RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 RTKNQ9BST9 563 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 ASPNQ9BXN1 380 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 NANOGQ9H9S0 305 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 AVENQ9NQS1 362 aaPredicted RBP9□□□□□ -0.97
LIMCH1-202ENST00000381753 CALML5Q9NZT1 146 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 ARHGAP33O14559 1287 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 UBDO15205 165 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 CDH16O75309 829 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 PEX19P40855 299 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 ZNF84P51523 738 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 TMPRSS3P57727 454 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 TMEM115Q12893 351 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 GBX1Q14549 363 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 RASA2Q15283 850 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 DEFB110Q30KQ9 67 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 KLHL12Q53G59 568 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 TEX44Q53QW1 395 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 DCST1Q5T197 706 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 OAFQ86UD1 273 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 PTRH1Q86Y79 214 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 CHFRQ96EP1 664 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 EPYCQ99645 322 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 EPB41L1Q9H4G0 881 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 RDH14Q9HBH5 336 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 FTCDNL1E5RQL4 147 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 SLCO1B7G3V0H7 640 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 FSCN2O14926 492 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 MT-CO3P00414 261 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 POU3F2P20265 443 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 RALGPS1Q5JS13 557 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 SLC30A6Q6NXT4 461 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 C9orf43Q8TAL5 461 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 LNX1Q8TBB1 728 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 IP6K3Q96PC2 410 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 KCTD14Q9BQ13 255 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 ACTL8Q9H568 366 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 MMP17Q9ULZ9 603 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 EMC9Q9Y3B6 208 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 PTPRZ1P23471 2315 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 KIR2DS5A0A0G2JLQ3 304 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 A0A0G2JNG1 304 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 PLSCR5A0PG75 271 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 KIR2DS3K7RE56 304 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 SCGB2A1O75556 95 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 RNH1P13489 461 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 ACVRL1P37023 503 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 CASP5P51878 434 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 RGS8P57771 180 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 SMIM11AP58511 58 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 RHAGQ02094 409 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 CHRNEQ04844 493 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 RASGEF1BQ0VAM2 473 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 KIR2DS5Q14953 304 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 GAREM2Q75VX8 874 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 GPR137CQ8N3F9 429 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 CATSPER1Q8NEC5 780 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 TMEM234Q8WY98 164 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 SLC35C1Q96A29 364 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 FEM1AQ9BSK4 669 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 C3orf18Q9UK00 162 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 SPAARA0A1B0GVQ0 90 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 PPEF2O14830 753 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 CTDNEP1O95476 244 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 ATP6V1B2P21281 511 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 CD40LGP29965 261 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 S100A5P33763 92 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 POU5F1Q01860 360 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 CD47Q08722 323 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 HERC3Q15034 1050 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 SF3A2Q15428 464 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 SLC9B1Q4ZJI4 515 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 EMBQ6PCB8 327 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 Q6ZVL8 140 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 NANOGNBQ7Z5D8 188 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 ABHD12BQ7Z5M8 362 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 CPT1CQ8TCG5 803 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 CYGBQ8WWM9 190 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 GAB3Q8WWW8 586 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 TEFMQ96QE5 360 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 PELOQ9BRX2 385 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 SMOC1Q9H4F8 434 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 GHRLQ9UBU3 117 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 PPT2Q9UMR5 302 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 TELO2Q9Y4R8 837 aa8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 COL16A1Q07092 1604 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-202ENST00000381753 TRAF2Q12933 501 aa8.98□□□□□ -0.97
LIMCH1-202ENST00000381753 PLGLAQ15195 96 aa8.98□□□□□ -0.97
LIMCH1-202ENST00000381753 VHLLQ6RSH7 139 aa8.98□□□□□ -0.97
LIMCH1-202ENST00000381753 MBOAT1Q6ZNC8 495 aa8.98□□□□□ -0.97
LIMCH1-202ENST00000381753 ASPGQ86U10 573 aa8.98□□□□□ -0.97
LIMCH1-202ENST00000381753 SLC26A11Q86WA9 606 aa8.98□□□□□ -0.97
LIMCH1-202ENST00000381753 KIAA0895Q8NCT3 520 aa8.98□□□□□ -0.97
LIMCH1-202ENST00000381753 SH3YL1Q96HL8 342 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-202ENST00000381753 GPR21Q99679 349 aa8.98□□□□□ -0.97
LIMCH1-202ENST00000381753 CHID1Q9BWS9 393 aa8.98□□□□□ -0.97
LIMCH1-202ENST00000381753 TLR10Q9BXR5 811 aa8.98□□□□□ -0.97
LIMCH1-202ENST00000381753 SMOC2Q9H3U7 446 aa8.98□□□□□ -0.97
LIMCH1-202ENST00000381753 SEMA4GQ9NTN9 838 aa8.98□□□□□ -0.97
LIMCH1-202ENST00000381753 BLOC1S6Q9UL45 172 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms