RNA–Protein interactions for RNA: ENST00000566082.1

USB1-212, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2

Gene USB1, Length 3,888 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-212ENST00000566082 SLC2A11Q9BYW1 496 aa10.29□□□□□ -0.76
USB1-212ENST00000566082 SPRTNQ9H040 489 aaPredicted RBP10.29□□□□□ -0.76
USB1-212ENST00000566082 MMP27Q9H306 513 aa10.29□□□□□ -0.76
USB1-212ENST00000566082 KLHL1Q9NR64 748 aa10.29□□□□□ -0.76
USB1-212ENST00000566082 PCTPQ9UKL6 214 aa10.29□□□□□ -0.76
USB1-212ENST00000566082 CFL2Q9Y281 166 aa10.29□□□□□ -0.76
USB1-212ENST00000566082 PCDHGB3Q9Y5G1 929 aa10.29□□□□□ -0.76
USB1-212ENST00000566082 A0A0U1RQS6 177 aa10.29□□□□□ -0.76
USB1-212ENST00000566082 H7C4K7 107 aa10.29□□□□□ -0.76
USB1-212ENST00000566082 HAT1O14929 419 aa10.29□□□□□ -0.76
USB1-212ENST00000566082 ACSL4O60488 711 aa10.29□□□□□ -0.76
USB1-212ENST00000566082 CSF2P04141 144 aa10.29□□□□□ -0.76
USB1-212ENST00000566082 FYNP06241 537 aa10.29□□□□□ -0.76
USB1-212ENST00000566082 NR2F6P10588 404 aa10.29□□□□□ -0.76
USB1-212ENST00000566082 PABPC1P11940 636 aaKnown RBP10.29□□□□□ -0.76
USB1-212ENST00000566082 CORO1AP31146 461 aaKnown RBP10.29□□□□□ -0.76
USB1-212ENST00000566082 TIE1P35590 1138 aa10.29□□□□□ -0.76
USB1-212ENST00000566082 CCT3P49368 545 aaKnown RBP10.29□□□□□ -0.76
USB1-212ENST00000566082 RPP38P78345 283 aaKnown RBP10.29□□□□□ -0.76
USB1-212ENST00000566082 SELPLGQ14242 412 aa10.29□□□□□ -0.76
USB1-212ENST00000566082 TSTQ16762 297 aaKnown RBP10.29□□□□□ -0.76
USB1-212ENST00000566082 LETMD1Q6P1Q0 360 aa10.29□□□□□ -0.76
USB1-212ENST00000566082 CCDC149Q6ZUS6 474 aa10.29□□□□□ -0.76
USB1-212ENST00000566082 PAQR9Q6ZVX9 377 aa10.29□□□□□ -0.76
USB1-212ENST00000566082 SPRED1Q7Z699 444 aa10.29□□□□□ -0.76
USB1-212ENST00000566082 GALNT12Q8IXK2 581 aa10.29□□□□□ -0.76
USB1-212ENST00000566082 RGL4Q8IZJ4 473 aa10.29□□□□□ -0.76
USB1-212ENST00000566082 PIK3R3Q92569 461 aa10.29□□□□□ -0.76
USB1-212ENST00000566082 IGSF8Q969P0 613 aa10.29□□□□□ -0.76
USB1-212ENST00000566082 TMEM203Q969S6 136 aa10.29□□□□□ -0.76
USB1-212ENST00000566082 TIGARQ9NQ88 270 aa10.29□□□□□ -0.76
USB1-212ENST00000566082 DNAJC11Q9NVH1 559 aa10.29□□□□□ -0.76
USB1-212ENST00000566082 ERVK-11Q9UQG0 969 aa10.29□□□□□ -0.76
USB1-212ENST00000566082 SERPINB7O75635 380 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 IFI30P13284 250 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 ITGA1P56199 1179 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 TUBA1BP68363 451 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 EMX1Q04741 257 aaPredicted RBP10.28□□□□□ -0.76
USB1-212ENST00000566082 ZSWIM7Q19AV6 140 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 POM121L1PQ3SYA9 428 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 SMYD5Q6GMV2 418 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 TAPT1Q6NXT6 567 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 TRIM40Q6P9F5 258 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 ZNF517Q6ZMY9 492 aaPredicted RBP10.28□□□□□ -0.76
USB1-212ENST00000566082 NEK10Q6ZWH5 1172 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 TUBA1AQ71U36 451 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 ZNF598Q86UK7 904 aaKnown RBP10.28□□□□□ -0.76
USB1-212ENST00000566082 TICAM1Q8IUC6 712 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 LGI4Q8N135 537 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 SLC38A4Q969I6 547 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 Q96MT0 163 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 CDK5RAP1Q96SZ6 601 aaKnown RBP10.28□□□□□ -0.76
USB1-212ENST00000566082 ZDHHC6Q9H6R6 413 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 CCSER2Q9H7U1 834 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 TRIM45Q9H8W5 580 aaPredicted RBP10.28□□□□□ -0.76
USB1-212ENST00000566082 SGK2Q9HBY8 427 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 NECTIN3Q9NQS3 549 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 KCTD5Q9NXV2 234 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 GTF2IRD1Q9UHL9 959 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 ANKRD66B4E2M5 251 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 CASKO14936 926 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 CELF2O95319 508 aaKnown RBP10.28□□□□□ -0.76
USB1-212ENST00000566082 ITGB1P05556 798 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 ZNF157P51786 506 aaPredicted RBP10.28□□□□□ -0.76
USB1-212ENST00000566082 COX10Q12887 443 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 NAE1Q13564 534 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 ACOX1Q15067 660 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 PIK3R6Q5UE93 754 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 VTCN1Q7Z7D3 282 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 DSG4Q86SJ6 1040 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 SUN5Q8TC36 379 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 CSGALNACT1Q8TDX6 532 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 ATL1Q8WXF7 558 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 SGCDQ92629 289 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 UBXN10Q96LJ8 280 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 C8orf48Q96LL4 319 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 TEX37Q96LM6 180 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 YIPF2Q9BWQ6 316 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 NLNQ9BYT8 704 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 POLR2J2Q9GZM3 115 aaKnown RBP10.28□□□□□ -0.76
USB1-212ENST00000566082 SERHL2Q9H4I8 314 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 LTB4R2Q9NPC1 389 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 SERHLQ9NQF3 203 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 MIOSQ9NXC5 875 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 ANGPT4Q9Y264 503 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 AQP9O43315 295 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 ALPLP05186 524 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 PPP2R1BP30154 601 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 AFF1P51825 1210 aaKnown RBP10.28□□□□□ -0.76
USB1-212ENST00000566082 EMP3P54852 163 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 SMN1Q16637 294 aaKnown RBP10.28□□□□□ -0.76
USB1-212ENST00000566082 KDELC1Q6UW63 502 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 PROKR1Q8TCW9 393 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 UROC1Q96N76 676 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 ALPK1Q96QP1 1244 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 ATP13A3Q9H7F0 1226 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 BRD9Q9H8M2 597 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 ERVK13-1Q9NX77 482 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 POU2F3Q9UKI9 436 aa10.28□□□□□ -0.76
USB1-212ENST00000566082 PCDHA9Q9Y5H5 950 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms