RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 CTSBP07858 339 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 DHRS4L1P0CG22 281 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 CD22P20273 847 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 NR1D1P20393 614 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 BGNP21810 368 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 HNF4AP41235 474 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 GABRA4P48169 554 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 WDR4P57081 412 aaKnown RBP14.31□□□□□ -0.12
NUP54-213ENST00000513352 NAA20P61599 178 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 TRAF3Q13114 568 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 DDX39BQ13838 428 aaKnown RBP14.31□□□□□ -0.12
NUP54-213ENST00000513352 IL11RAQ14626 422 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 TBCCQ15814 346 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 CPSF6Q16630 551 aaKnown RBP eCLIP14.31□□□□□ -0.12
NUP54-213ENST00000513352 WASHC2DQ5SRD0 308 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 LIPJQ5W064 366 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 GRHL2Q6ISB3 625 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 MED27Q6P2C8 311 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.31□□□□□ -0.12
NUP54-213ENST00000513352 ZNF655Q8N720 491 aaPredicted RBP14.31□□□□□ -0.12
NUP54-213ENST00000513352 CSNK1A1LQ8N752 337 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 TTC29Q8NA56 475 aaPredicted RBP14.31□□□□□ -0.12
NUP54-213ENST00000513352 MFSD9Q8NBP5 474 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 OR4F6Q8NGB9 312 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 OR8K5Q8NH50 307 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 DYDC1Q8WWB3 177 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 PMEPA1Q969W9 287 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 NXPE2Q96DL1 559 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 THAP11Q96EK4 314 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 PRR11Q96HE9 360 aaPredicted RBP14.31□□□□□ -0.12
NUP54-213ENST00000513352 ZNF382Q96SR6 550 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 NRSN2Q9GZP1 204 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 SPRTNQ9H040 489 aaPredicted RBP14.31□□□□□ -0.12
NUP54-213ENST00000513352 MID1IP1Q9NPA3 183 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 FBXO8Q9NRD0 319 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 NEUROG3Q9Y4Z2 214 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 PCDHGA8Q9Y5G5 932 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 PCDHGA4Q9Y5G9 962 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 B3GALT1Q9Y5Z6 326 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 TRABD2BA6NFA1 517 aa14.3□□□□□ -0.12
NUP54-213ENST00000513352 ZSCAN9O15535 394 aaPredicted RBP14.3□□□□□ -0.12
NUP54-213ENST00000513352 NDUFS4O43181 175 aa14.3□□□□□ -0.12
NUP54-213ENST00000513352 SRPX2O60687 465 aaPredicted RBP14.3□□□□□ -0.12
NUP54-213ENST00000513352 UGDHO60701 494 aa14.3□□□□□ -0.12
NUP54-213ENST00000513352 SCRG1O75711 98 aa14.3□□□□□ -0.12
NUP54-213ENST00000513352 MSL3P1P0C860 447 aa14.3□□□□□ -0.12
NUP54-213ENST00000513352 HMOX2P30519 316 aa14.3□□□□□ -0.12
NUP54-213ENST00000513352 SCTRP47872 440 aa14.3□□□□□ -0.12
NUP54-213ENST00000513352 SLC18A1P54219 525 aa14.3□□□□□ -0.12
NUP54-213ENST00000513352 PKNOX1P55347 436 aa14.3□□□□□ -0.12
NUP54-213ENST00000513352 PHEXP78562 749 aa14.3□□□□□ -0.12
NUP54-213ENST00000513352 RCN2Q14257 317 aa14.3□□□□□ -0.12
NUP54-213ENST00000513352 ZRSR2Q15696 482 aaKnown RBP14.3□□□□□ -0.12
NUP54-213ENST00000513352 TCTE1Q5JU00 501 aa14.3□□□□□ -0.12
NUP54-213ENST00000513352 PRAMEF17Q5VTA0 474 aa14.3□□□□□ -0.12
NUP54-213ENST00000513352 LETMD1Q6P1Q0 360 aa14.3□□□□□ -0.12
NUP54-213ENST00000513352 SYVN1Q86TM6 617 aa14.3□□□□□ -0.12
NUP54-213ENST00000513352 ASPGQ86U10 573 aa14.3□□□□□ -0.12
NUP54-213ENST00000513352 CDYL2Q8N8U2 506 aa14.3□□□□□ -0.12
NUP54-213ENST00000513352 ANKRD53Q8N9V6 530 aa14.3□□□□□ -0.12
NUP54-213ENST00000513352 TTLQ8NG68 377 aa14.3□□□□□ -0.12
NUP54-213ENST00000513352 SLC13A3Q8WWT9 602 aa14.3□□□□□ -0.12
NUP54-213ENST00000513352 UBE2E3Q969T4 207 aa14.3□□□□□ -0.12
NUP54-213ENST00000513352 REPS1Q96D71 796 aa14.3□□□□□ -0.12
NUP54-213ENST00000513352 WDR34Q96EX3 536 aa14.3□□□□□ -0.12
NUP54-213ENST00000513352 CNDP1Q96KN2 507 aa14.3□□□□□ -0.12
NUP54-213ENST00000513352 OR2A5Q96R48 311 aa14.3□□□□□ -0.12
NUP54-213ENST00000513352 MACROD1Q9BQ69 325 aa14.3□□□□□ -0.12
NUP54-213ENST00000513352 NTMT1Q9BV86 223 aa14.3□□□□□ -0.12
NUP54-213ENST00000513352 DDA1Q9BW61 102 aa14.3□□□□□ -0.12
NUP54-213ENST00000513352 ASPSCR1Q9BZE9 553 aa14.3□□□□□ -0.12
NUP54-213ENST00000513352 ULBP3Q9BZM4 244 aa14.3□□□□□ -0.12
NUP54-213ENST00000513352 PITHD1Q9GZP4 211 aaPredicted RBP14.3□□□□□ -0.12
NUP54-213ENST00000513352 H3BQF6 201 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 P2RX6O15547 441 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 BRINP1O60477 761 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 NPHS1O60500 1241 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 WFS1O76024 890 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 SERPINE1P05121 402 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 SLC35G6P0C7Q6 338 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 FGF5P12034 268 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 CHN1P15882 459 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 CASP2P42575 452 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 ATP1A2P50993 1020 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 ERVPABLB-1P60509 514 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 RELAQ04206 551 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 RGS1Q08116 209 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 IFT88Q13099 833 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 CAMK2BQ13554 666 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 GRM7Q14831 915 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 HKDC1Q2TB90 917 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 LARP7Q4G0J3 582 aaKnown RBP eCLIP14.29□□□□□ -0.12
NUP54-213ENST00000513352 SGO1Q5FBB7 561 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 PWWP2BQ6NUJ5 590 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 TLDC1Q6P9B6 456 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 BPHLQ86WA6 291 aaPredicted RBP14.29□□□□□ -0.12
NUP54-213ENST00000513352 L3MBTL4Q8NA19 623 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 CAMKVQ8NCB2 501 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 ZCCHC10Q8TBK6 192 aa14.29□□□□□ -0.12
NUP54-213ENST00000513352 AGR3Q8TD06 166 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 381.5 ms