RNA–Protein interactions for RNA: ENST00000640482.1

VEGFA-230, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,065 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-230ENST00000640482 COL24A1Q17RW2 1714 aa34.02■■■■□ 3.04
VEGFA-230ENST00000640482 ATP6V1AP38606 617 aa34.02■■■■□ 3.04
VEGFA-230ENST00000640482 MAP3K5Q99683 1374 aa34.01■■■■□ 3.04
VEGFA-230ENST00000640482 LINC00116Q8NCU8 138 aa34■■■■□ 3.03
VEGFA-230ENST00000640482 AKAP4Q5JQC9 854 aa33.99■■■■□ 3.03
VEGFA-230ENST00000640482 ITPK1Q13572 414 aa33.98■■■■□ 3.03
VEGFA-230ENST00000640482 COL3A1P02461 1466 aaPredicted RBP33.98■■■■□ 3.03
VEGFA-230ENST00000640482 RBM42Q9BTD8 480 aaKnown RBP33.96■■■■□ 3.03
VEGFA-230ENST00000640482 SSFA2P28290 1259 aa33.95■■■■□ 3.03
VEGFA-230ENST00000640482 U2SURPO15042 1029 aaKnown RBP33.94■■■■□ 3.02
VEGFA-230ENST00000640482 PHF14O94880 888 aa33.94■■■■□ 3.02
VEGFA-230ENST00000640482 NFATC2IPQ8NCF5 419 aa33.94■■■■□ 3.02
VEGFA-230ENST00000640482 CFAP53Q96M91 514 aa33.94■■■■□ 3.02
VEGFA-230ENST00000640482 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP33.93■■■■□ 3.02
VEGFA-230ENST00000640482 MSL1Q68DK7 614 aa33.93■■■■□ 3.02
VEGFA-230ENST00000640482 KLHL34Q8N239 644 aa33.93■■■■□ 3.02
VEGFA-230ENST00000640482 UBR3Q6ZT12 1888 aa33.93■■■■□ 3.02
VEGFA-230ENST00000640482 ZNF831Q5JPB2 1677 aa33.91■■■■□ 3.02
VEGFA-230ENST00000640482 GNPATO15228 680 aa33.91■■■■□ 3.02
VEGFA-230ENST00000640482 AMIGO3Q86WK7 504 aa33.91■■■■□ 3.02
VEGFA-230ENST00000640482 MTHFSDQ2M296 383 aaKnown RBP33.9■■■■□ 3.02
VEGFA-230ENST00000640482 SCN11AQ9UI33 1791 aa33.9■■■■□ 3.02
VEGFA-230ENST00000640482 SLC4A9Q96Q91 983 aa33.89■■■■□ 3.02
VEGFA-230ENST00000640482 SLC52A2Q9HAB3 445 aa33.87■■■■□ 3.01
VEGFA-230ENST00000640482 RNMTO43148 476 aaKnown RBP33.86■■■■□ 3.01
VEGFA-230ENST00000640482 PTCD1O75127 700 aaKnown RBP33.86■■■■□ 3.01
VEGFA-230ENST00000640482 SMIM5Q71RC9 77 aa33.86■■■■□ 3.01
VEGFA-230ENST00000640482 LGR6Q9HBX8 967 aa33.86■■■■□ 3.01
VEGFA-230ENST00000640482 YY1P25490 414 aa33.85■■■■□ 3.01
VEGFA-230ENST00000640482 PPP2R1AP30153 589 aa33.85■■■■□ 3.01
VEGFA-230ENST00000640482 RC3H1Q5TC82 1133 aaKnown RBP33.84■■■■□ 3.01
VEGFA-230ENST00000640482 RTCBQ9Y3I0 505 aaKnown RBP33.84■■■■□ 3.01
VEGFA-230ENST00000640482 CNTNAP4Q9C0A0 1308 aa33.83■■■■□ 3.01
VEGFA-230ENST00000640482 NUDCQ9Y266 331 aa33.83■■■■□ 3.01
VEGFA-230ENST00000640482 MRC1P22897 1456 aa33.82■■■■□ 3.01
VEGFA-230ENST00000640482 GAS2L2Q8NHY3 880 aa33.81■■■■□ 3
VEGFA-230ENST00000640482 COL5A3P25940 1745 aaPredicted RBP33.81■■■■□ 3
VEGFA-230ENST00000640482 TRAPPC3LQ5T215 181 aa33.79■■■■□ 3
VEGFA-230ENST00000640482 ADAMTS7Q9UKP4 1686 aa33.78■■■■□ 3
VEGFA-230ENST00000640482 ADRA2BP18089 450 aa33.78■■■■□ 3
VEGFA-230ENST00000640482 GPR162Q16538 588 aa33.77■■■■□ 3
VEGFA-230ENST00000640482 NLGN2Q8NFZ4 835 aa33.77■■■■□ 3
VEGFA-230ENST00000640482 RPS6KA4O75676 772 aa33.76■■■□□ 2.99
VEGFA-230ENST00000640482 CD2APQ9Y5K6 639 aa33.75■■■□□ 2.99
VEGFA-230ENST00000640482 GNAT3A8MTJ3 354 aa33.74■■■□□ 2.99
VEGFA-230ENST00000640482 PRKAR2BP31323 418 aa33.74■■■□□ 2.99
VEGFA-230ENST00000640482 RSPH6AQ9H0K4 717 aa33.74■■■□□ 2.99
VEGFA-230ENST00000640482 CICQ96RK0 1608 aaPredicted RBP33.74■■■□□ 2.99
VEGFA-230ENST00000640482 VIRMAQ69YN4 1812 aaKnown RBP33.73■■■□□ 2.99
VEGFA-230ENST00000640482 U2AF1L5P0DN76 240 aaPredicted RBP33.72■■■□□ 2.99
VEGFA-230ENST00000640482 CRKLP46109 303 aaKnown RBP33.72■■■□□ 2.99
VEGFA-230ENST00000640482 U2AF1Q01081 240 aaKnown RBP eCLIP33.72■■■□□ 2.992e-10■□□□□ 9.4
VEGFA-230ENST00000640482 SLC39A6Q13433 755 aa33.72■■■□□ 2.99
VEGFA-230ENST00000640482 ARHGEF1Q92888 912 aaKnown RBP33.72■■■□□ 2.99
VEGFA-230ENST00000640482 TJP1Q07157 1748 aa33.71■■■□□ 2.99
VEGFA-230ENST00000640482 RFC4P35249 363 aa33.71■■■□□ 2.99
VEGFA-230ENST00000640482 PELP1Q8IZL8 1130 aaKnown RBP33.71■■■□□ 2.99
VEGFA-230ENST00000640482 TEFQ10587 303 aa33.69■■■□□ 2.98
VEGFA-230ENST00000640482 NLGN1Q8N2Q7 840 aa33.68■■■□□ 2.98
VEGFA-230ENST00000640482 PHACTR3Q96KR7 559 aa33.68■■■□□ 2.98
VEGFA-230ENST00000640482 FCHSD2O94868 740 aa33.67■■■□□ 2.98
VEGFA-230ENST00000640482 DNAJC10Q8IXB1 793 aa33.67■■■□□ 2.98
VEGFA-230ENST00000640482 IL17REQ8NFR9 667 aa33.67■■■□□ 2.98
VEGFA-230ENST00000640482 KCPQ6ZWJ8 1503 aa33.67■■■□□ 2.98
VEGFA-230ENST00000640482 MYH14Q7Z406 1995 aaKnown RBP33.66■■■□□ 2.98
VEGFA-230ENST00000640482 TTC5Q8N0Z6 440 aa33.66■■■□□ 2.98
VEGFA-230ENST00000640482 MMP10P09238 476 aa33.65■■■□□ 2.98
VEGFA-230ENST00000640482 VSIG10Q8N0Z9 540 aa33.65■■■□□ 2.98
VEGFA-230ENST00000640482 UTRNP46939 3433 aa33.63■■■□□ 2.97
VEGFA-230ENST00000640482 INTS5Q6P9B9 1019 aaKnown RBP33.63■■■□□ 2.97
VEGFA-230ENST00000640482 CCDC87Q9NVE4 849 aa33.63■■■□□ 2.97
VEGFA-230ENST00000640482 GYS1P13807 737 aa33.62■■■□□ 2.97
VEGFA-230ENST00000640482 C4AP0C0L4 1744 aa33.61■■■□□ 2.97
VEGFA-230ENST00000640482 CEMIPQ8WUJ3 1361 aa33.6■■■□□ 2.97
VEGFA-230ENST00000640482 CYP19A1P11511 503 aaPredicted RBP33.6■■■□□ 2.97
VEGFA-230ENST00000640482 GRIN3BO60391 1043 aa33.59■■■□□ 2.97
VEGFA-230ENST00000640482 UBR2Q8IWV8 1755 aa33.59■■■□□ 2.97
VEGFA-230ENST00000640482 ZNF790Q6PG37 636 aa33.58■■■□□ 2.97
VEGFA-230ENST00000640482 RTF1Q92541 710 aaKnown RBP33.58■■■□□ 2.97
VEGFA-230ENST00000640482 USP42Q9H9J4 1324 aaKnown RBP33.57■■■□□ 2.97
VEGFA-230ENST00000640482 YBX3P16989 372 aaKnown RBP eCLIP33.57■■■□□ 2.96
VEGFA-230ENST00000640482 CHD4Q14839 1912 aa33.57■■■□□ 2.96
VEGFA-230ENST00000640482 SOS1Q07889 1333 aaPredicted RBP33.56■■■□□ 2.96
VEGFA-230ENST00000640482 NEFMP07197 916 aa33.56■■■□□ 2.96
VEGFA-230ENST00000640482 SIPA1L3O60292 1781 aaPredicted RBP33.56■■■□□ 2.96
VEGFA-230ENST00000640482 RALBP1Q15311 655 aa33.55■■■□□ 2.96
VEGFA-230ENST00000640482 SRP68Q9UHB9 627 aaKnown RBP33.55■■■□□ 2.96
VEGFA-230ENST00000640482 PARP3Q9Y6F1 533 aa33.55■■■□□ 2.96
VEGFA-230ENST00000640482 STARD3NLO95772 234 aa33.54■■■□□ 2.96
VEGFA-230ENST00000640482 DDX10Q13206 875 aaKnown RBP33.54■■■□□ 2.96
VEGFA-230ENST00000640482 ZNF496Q96IT1 587 aaPredicted RBP33.54■■■□□ 2.96
VEGFA-230ENST00000640482 HEG1Q9ULI3 1381 aa33.53■■■□□ 2.96
VEGFA-230ENST00000640482 BTBD11A6QL63 1104 aa33.53■■■□□ 2.96
VEGFA-230ENST00000640482 ZBTB1Q9Y2K1 713 aa33.53■■■□□ 2.96
VEGFA-230ENST00000640482 ZPR1O75312 459 aa33.52■■■□□ 2.96
VEGFA-230ENST00000640482 TEX13AQ9BXU3 409 aaPredicted RBP33.52■■■□□ 2.96
VEGFA-230ENST00000640482 HTATSF1O43719 755 aaKnown RBP33.51■■■□□ 2.95
VEGFA-230ENST00000640482 FMNL2Q96PY5 1086 aa33.51■■■□□ 2.95
VEGFA-230ENST00000640482 COL15A1P39059 1388 aa33.5■■■□□ 2.95
VEGFA-230ENST00000640482 FKBP8Q14318 412 aa33.5■■■□□ 2.95
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms