RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 SCN11AQ9UI33 1791 aa17.39■□□□□ 0.37
GTF3A-209ENST00000640289 PLSCR1O15162 318 aa17.39■□□□□ 0.37
GTF3A-209ENST00000640289 TEFQ10587 303 aa17.39■□□□□ 0.37
GTF3A-209ENST00000640289 ASAP1Q9ULH1 1129 aa17.39■□□□□ 0.37
GTF3A-209ENST00000640289 TRIM35Q9UPQ4 493 aa17.39■□□□□ 0.37
GTF3A-209ENST00000640289 ITGB4P16144 1822 aa17.38■□□□□ 0.37
GTF3A-209ENST00000640289 ATG3Q9NT62 314 aa17.38■□□□□ 0.37
GTF3A-209ENST00000640289 PROM2Q8N271 834 aa17.37■□□□□ 0.37
GTF3A-209ENST00000640289 PALLDQ8WX93 1383 aa17.37■□□□□ 0.37
GTF3A-209ENST00000640289 LMOD3Q0VAK6 560 aa17.36■□□□□ 0.37
GTF3A-209ENST00000640289 SLC39A6Q13433 755 aa17.36■□□□□ 0.37
GTF3A-209ENST00000640289 DLG5Q8TDM6 1919 aa17.36■□□□□ 0.37
GTF3A-209ENST00000640289 KCNQ4P56696 695 aa17.35■□□□□ 0.37
GTF3A-209ENST00000640289 TXNRD1Q16881 649 aa17.35■□□□□ 0.37
GTF3A-209ENST00000640289 SALL2Q9Y467 1007 aaPredicted RBP17.35■□□□□ 0.37
GTF3A-209ENST00000640289 KAT6BQ8WYB5 2073 aa17.35■□□□□ 0.37
GTF3A-209ENST00000640289 SMARCC1Q92922 1105 aaPredicted RBP17.34■□□□□ 0.37
GTF3A-209ENST00000640289 BTBD11A6QL63 1104 aa17.33■□□□□ 0.36
GTF3A-209ENST00000640289 LRRC4BQ9NT99 713 aa17.33■□□□□ 0.36
GTF3A-209ENST00000640289 MIS18AQ9NYP9 233 aa17.33■□□□□ 0.36
GTF3A-209ENST00000640289 VIRMAQ69YN4 1812 aaKnown RBP17.33■□□□□ 0.36
GTF3A-209ENST00000640289 KCNQ3O43525 872 aa17.32■□□□□ 0.36
GTF3A-209ENST00000640289 PTCD1O75127 700 aaKnown RBP17.32■□□□□ 0.36
GTF3A-209ENST00000640289 TAF7Q15545 349 aaPredicted RBP17.32■□□□□ 0.36
GTF3A-209ENST00000640289 RBM42Q9BTD8 480 aaKnown RBP17.32■□□□□ 0.36
GTF3A-209ENST00000640289 CCNL1Q9UK58 526 aaPredicted RBP17.32■□□□□ 0.36
GTF3A-209ENST00000640289 SLC4A9Q96Q91 983 aa17.31■□□□□ 0.36
GTF3A-209ENST00000640289 LOC102724428A0A0B4J2F2 783 aa17.3■□□□□ 0.36
GTF3A-209ENST00000640289 SIK1P57059 783 aa17.3■□□□□ 0.36
GTF3A-209ENST00000640289 ZNF790Q6PG37 636 aa17.3■□□□□ 0.36
GTF3A-209ENST00000640289 TTC5Q8N0Z6 440 aa17.3■□□□□ 0.36
GTF3A-209ENST00000640289 RGPD3A6NKT7 1758 aaPredicted RBP17.3■□□□□ 0.36
GTF3A-209ENST00000640289 SIPA1L3O60292 1781 aaPredicted RBP17.3■□□□□ 0.36
GTF3A-209ENST00000640289 RGPD4Q7Z3J3 1758 aa17.3■□□□□ 0.36
GTF3A-209ENST00000640289 PAPPAQ13219 1627 aa17.29■□□□□ 0.36
GTF3A-209ENST00000640289 CCDC27Q2M243 656 aa17.29■□□□□ 0.36
GTF3A-209ENST00000640289 SLC27A3Q5K4L6 730 aa17.29■□□□□ 0.36
GTF3A-209ENST00000640289 WWC1Q8IX03 1113 aa17.29■□□□□ 0.36
GTF3A-209ENST00000640289 RREB1Q92766 1687 aa17.29■□□□□ 0.36
GTF3A-209ENST00000640289 KCPQ6ZWJ8 1503 aa17.28■□□□□ 0.36
GTF3A-209ENST00000640289 LY75O60449 1722 aa17.28■□□□□ 0.36
GTF3A-209ENST00000640289 ATP6V1AP38606 617 aa17.28■□□□□ 0.36
GTF3A-209ENST00000640289 ITPK1Q13572 414 aa17.28■□□□□ 0.36
GTF3A-209ENST00000640289 ZNF496Q96IT1 587 aaPredicted RBP17.28■□□□□ 0.36
GTF3A-209ENST00000640289 LAS1LQ9Y4W2 734 aaKnown RBP17.28■□□□□ 0.36
GTF3A-209ENST00000640289 NCBP3Q53F19 620 aaKnown RBP17.27■□□□□ 0.36
GTF3A-209ENST00000640289 TSPYL4Q9UJ04 414 aa17.27■□□□□ 0.36
GTF3A-209ENST00000640289 ANO8Q9HCE9 1232 aaPredicted RBP17.26■□□□□ 0.35
GTF3A-209ENST00000640289 NUP188Q5SRE5 1749 aa17.26■□□□□ 0.35
GTF3A-209ENST00000640289 CHL1O00533 1208 aa17.25■□□□□ 0.35
GTF3A-209ENST00000640289 LINC00116Q8NCU8 138 aa17.25■□□□□ 0.35
GTF3A-209ENST00000640289 ZNF827Q17R98 1081 aa17.24■□□□□ 0.35
GTF3A-209ENST00000640289 DNAJC10Q8IXB1 793 aa17.24■□□□□ 0.35
GTF3A-209ENST00000640289 CFAP44Q96MT7 982 aa17.24■□□□□ 0.35
GTF3A-209ENST00000640289 FMNL2Q96PY5 1086 aa17.24■□□□□ 0.35
GTF3A-209ENST00000640289 HEG1Q9ULI3 1381 aa17.24■□□□□ 0.35
GTF3A-209ENST00000640289 PRAMEF22A3QJZ6 481 aa17.23■□□□□ 0.35
GTF3A-209ENST00000640289 ZNF853P0CG23 659 aa17.23■□□□□ 0.35
GTF3A-209ENST00000640289 EIF4A1P60842 406 aaKnown RBP17.23■□□□□ 0.35
GTF3A-209ENST00000640289 CALD1Q05682 793 aaKnown RBP17.23■□□□□ 0.35
GTF3A-209ENST00000640289 NGEFQ8N5V2 710 aa17.23■□□□□ 0.35
GTF3A-209ENST00000640289 MBIPQ9NS73 344 aa17.23■□□□□ 0.35
GTF3A-209ENST00000640289 IFT57Q9NWB7 429 aa17.23■□□□□ 0.35
GTF3A-209ENST00000640289 BABAM1Q9NWV8 329 aa17.23■□□□□ 0.35
GTF3A-209ENST00000640289 UBR2Q8IWV8 1755 aa17.23■□□□□ 0.35
GTF3A-209ENST00000640289 GNAI1P63096 354 aa17.22■□□□□ 0.35
GTF3A-209ENST00000640289 VSIG10Q8N0Z9 540 aa17.22■□□□□ 0.35
GTF3A-209ENST00000640289 KDM3BQ7LBC6 1761 aa17.22■□□□□ 0.35
GTF3A-209ENST00000640289 ZNF521Q96K83 1311 aa17.21■□□□□ 0.35
GTF3A-209ENST00000640289 SLC15A2Q16348 729 aa17.21■□□□□ 0.35
GTF3A-209ENST00000640289 NBPF14Q5TI25 921 aa17.21■□□□□ 0.35
GTF3A-209ENST00000640289 WDR63Q8IWG1 891 aa17.21■□□□□ 0.35
GTF3A-209ENST00000640289 AKT1S1Q96B36 256 aa17.21■□□□□ 0.35
GTF3A-209ENST00000640289 SPINK5Q9NQ38 1064 aaPredicted RBP17.21■□□□□ 0.35
GTF3A-209ENST00000640289 STK32BQ9NY57 414 aa17.21■□□□□ 0.35
GTF3A-209ENST00000640289 HNRNPUQ00839 825 aaKnown RBP eCLIP17.2■□□□□ 0.34
GTF3A-209ENST00000640289 KRT24Q2M2I5 525 aa17.2■□□□□ 0.34
GTF3A-209ENST00000640289 TSR2Q969E8 191 aaKnown RBP17.2■□□□□ 0.34
GTF3A-209ENST00000640289 TJP1Q07157 1748 aa17.2■□□□□ 0.34
GTF3A-209ENST00000640289 IL16Q14005 1332 aa17.2■□□□□ 0.34
GTF3A-209ENST00000640289 C5P01031 1676 aa17.2■□□□□ 0.34
GTF3A-209ENST00000640289 PSDA5PKW4 1024 aaPredicted RBP17.19■□□□□ 0.34
GTF3A-209ENST00000640289 SNRPA1P09661 255 aaKnown RBP17.19■□□□□ 0.34
GTF3A-209ENST00000640289 R3HDM1Q15032 1099 aaKnown RBP17.19■□□□□ 0.34
GTF3A-209ENST00000640289 USP16Q9Y5T5 823 aa17.19■□□□□ 0.34
GTF3A-209ENST00000640289 ZNF831Q5JPB2 1677 aa17.19■□□□□ 0.34
GTF3A-209ENST00000640289 GIGYF1O75420 1035 aaPredicted RBP17.18■□□□□ 0.34
GTF3A-209ENST00000640289 CYP19A1P11511 503 aaPredicted RBP17.18■□□□□ 0.34
GTF3A-209ENST00000640289 CRKLP46109 303 aaKnown RBP17.18■□□□□ 0.34
GTF3A-209ENST00000640289 SMIM5Q71RC9 77 aa17.18■□□□□ 0.34
GTF3A-209ENST00000640289 AMIGO3Q86WK7 504 aa17.18■□□□□ 0.34
GTF3A-209ENST00000640289 AK7Q96M32 723 aa17.18■□□□□ 0.34
GTF3A-209ENST00000640289 C4BP0C0L5 1744 aa17.18■□□□□ 0.34
GTF3A-209ENST00000640289 CICQ96RK0 1608 aaPredicted RBP17.18■□□□□ 0.34
GTF3A-209ENST00000640289 TAF1LQ8IZX4 1826 aa17.17■□□□□ 0.34
GTF3A-209ENST00000640289 TFCP2L1Q9NZI6 479 aa17.17■□□□□ 0.34
GTF3A-209ENST00000640289 CNTNAP4Q9C0A0 1308 aa17.17■□□□□ 0.34
GTF3A-209ENST00000640289 GNPATO15228 680 aa17.16■□□□□ 0.34
GTF3A-209ENST00000640289 INTS5Q6P9B9 1019 aaKnown RBP17.16■□□□□ 0.34
GTF3A-209ENST00000640289 TEX13AQ9BXU3 409 aaPredicted RBP17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms