RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 NSMCE2Q96MF7 247 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 LRTM1Q9HBL6 345 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 RPS6KA6Q9UK32 745 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 FAM96BQ9Y3D0 163 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 RNF215Q9Y6U7 377 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 MYO5BQ9ULV0 1848 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 MON2Q7Z3U7 1717 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 CRYBG1Q9Y4K1 1723 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 CHD2O14647 1828 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 RIIAD1A6NNX1 92 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 FAM25AB3EWG3 89 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 FAM25CB3EWG5 89 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 FAM25GB3EWG6 89 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 TRIM38O00635 465 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 INMTO95050 263 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 FASTKQ14296 549 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 APOBEC4Q8WW27 367 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 EME1Q96AY2 570 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 FAXDC2Q96IV6 333 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 NANSQ9NR45 359 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 TMEM248Q9NWD8 314 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 ZNF35P13682 527 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 PTX3P26022 381 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 MTTPP55157 894 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 ENPEPQ07075 957 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 NNATQ16517 81 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 PDCD4Q53EL6 469 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 LRIF1Q5T3J3 769 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 TSTD2Q5T7W7 516 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 LRRC38Q5VT99 294 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 LHX8Q68G74 356 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 USP30Q70CQ3 517 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 WFDC8Q8IUA0 241 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 LRRC39Q96DD0 335 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 OLFM3Q96PB7 478 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 C1orf50Q9BV19 199 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 POLE3Q9NRF9 147 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 POT1Q9NUX5 634 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 FAIMQ9NVQ4 179 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 KPNA4O00629 521 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 TPP1O14773 563 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 THRAP10827 490 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 KIR2DL3P43628 341 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 GPLD1P80108 840 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 SLC7A9P82251 487 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 CACTIN-AS1Q8N1I8 211 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 ZNF808Q8N4W9 903 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 ACVR1CQ8NER5 493 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 TMIEQ8NEW7 156 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 GCDHQ92947 438 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 PSKH2Q96QS6 385 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 MTERF1Q99551 399 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 ZFYVE21Q9BQ24 234 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 MRPL57Q9BQC6 102 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 G6PC3Q9BUM1 346 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 SERHL2Q9H4I8 314 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 BRD7Q9NPI1 651 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 SERHLQ9NQF3 203 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 ATXN7L1Q9ULK2 861 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 TCAF1Q9Y4C2 921 aa8.91□□□□□ -0.98
LIMCH1-202ENST00000381753 VILLO15195 856 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 GALR2O43603 387 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 FAM20BO75063 409 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 HSMCR30P0CW71 290 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 SLC1A3P43003 542 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 KHDRBS1Q07666 443 aaKnown RBP eCLIP8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 GRIK2Q13002 908 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 SRSF5Q13243 272 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 IL18R1Q13478 541 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 DNAL1Q4LDG9 190 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 RINLQ6ZS11 566 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 SYT13Q7L8C5 426 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 SATL1Q86VE3 508 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 CHST14Q8NCH0 376 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 UBXN10Q96LJ8 280 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 SAP130Q9H0E3 1048 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 HRGP04196 525 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 LINC00032P0C843 101 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 PGM1P36871 562 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 SPIBQ01892 262 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 MZT1Q08AG7 82 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 NIPAL4Q0D2K0 466 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 CASP8Q14790 479 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 CYTH1Q15438 398 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 FAM26DQ5JW98 314 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 BORAQ6PGQ7 559 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 SPATA4Q8NEY3 305 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 PCYT2Q99447 389 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 SEPHS2Q99611 448 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 NOL11Q9H8H0 719 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 ENY2Q9NPA8 101 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 KCNJ16Q9NPI9 418 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 SLC35C2Q9NQQ7 365 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 PPM1HQ9ULR3 514 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 SERTM1A2A2V5 107 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 MEIS3P2A8K0S8 358 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 DVL2O14641 736 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 STX11O75558 287 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 SERPINA1P01009 418 aa8.9□□□□□ -0.98
LIMCH1-202ENST00000381753 GGT2P36268 569 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms