RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 COL1A1P02452 1464 aaPredicted RBP2.84□□□□□ -1.96
SCFD1-219ENST00000556413 HEPACAM2A8MVW5 462 aa2.83□□□□□ -1.96
SCFD1-219ENST00000556413 F5H0A9 414 aaPredicted RBP2.83□□□□□ -1.96
SCFD1-219ENST00000556413 MELTFP08582 738 aa2.83□□□□□ -1.96
SCFD1-219ENST00000556413 HOXD4P09016 255 aaPredicted RBP2.83□□□□□ -1.96
SCFD1-219ENST00000556413 ZNF853P0CG23 659 aa2.83□□□□□ -1.96
SCFD1-219ENST00000556413 GP9P14770 177 aa2.83□□□□□ -1.96
SCFD1-219ENST00000556413 CAPN3P20807 821 aa2.83□□□□□ -1.96
SCFD1-219ENST00000556413 LHCGRP22888 699 aa2.83□□□□□ -1.96
SCFD1-219ENST00000556413 ZFP36L2P47974 494 aaKnown RBP2.83□□□□□ -1.96
SCFD1-219ENST00000556413 FKBP1BP68106 108 aa2.83□□□□□ -1.96
SCFD1-219ENST00000556413 PRAMEP78395 509 aa2.83□□□□□ -1.96
SCFD1-219ENST00000556413 GUCY2DQ02846 1103 aa2.83□□□□□ -1.96
SCFD1-219ENST00000556413 GCKRQ14397 625 aa2.83□□□□□ -1.96
SCFD1-219ENST00000556413 MTF1Q14872 753 aa2.83□□□□□ -1.96
SCFD1-219ENST00000556413 SHROOM1Q2M3G4 852 aaPredicted RBP2.83□□□□□ -1.96
SCFD1-219ENST00000556413 AACSQ86V21 672 aa2.83□□□□□ -1.96
SCFD1-219ENST00000556413 KCNMB4Q86W47 210 aa2.83□□□□□ -1.96
SCFD1-219ENST00000556413 CATSPERDQ86XM0 798 aa2.83□□□□□ -1.96
SCFD1-219ENST00000556413 APOBEC3FQ8IUX4 373 aaKnown RBP2.83□□□□□ -1.96
SCFD1-219ENST00000556413 MCEMP1Q8IX19 187 aa2.83□□□□□ -1.96
SCFD1-219ENST00000556413 CFAP206Q8IYR0 622 aa2.83□□□□□ -1.96
SCFD1-219ENST00000556413 TTC39CQ8N584 583 aa2.83□□□□□ -1.96
SCFD1-219ENST00000556413 CCDC191Q8NCU4 936 aa2.83□□□□□ -1.96
SCFD1-219ENST00000556413 OR2AJ1Q8NGZ0 328 aa2.83□□□□□ -1.96
SCFD1-219ENST00000556413 ATP8B4Q8TF62 1192 aa2.83□□□□□ -1.96
SCFD1-219ENST00000556413 CHPT1Q8WUD6 406 aa2.83□□□□□ -1.96
SCFD1-219ENST00000556413 POMGNT1Q8WZA1 660 aa2.83□□□□□ -1.96
SCFD1-219ENST00000556413 TOMM40LQ969M1 308 aa2.83□□□□□ -1.96
SCFD1-219ENST00000556413 ERO1AQ96HE7 468 aa2.83□□□□□ -1.96
SCFD1-219ENST00000556413 ZNF577Q9BSK1 485 aa2.83□□□□□ -1.96
SCFD1-219ENST00000556413 COA1Q9GZY4 146 aa2.83□□□□□ -1.96
SCFD1-219ENST00000556413 PPIL3Q9H2H8 161 aaKnown RBP2.83□□□□□ -1.96
SCFD1-219ENST00000556413 CHMP1AQ9HD42 196 aaPredicted RBP2.83□□□□□ -1.96
SCFD1-219ENST00000556413 PPANQ9NQ55 473 aaKnown RBP2.83□□□□□ -1.96
SCFD1-219ENST00000556413 CTSZQ9UBR2 303 aa2.83□□□□□ -1.96
SCFD1-219ENST00000556413 FANCIQ9NVI1 1328 aa2.83□□□□□ -1.96
SCFD1-219ENST00000556413 OTOFQ9HC10 1997 aa2.83□□□□□ -1.96
SCFD1-219ENST00000556413 ANKRD18BA2A2Z9 1011 aa2.82□□□□□ -1.96
SCFD1-219ENST00000556413 DOK2O60496 412 aa2.82□□□□□ -1.96
SCFD1-219ENST00000556413 GLRA3O75311 464 aa2.82□□□□□ -1.96
SCFD1-219ENST00000556413 CDK2AP2O75956 126 aa2.82□□□□□ -1.96
SCFD1-219ENST00000556413 WDPCPO95876 746 aa2.82□□□□□ -1.96
SCFD1-219ENST00000556413 IGHEP01854 428 aa2.82□□□□□ -1.96
SCFD1-219ENST00000556413 RB1P06400 928 aa2.82□□□□□ -1.96
SCFD1-219ENST00000556413 CCL5P13501 91 aa2.82□□□□□ -1.96
SCFD1-219ENST00000556413 ADORA1P30542 326 aa2.82□□□□□ -1.96
SCFD1-219ENST00000556413 RPL21P46778 160 aaKnown RBP2.82□□□□□ -1.96
SCFD1-219ENST00000556413 CD300CQ08708 224 aa2.82□□□□□ -1.96
SCFD1-219ENST00000556413 CRYMQ14894 314 aa2.82□□□□□ -1.96
SCFD1-219ENST00000556413 TWISTNBQ3B726 338 aaPredicted RBP2.82□□□□□ -1.96
SCFD1-219ENST00000556413 FRRS1Q6ZNA5 592 aa2.82□□□□□ -1.96
SCFD1-219ENST00000556413 RTN4RL2Q86UN3 420 aa2.82□□□□□ -1.96
SCFD1-219ENST00000556413 TEX11Q8IYF3 940 aa2.82□□□□□ -1.96
SCFD1-219ENST00000556413 CEP57L1Q8IYX8 460 aa2.82□□□□□ -1.96
SCFD1-219ENST00000556413 ARHGAP24Q8N264 748 aa2.82□□□□□ -1.96
SCFD1-219ENST00000556413 OR1L3Q8NH93 324 aa2.82□□□□□ -1.96
SCFD1-219ENST00000556413 MOSPD2Q8NHP6 518 aa2.82□□□□□ -1.96
SCFD1-219ENST00000556413 C1orf147Q96MC9 270 aaPredicted RBP2.82□□□□□ -1.96
SCFD1-219ENST00000556413 URM1Q9BTM9 101 aaKnown RBP2.82□□□□□ -1.96
SCFD1-219ENST00000556413 LMF2Q9BU23 707 aaKnown RBP2.82□□□□□ -1.96
SCFD1-219ENST00000556413 DPAGT1Q9H3H5 408 aa2.82□□□□□ -1.96
SCFD1-219ENST00000556413 EIF2B3Q9NR50 452 aaKnown RBP2.82□□□□□ -1.96
SCFD1-219ENST00000556413 B3GAT1Q9P2W7 334 aa2.82□□□□□ -1.96
SCFD1-219ENST00000556413 DAPK2Q9UIK4 370 aa2.82□□□□□ -1.96
SCFD1-219ENST00000556413 COL6A3P12111 3177 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 LOC105371242A0A075B767 164 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 IGKV6D-21A0A0A0MT36 114 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 SHISA7A6NL88 538 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 A8MXK9 166 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 CDRT15L2A8MXV6 281 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 PTGES3LE9PB15 166 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 PDHXO00330 501 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 FRAT2O75474 233 aaPredicted RBP2.81□□□□□ -1.96
SCFD1-219ENST00000556413 BAIAP3O94812 1187 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 DDHD2O94830 711 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 HOXB7P09629 217 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 THEGLP0DJG4 465 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 SLC2A2P11168 524 aaPredicted RBP2.81□□□□□ -1.96
SCFD1-219ENST00000556413 MMP9P14780 707 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 HLA-FP30511 346 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 RXRGP48443 463 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 GCNT1Q02742 428 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 KRT33BQ14525 404 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 EFTUD2Q15029 972 aaKnown RBP eCLIP2.81□□□□□ -1.96
SCFD1-219ENST00000556413 HERC3Q15034 1050 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 RALBP1Q15311 655 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 PKN2Q16513 984 aaKnown RBP2.81□□□□□ -1.96
SCFD1-219ENST00000556413 SPDYCQ5MJ68 293 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 BEND3Q5T5X7 828 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 FAM166AQ6J272 317 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 TMEM154Q6P9G4 183 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 ADGRF2Q8IZF7 708 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 CDK20Q8IZL9 346 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 NPEPL1Q8NDH3 523 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 OR13C3Q8NGS6 347 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 RAET1EQ8TD07 263 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 U2AF1L4Q8WU68 220 aaKnown RBP2.81□□□□□ -1.96
SCFD1-219ENST00000556413 PGAM5Q96HS1 289 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 DEFB118Q96PH6 123 aa2.81□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms