□ -0.72
Trim39-205ENSMUST00000173369 Lrrc43Q3V0L5 667 aa10.57□□□□□ -0.72
Trim39-205ENSMUST00000173369 CoilQ5SU73 570 aa10.57□□□□□ -0.72
Trim39-205ENSMUST00000173369 Irf9Q61179 399 aa10.57□□□□□ -0.72
Trim39-205ENSMUST00000173369 NmiO35309 314 aa10.57□□□□□ -0.72
Trim39-205ENSMUST00000173369 Ifit1bl2Q3U687 466 aa10.57□□□□□ -0.72
Trim39-205ENSMUST00000173369 Usp34Q6ZQ93 3582 aa10.57□□□□□ -0.72
Trim39-205ENSMUST00000173369 Abca3Q8R420 1704 aa10.57□□□□□ -0.72
Trim39-205ENSMUST00000173369 Nav1Q8CH77 1875 aa10.57□□□□□ -0.72
Trim39-205ENSMUST00000173369 Cfdp1O88271 295 aaKnown RBP10.57□□□□□ -0.72
Trim39-205ENSMUST00000173369 Rbm26Q6NZN0 1012 aaKnown RBP10.57□□□□□ -0.72
Trim39-205ENSMUST00000173369 Prom2Q3UUY6 835 aa10.56□□□□□ -0.72
Trim39-205ENSMUST00000173369 Tmem119Q8R138 280 aa10.56□□□□□ -0.72
Trim39-205ENSMUST00000173369 Disp3A3KFU9 1347 aa10.56□□□□□ -0.72
Trim39-205ENSMUST00000173369 Tcf3P15806 651 aa10.56□□□□□ -0.72
Trim39-205ENSMUST00000173369 Col23a1Q8K4G2 532 aa10.56□□□□□ -0.72
Trim39-205ENSMUST00000173369 Nlrp3Q8R4B8 1033 aa10.56□□□□□ -0.72
Trim39-205ENSMUST00000173369 Rwdd1Q9CQK7 243 aa10.56□□□□□ -0.72
Trim39-205ENSMUST00000173369 MetP16056 1379 aa10.55□□□□□ -0.72
Trim39-205ENSMUST00000173369 Cnksr1A2A9K7 700 aa10.55□□□□□ -0.72
Trim39-205ENSMUST00000173369 CltaO08585 235 aa10.55□□□□□ -0.72
Retrieved 100 of 22,080 RNA–protein pairs in 183.9 ms