RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 G3V2T6 193 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 TMX2-CTNND1H3BSU7 103 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 PSMD9O00233 223 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 VILLO15195 856 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 HTRA2O43464 458 aaPredicted RBP10.19□□□□□ -0.78
LIG1-220ENST00000601091 TNFRSF21O75509 655 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 CPSF4O95639 269 aaKnown RBP10.19□□□□□ -0.78
LIG1-220ENST00000601091 ACVRL1P37023 503 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 TOP3AQ13472 1001 aaPredicted RBP10.19□□□□□ -0.78
LIG1-220ENST00000601091 KCNA10Q16322 511 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 EPHX4Q8IUS5 362 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 PM20D2Q8IYS1 436 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 KIAA1191Q96A73 305 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 DACH2Q96NX9 599 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 OSBPL6Q9BZF3 934 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 IPPKQ9H8X2 491 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 GALPQ9UBC7 116 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 PCDHB1Q9Y5F3 818 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 A6NJY4 79 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 AURKAO14965 403 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 SMAD9O15198 467 aaKnown RBP10.19□□□□□ -0.78
LIG1-220ENST00000601091 ECI2O75521 394 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 CDK14O94921 469 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 ESR1P03372 595 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 CD63P08962 238 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 HAPLN1P10915 354 aaPredicted RBP10.19□□□□□ -0.78
LIG1-220ENST00000601091 CTPS1P17812 591 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 GSK3BP49841 420 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 STC1P52823 247 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 CDH4P55283 916 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 EEFSECP57772 596 aaKnown RBP10.19□□□□□ -0.78
LIG1-220ENST00000601091 C1QTNF8P60827 252 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 CHRNEQ04844 493 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 CYP2A13Q16696 494 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 UNC50Q53HI1 259 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 UGT2A3Q6UWM9 527 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 RBFAQ8N0V3 343 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 OR10T2Q8NGX3 314 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 MRPS31Q92665 395 aaKnown RBP10.19□□□□□ -0.78
LIG1-220ENST00000601091 MARC2Q969Z3 335 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 RPL10LQ96L21 214 aaKnown RBP10.19□□□□□ -0.78
LIG1-220ENST00000601091 ZNF599Q96NL3 588 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 OR52E6Q96RD3 313 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 LRRC3Q9BY71 257 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 MOV10Q9HCE1 1003 aaKnown RBP10.19□□□□□ -0.78
LIG1-220ENST00000601091 FKBPLQ9UIM3 349 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 CEP350Q5VT06 3117 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 FAM234BA2RU67 622 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 LCHNA4D1U4 455 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 J3QRK9 145 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 ZNF623O75123 536 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 EOMESO95936 686 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 ALDH1A1P00352 501 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 ZNF37AP17032 561 aaPredicted RBP10.19□□□□□ -0.78
LIG1-220ENST00000601091 PTGER3P43115 390 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 GNPDA1P46926 289 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 STARP49675 285 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 GNG10P50151 68 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 EMP3P54852 163 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 FOXM1Q08050 763 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 PTPRCAPQ14761 206 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 CPSF6Q16630 551 aaKnown RBP eCLIP10.19□□□□□ -0.78
LIG1-220ENST00000601091 RAB41Q5JT25 222 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 DCDC5Q6ZRR9 648 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 FAM26EQ8N5C1 309 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 BPIFB6Q8NFQ5 453 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 ADAMTS16Q8TE57 1224 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 FBXL8Q96CD0 374 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 RANBP9Q96S59 729 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 C17orf62Q9BQA9 187 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 GORASP2Q9H8Y8 452 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 NMUR1Q9HB89 426 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 ZNF275Q9NSD4 429 aaPredicted RBP10.19□□□□□ -0.78
LIG1-220ENST00000601091 NUDT4Q9NZJ9 180 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 PADI4Q9UM07 663 aa10.19□□□□□ -0.78
LIG1-220ENST00000601091 ZFP37Q9Y6Q3 630 aaPredicted RBP10.19□□□□□ -0.78
LIG1-220ENST00000601091 NT5C1B-RDH14C9J2C7 533 aa10.18□□□□□ -0.78
LIG1-220ENST00000601091 SCAMP3O14828 347 aaKnown RBP10.18□□□□□ -0.78
LIG1-220ENST00000601091 TULP3O75386 442 aa10.18□□□□□ -0.78
LIG1-220ENST00000601091 C1RP00736 705 aa10.18□□□□□ -0.78
LIG1-220ENST00000601091 PSMB9P28065 219 aa10.18□□□□□ -0.78
LIG1-220ENST00000601091 YAP1P46937 504 aaKnown RBP10.18□□□□□ -0.78
LIG1-220ENST00000601091 FLT3LGP49771 235 aa10.18□□□□□ -0.78
LIG1-220ENST00000601091 C5orf22Q49AR2 442 aa10.18□□□□□ -0.78
LIG1-220ENST00000601091 ZNF789Q5FWF6 425 aa10.18□□□□□ -0.78
LIG1-220ENST00000601091 CCNYL2Q5T2Q4 361 aa10.18□□□□□ -0.78
LIG1-220ENST00000601091 INTS11Q5TA45 600 aaKnown RBP10.18□□□□□ -0.78
LIG1-220ENST00000601091 GARNL3Q5VVW2 1013 aa10.18□□□□□ -0.78
LIG1-220ENST00000601091 FAM151BQ6UXP7 276 aa10.18□□□□□ -0.78
LIG1-220ENST00000601091 NUP54Q7Z3B4 507 aa10.18□□□□□ -0.78
LIG1-220ENST00000601091 ISCA2Q86U28 154 aa10.18□□□□□ -0.78
LIG1-220ENST00000601091 CNTN4Q8IWV2 1026 aa10.18□□□□□ -0.78
LIG1-220ENST00000601091 TAGAPQ8N103 731 aa10.18□□□□□ -0.78
LIG1-220ENST00000601091 CBARPQ8N350 705 aaPredicted RBP10.18□□□□□ -0.78
LIG1-220ENST00000601091 SIDT2Q8NBJ9 832 aaKnown RBP10.18□□□□□ -0.78
LIG1-220ENST00000601091 OR5H6Q8NGV6 325 aa10.18□□□□□ -0.78
LIG1-220ENST00000601091 MCOLN3Q8TDD5 553 aa10.18□□□□□ -0.78
LIG1-220ENST00000601091 APOL4Q9BPW4 351 aa10.18□□□□□ -0.78
LIG1-220ENST00000601091 RRAGCQ9HB90 399 aa10.18□□□□□ -0.78
LIG1-220ENST00000601091 NME7Q9Y5B8 376 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms