RNA–Protein interactions for RNA: YMR171C

EAR1, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene EAR1, Length 1,653 nt, Biotype protein coding, Subcellular localisation Cellular bud, Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
EAR1YMR171C HXT17P53631 564 aa5.72□□□□□ -1.49
EAR1YMR171C HXT15P54854 567 aa5.72□□□□□ -1.49
EAR1YMR171C TMA46Q12000 345 aaKnown RBP5.72□□□□□ -1.49
EAR1YMR171C TY4B-PA0A0B7P3V8 1104 aa5.72□□□□□ -1.49
EAR1YMR171C KIP3P53086 805 aaKnown RBP5.72□□□□□ -1.49
EAR1YMR171C SIW14P53965 281 aa5.72□□□□□ -1.49
EAR1YMR171C EEB1Q02891 456 aa5.72□□□□□ -1.49
EAR1YMR171C WRS1Q12109 432 aaKnown RBP5.72□□□□□ -1.49
EAR1YMR171C TY4A-HQ6Q5P6 413 aa5.72□□□□□ -1.49
EAR1YMR171C TRM3Q07527 1436 aa5.71□□□□□ -1.49
EAR1YMR171C SCP160P06105 1222 aaKnown RBP RIP-Chip data5.71□□□□□ -1.5not detected
EAR1YMR171C SAC7P17121 654 aa5.71□□□□□ -1.5
EAR1YMR171C GCV1P48015 400 aa5.71□□□□□ -1.5
EAR1YMR171C MEC3Q02574 474 aa5.71□□□□□ -1.5
EAR1YMR171C UTP5Q04177 643 aaKnown RBP5.71□□□□□ -1.5
EAR1YMR171C NUP192P47054 1683 aa5.71□□□□□ -1.5
EAR1YMR171C PRI2P20457 528 aa5.7□□□□□ -1.5
EAR1YMR171C RAD27P26793 382 aa5.7□□□□□ -1.5
EAR1YMR171C MTR4P47047 1073 aaKnown RBP5.7□□□□□ -1.5
EAR1YMR171C ROD1Q02805 837 aa5.7□□□□□ -1.5
EAR1YMR171C ELG1Q12050 791 aa5.7□□□□□ -1.5
EAR1YMR171C RPP0P05317 312 aaKnown RBP5.69□□□□□ -1.5
EAR1YMR171C DED1P06634 604 aaKnown RBP5.69□□□□□ -1.5
EAR1YMR171C ERS1P17261 260 aa5.69□□□□□ -1.5
EAR1YMR171C ARL1P38116 183 aaKnown RBP5.69□□□□□ -1.5
EAR1YMR171C PDR11P40550 1411 aa5.69□□□□□ -1.5
EAR1YMR171C EST2Q06163 884 aa5.69□□□□□ -1.5
EAR1YMR171C RER2P35196 286 aa5.69□□□□□ -1.5
EAR1YMR171C REI1P38344 393 aaPredicted RBP5.69□□□□□ -1.5
EAR1YMR171C ENT3P47160 408 aa5.69□□□□□ -1.5
EAR1YMR171C OPI10Q08202 246 aa5.69□□□□□ -1.5
EAR1YMR171C FAL1Q12099 399 aaKnown RBP5.69□□□□□ -1.5
EAR1YMR171C ADD66P36040 267 aa5.68□□□□□ -1.5
EAR1YMR171C YKL069WP36088 180 aa5.68□□□□□ -1.5
EAR1YMR171C SBE2P42223 864 aaKnown RBP5.68□□□□□ -1.5
EAR1YMR171C FAR11P53917 953 aa5.68□□□□□ -1.5
EAR1YMR171C NAB6Q03735 1134 aaKnown RBP RIP-Chip data5.68□□□□□ -1.5not detected
EAR1YMR171C YMR074CQ04773 145 aa5.68□□□□□ -1.5
EAR1YMR171C CDC45Q08032 650 aa5.68□□□□□ -1.5
EAR1YMR171C YOL098CQ12496 1037 aa5.68□□□□□ -1.5
EAR1YMR171C SNF2P22082 1703 aa5.68□□□□□ -1.5
EAR1YMR171C CFT1Q06632 1357 aaKnown RBP5.67□□□□□ -1.5
EAR1YMR171C TRP2P00899 507 aaKnown RBP5.67□□□□□ -1.5
EAR1YMR171C MKK2P32491 506 aa5.67□□□□□ -1.5
EAR1YMR171C MAE1P36013 669 aaKnown RBP5.67□□□□□ -1.5
EAR1YMR171C FPR3P38911 411 aaKnown RBP5.67□□□□□ -1.5
EAR1YMR171C BOI2P39969 1040 aa5.67□□□□□ -1.5
EAR1YMR171C VPS27P40343 622 aaKnown RBP5.67□□□□□ -1.5
EAR1YMR171C SPO74P45819 413 aa5.67□□□□□ -1.5
EAR1YMR171C DSE4P53753 1117 aa5.67□□□□□ -1.5
EAR1YMR171C ALG6Q12001 544 aaKnown RBP5.67□□□□□ -1.5
EAR1YMR171C AI1P03875 834 aa5.66□□□□□ -1.5
EAR1YMR171C BAS1P22035 811 aa5.66□□□□□ -1.5
EAR1YMR171C TRK2P28584 889 aa5.66□□□□□ -1.5
EAR1YMR171C RRM3P38766 723 aa5.66□□□□□ -1.5
EAR1YMR171C TYW3P53177 273 aa5.66□□□□□ -1.5
EAR1YMR171C YNR014WP53719 212 aa5.66□□□□□ -1.5
EAR1YMR171C GRX1P25373 110 aaKnown RBP5.66□□□□□ -1.5
EAR1YMR171C LYP1P32487 611 aa5.66□□□□□ -1.5
EAR1YMR171C TAT2P38967 592 aa5.66□□□□□ -1.5
EAR1YMR171C IOC3P43596 787 aa5.66□□□□□ -1.5
EAR1YMR171C YJL049WP47048 450 aa5.66□□□□□ -1.5
EAR1YMR171C YNR063WP53749 607 aa5.66□□□□□ -1.5
EAR1YMR171C RAT1Q02792 1006 aaKnown RBP5.66□□□□□ -1.5
EAR1YMR171C TDA5Q06417 326 aaKnown RBP5.66□□□□□ -1.5
EAR1YMR171C YLL054CQ12244 843 aa5.66□□□□□ -1.5
EAR1YMR171C AIM44Q99299 758 aa5.66□□□□□ -1.5
EAR1YMR171C SPE2P21182 396 aa5.65□□□□□ -1.51
EAR1YMR171C AFG2P32794 780 aa5.65□□□□□ -1.51
EAR1YMR171C ATG14P38270 344 aa5.65□□□□□ -1.51
EAR1YMR171C SPF1P39986 1215 aaKnown RBP5.65□□□□□ -1.51
EAR1YMR171C RKM2Q03942 479 aa5.65□□□□□ -1.51
EAR1YMR171C SYP1P25623 870 aaKnown RBP5.64□□□□□ -1.51
EAR1YMR171C ESC2Q06340 456 aa5.64□□□□□ -1.51
EAR1YMR171C SEA4P38164 1038 aa5.63□□□□□ -1.51
EAR1YMR171C YAR028WP39548 234 aa5.63□□□□□ -1.51
EAR1YMR171C YFL066CP43538 392 aa5.63□□□□□ -1.51
EAR1YMR171C YRB30P53107 440 aaPredicted RBP5.63□□□□□ -1.51
EAR1YMR171C YGR045CP53229 120 aa5.63□□□□□ -1.51
EAR1YMR171C YPL062WQ02781 134 aa5.63□□□□□ -1.51
EAR1YMR171C SPO20Q04359 397 aa5.63□□□□□ -1.51
EAR1YMR171C GAS5Q08193 484 aa5.63□□□□□ -1.51
EAR1YMR171C AVO1Q08236 1176 aa5.63□□□□□ -1.51
EAR1YMR171C YOR223WQ12015 292 aa5.63□□□□□ -1.51
EAR1YMR171C TY1A-NL1Q12391 440 aaKnown RBP5.63□□□□□ -1.51
EAR1YMR171C ABD1P32783 436 aaPredicted RBP5.63□□□□□ -1.51
EAR1YMR171C TIF35Q04067 274 aaKnown RBP5.63□□□□□ -1.51
EAR1YMR171C YLR225CQ05948 407 aaKnown RBP5.63□□□□□ -1.51
EAR1YMR171C THI72Q08579 599 aa5.63□□□□□ -1.51
EAR1YMR171C SRP40P32583 406 aaPredicted RBP5.62□□□□□ -1.51
EAR1YMR171C MOT2P34909 587 aaKnown RBP5.62□□□□□ -1.51
EAR1YMR171C CNN1P43618 361 aa5.62□□□□□ -1.51
EAR1YMR171C NCE103P53615 221 aa5.62□□□□□ -1.51
EAR1YMR171C ELA1P53861 379 aaPredicted RBP5.62□□□□□ -1.51
EAR1YMR171C DOT1Q04089 582 aaKnown RBP5.62□□□□□ -1.51
EAR1YMR171C IOC4Q04213 475 aa5.62□□□□□ -1.51
EAR1YMR171C NSE3Q05541 303 aa5.62□□□□□ -1.51
EAR1YMR171C TDA6Q06466 467 aa5.62□□□□□ -1.51
EAR1YMR171C DBP5P20449 482 aaKnown RBP5.61□□□□□ -1.51
EAR1YMR171C AGP1P25376 633 aa5.61□□□□□ -1.51
Retrieved 100 of 5,963 RNA–protein pairs in 7.2 ms