RNA–Protein interactions for RNA: ENSMUST00000028728.5

Ubr1-201, Transcript of E3 ubiquitin-protein ligase UBR1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ubr1, Length 7,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr1-201ENSMUST00000028728 Ctage5Q8R311 779 aa11.74□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Ncapd2Q8K2Z4 1392 aa11.74□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Ampd3O08739 766 aa11.74□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Zkscan4Q5SZT6 480 aa11.74□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Cep131Q62036 1060 aa11.74□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Rsph10bE9PYQ0 876 aa11.73□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Akap2O54931 893 aa11.73□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Tyro3P55144 880 aa11.73□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Mrpl44Q9CY73 333 aaKnown RBP11.73□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Map7d1A2AJI0 846 aa11.73□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Nucb1Q02819 459 aaKnown RBP11.73□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Bcar3Q9QZK2 820 aa11.73□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Gm21680A0A0G2JGR8 267 aa11.73□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Bcl2l13P59017 434 aa11.73□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Caskin1Q6P9K8 1431 aa11.73□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Ddx46Q569Z5 1032 aaKnown RBP11.73□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Atp8b3Q6UQ17 1335 aa11.73□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Ttc21aQ8C0S4 1314 aa11.73□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Trim27Q62158 513 aa11.73□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Pip4k2bQ80XI4 416 aa11.73□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Hip1rQ9JKY5 1068 aa11.73□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Mkrn1Q9QXP6 481 aa11.73□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Syt10Q9R0N4 523 aa11.73□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Mlh3A0A1Y7VMP7 1443 aa11.73□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Pdia3P27773 505 aaKnown RBP11.73□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Slc26a8Q8R0C3 999 aa11.73□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Ggnbp2Q5SV77 696 aa11.72□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Spty2d1Q68FG3 682 aa11.72□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Ppfia1B2RXQ2 1266 aa11.72□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Plekhd1B2RPU2 505 aa11.72□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Stat1P42225 749 aa11.72□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Washc4Q3UMB9 1173 aa11.72□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Cep55Q8BT07 462 aa11.72□□□□□ -0.53
Ubr1-201ENSMUST00000028728 HnrnpmQ9D0E1 729 aaKnown RBP11.72□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Baiap2l1Q9DBJ3 514 aa11.71□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Dpf1Q9QX66 387 aa11.71□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Frmpd1A2AKB4 1549 aa11.71□□□□□ -0.53
Ubr1-201ENSMUST00000028728 Nap1l2P51860 460 aa11.71□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Ehbp1Q69ZW3 1231 aa11.71□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Tubb2aQ7TMM9 445 aa11.71□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Tubb2bQ9CWF2 445 aa11.71□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Exoc6bA6H5Z3 810 aa11.71□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Cnnm1Q0GA42 951 aa11.71□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Mnat1P51949 309 aa11.71□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Ppfibp1Q8C8U0 969 aaKnown RBP11.71□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Cep89Q9CZX2 791 aa11.71□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Ccdc186Q8C9S4 917 aa11.7□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Golga5Q9QYE6 729 aa11.7□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Sel1lQ9Z2G6 790 aa11.7□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Pde1cQ64338 706 aa11.7□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Bag3Q9JLV1 577 aaKnown RBP11.7□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Gm45015A0A140LII9 184 aa11.7□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Riok1Q922Q2 567 aa11.7□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Arhgef12Q8R4H2 1543 aaKnown RBP11.7□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Mcm5P49718 733 aa11.69□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Paip2Q9D6V8 124 aa11.69□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Rad50P70388 1312 aa11.69□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Skor1Q8BX46 964 aa11.69□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Ccdc172Q810N9 267 aa11.69□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Gimap6Q8K349 305 aa11.69□□□□□ -0.54
Ubr1-201ENSMUST00000028728 AcrbpQ3V140 540 aa11.69□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Aldh1l2Q8K009 923 aa11.69□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Polr3dQ91WD1 398 aa11.69□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Syt1P46096 421 aa11.69□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Esyt1Q3U7R1 1092 aaKnown RBP11.69□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Mctp2Q5RJH2 878 aa11.69□□□□□ -0.54
Ubr1-201ENSMUST00000028728 BcanQ61361 883 aa11.69□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Arfgap2Q99K28 520 aa11.69□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Abl1P00520 1123 aa11.68□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Rad23bP54728 416 aa11.68□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Shtn1Q8K2Q9 631 aa11.68□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Sdad1Q80UZ2 687 aaKnown RBP11.68□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Sdc2P43407 202 aa11.68□□□□□ -0.54
Ubr1-201ENSMUST00000028728 PdiltQ9DAN1 588 aa11.68□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Gbp1Q01514 589 aa11.68□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Trak2Q6P9N8 913 aa11.68□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Txndc16Q7TN22 820 aa11.68□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Krt23Q99PS0 422 aa11.67□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Sil1Q9EPK6 465 aa11.67□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Oas2E9Q9A9 742 aa11.67□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Cep120Q7TSG1 988 aa11.67□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Crocc2F6XLV1 1638 aa11.67□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Ppfibp2O35711 882 aa11.67□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Ccdc42Q5SV66 316 aa11.67□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Bin1O08539 588 aaKnown RBP11.67□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Gadd45bP22339 160 aa11.67□□□□□ -0.54
Ubr1-201ENSMUST00000028728 IqcgQ80W32 419 aa11.67□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Rnf34Q99KR6 376 aa11.67□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Cetn2Q9R1K9 172 aa11.67□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Dennd6aQ8BH65 605 aa11.67□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Ncbp3Q8BZR9 615 aaKnown RBP11.67□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Knop1Q9Z2Q2 478 aaKnown RBP11.67□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Cpsf1Q9EPU4 1441 aaKnown RBP11.66□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Fbf1A2A870 1173 aa11.66□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Top1Q04750 767 aaKnown RBP11.66□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Tsg101Q61187 391 aa11.66□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Uchl5Q9WUP7 329 aa11.66□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Camsap1A2AHC3 1581 aa11.66□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Six6os1Q9CTN5 574 aa11.66□□□□□ -0.54
Ubr1-201ENSMUST00000028728 Slx4ipQ9D7Y9 413 aa11.66□□□□□ -0.54
Retrieved 100 of 22,080 RNA–protein pairs in 65.1 ms