RNA–Protein interactions for RNA: ENST00000635120.1

CSMD1-218, Transcript of CUB and Sushi multiple domains 1, human

APPRIS P2 TSL 5 BASIC

Gene CSMD1, Length 11,737 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSMD1-218	ENST00000635120	CCDC85A	Q96PX6	553 aa	Predicted RBP	10.62	□□□□□ -0.71
CSMD1-218	ENST00000635120	KIAA1107	Q9UPP5	1409 aa		10.62	□□□□□ -0.71
CSMD1-218	ENST00000635120	IL1RAPL2	Q9NP60	686 aa		10.62	□□□□□ -0.71
CSMD1-218	ENST00000635120	PLEKHH2	Q8IVE3	1493 aa		10.62	□□□□□ -0.71
CSMD1-218	ENST00000635120	IDH1	O75874	414 aa	Known RBP	10.62	□□□□□ -0.71
CSMD1-218	ENST00000635120	NUTM1	Q86Y26	1132 aa		10.61	□□□□□ -0.71
CSMD1-218	ENST00000635120	AIDA	Q96BJ3	306 aa		10.61	□□□□□ -0.71
CSMD1-218	ENST00000635120	CCDC97	Q96F63	343 aa	Predicted RBP	10.61	□□□□□ -0.71
CSMD1-218	ENST00000635120	CCDC178	Q5BJE1	867 aa		10.61	□□□□□ -0.71
CSMD1-218	ENST00000635120	SLC12A5	Q9H2X9	1139 aa		10.61	□□□□□ -0.71
CSMD1-218	ENST00000635120	ZSCAN12	O43309	604 aa		10.61	□□□□□ -0.71
CSMD1-218	ENST00000635120	TMEM57	Q8N5G2	664 aa		10.61	□□□□□ -0.71
CSMD1-218	ENST00000635120	CGN	Q9P2M7	1197 aa	Known RBP	10.61	□□□□□ -0.71
CSMD1-218	ENST00000635120	NSD3	Q9BZ95	1437 aa		10.61	□□□□□ -0.71
CSMD1-218	ENST00000635120	POLR3G	O15318	223 aa	Predicted RBP	10.61	□□□□□ -0.71
CSMD1-218	ENST00000635120	TOM1L2	Q6ZVM7	507 aa		10.61	□□□□□ -0.71
CSMD1-218	ENST00000635120	BBX	Q8WY36	941 aa	Predicted RBP	10.61	□□□□□ -0.71
CSMD1-218	ENST00000635120	GSTTP1	A0A1W2PQM5	241 aa		10.61	□□□□□ -0.71
CSMD1-218	ENST00000635120	C16orf45	Q96MC5	204 aa	Predicted RBP	10.61	□□□□□ -0.71
CSMD1-218	ENST00000635120	GBP3	Q9H0R5	595 aa		10.61	□□□□□ -0.71
CSMD1-218	ENST00000635120	CLIP2	Q9UDT6	1046 aa		10.61	□□□□□ -0.71
CSMD1-218	ENST00000635120	VPS36	Q86VN1	386 aa		10.61	□□□□□ -0.71
CSMD1-218	ENST00000635120	CABP1	Q9NZU7	370 aa		10.61	□□□□□ -0.71
CSMD1-218	ENST00000635120	RRS1	Q15050	365 aa	Known RBP	10.6	□□□□□ -0.71
CSMD1-218	ENST00000635120	NKTR	P30414	1462 aa	Known RBP	10.6	□□□□□ -0.71
CSMD1-218	ENST00000635120	DDX54	Q8TDD1	881 aa	Known RBP	10.6	□□□□□ -0.71
CSMD1-218	ENST00000635120	CBX1	P83916	185 aa		10.6	□□□□□ -0.71
CSMD1-218	ENST00000635120	EXOC6B	Q9Y2D4	811 aa		10.6	□□□□□ -0.71
CSMD1-218	ENST00000635120	HFM1	A2PYH4	1435 aa		10.6	□□□□□ -0.71
CSMD1-218	ENST00000635120	TOP1	P11387	765 aa	Known RBP	10.6	□□□□□ -0.71
CSMD1-218	ENST00000635120	XPC	Q01831	940 aa	Predicted RBP	10.6	□□□□□ -0.71
CSMD1-218	ENST00000635120	PNISR	Q8TF01	805 aa	Known RBP	10.6	□□□□□ -0.71
CSMD1-218	ENST00000635120	UBA5	Q9GZZ9	404 aa		10.6	□□□□□ -0.71
CSMD1-218	ENST00000635120	CEP126	Q9P2H0	1117 aa		10.6	□□□□□ -0.71
CSMD1-218	ENST00000635120	CC2D2A	Q9P2K1	1620 aa		10.6	□□□□□ -0.71
CSMD1-218	ENST00000635120	MACROD2	A1Z1Q3	448 aa		10.6	□□□□□ -0.71
CSMD1-218	ENST00000635120	CCDC83	Q8IWF9	413 aa		10.6	□□□□□ -0.71
CSMD1-218	ENST00000635120	NUP88	Q99567	741 aa	Predicted RBP	10.6	□□□□□ -0.71
CSMD1-218	ENST00000635120	SPG7	Q9UQ90	795 aa		10.6	□□□□□ -0.71
CSMD1-218	ENST00000635120	TRIM21	P19474	475 aa	Known RBP	10.6	□□□□□ -0.71
CSMD1-218	ENST00000635120	TXNDC2	Q86VQ3	553 aa		10.6	□□□□□ -0.71
CSMD1-218	ENST00000635120	CTNNBL1	Q8WYA6	563 aa	Predicted RBP	10.6	□□□□□ -0.71
CSMD1-218	ENST00000635120	ANKRD30B	Q9BXX2	1392 aa		10.6	□□□□□ -0.71
CSMD1-218	ENST00000635120	PLEKHH1	Q9ULM0	1364 aa		10.6	□□□□□ -0.71
CSMD1-218	ENST00000635120	FKBP15	Q5T1M5	1219 aa		10.6	□□□□□ -0.71
CSMD1-218	ENST00000635120	RNF187	Q5TA31	235 aa	Predicted RBP	10.6	□□□□□ -0.71
CSMD1-218	ENST00000635120	PRPF40B	Q6NWY9	871 aa	Known RBP	10.6	□□□□□ -0.71
CSMD1-218	ENST00000635120	SMARCA5	O60264	1052 aa	Predicted RBP	10.6	□□□□□ -0.71
CSMD1-218	ENST00000635120	MCM3	P25205	808 aa		10.6	□□□□□ -0.71
CSMD1-218	ENST00000635120	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	10.6	□□□□□ -0.71
CSMD1-218	ENST00000635120	GPATCH11	Q8N954	259 aa		10.59	□□□□□ -0.71
CSMD1-218	ENST00000635120	CETN2	P41208	172 aa		10.59	□□□□□ -0.71
CSMD1-218	ENST00000635120	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	10.59	□□□□□ -0.71
CSMD1-218	ENST00000635120	TMX1	Q9H3N1	280 aa		10.59	□□□□□ -0.71
CSMD1-218	ENST00000635120	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	10.59	□□□□□ -0.71
CSMD1-218	ENST00000635120	ZFP91	Q96JP5	570 aa	Predicted RBP	10.59	□□□□□ -0.71
CSMD1-218	ENST00000635120	RTEL1-TNFRSF6B	F6WH68	1400 aa		10.59	□□□□□ -0.71
CSMD1-218	ENST00000635120	MX1	P20591	662 aa		10.59	□□□□□ -0.71
CSMD1-218	ENST00000635120	NF2	P35240	595 aa		10.59	□□□□□ -0.71
CSMD1-218	ENST00000635120	BCCIP	Q9P287	314 aa	Known RBP eCLIP	10.59	□□□□□ -0.71
CSMD1-218	ENST00000635120	TICAM2	Q86XR7	235 aa		10.59	□□□□□ -0.71
CSMD1-218	ENST00000635120	TSG101	Q99816	390 aa		10.59	□□□□□ -0.71
CSMD1-218	ENST00000635120	PDIA4	P13667	645 aa	Known RBP	10.59	□□□□□ -0.71
CSMD1-218	ENST00000635120	TNNT1	P13805	278 aa		10.59	□□□□□ -0.71
CSMD1-218	ENST00000635120	MIS18A	Q9NYP9	233 aa		10.59	□□□□□ -0.71
CSMD1-218	ENST00000635120	UBE4A	Q14139	1066 aa		10.58	□□□□□ -0.71
CSMD1-218	ENST00000635120	ANO10	Q9NW15	660 aa		10.58	□□□□□ -0.72
CSMD1-218	ENST00000635120	CEP63	Q96MT8	703 aa		10.58	□□□□□ -0.72
CSMD1-218	ENST00000635120	CACNA2D4	Q7Z3S7	1137 aa		10.58	□□□□□ -0.72
CSMD1-218	ENST00000635120	SCAND2P	Q9GZW5	306 aa	Predicted RBP	10.58	□□□□□ -0.72
CSMD1-218	ENST00000635120	SH2B1	Q9NRF2	756 aa	Predicted RBP	10.58	□□□□□ -0.72
CSMD1-218	ENST00000635120	KIF4B	Q2VIQ3	1234 aa		10.58	□□□□□ -0.72
CSMD1-218	ENST00000635120	CKAP2L	Q8IYA6	745 aa		10.58	□□□□□ -0.72
CSMD1-218	ENST00000635120	IGHMBP2	P38935	993 aa	Known RBP	10.58	□□□□□ -0.72
CSMD1-218	ENST00000635120	C8orf76	Q96K31	380 aa		10.58	□□□□□ -0.72
CSMD1-218	ENST00000635120	TRMT1	Q9NXH9	659 aa	Known RBP	10.58	□□□□□ -0.72
CSMD1-218	ENST00000635120	HOOK3	Q86VS8	718 aa		10.58	□□□□□ -0.72
CSMD1-218	ENST00000635120	GOLGA8B	A8MQT2	603 aa		10.57	□□□□□ -0.72
CSMD1-218	ENST00000635120	METTL24	Q5JXM2	366 aa		10.57	□□□□□ -0.72
CSMD1-218	ENST00000635120	ARAP1	Q96P48	1450 aa		10.57	□□□□□ -0.72
CSMD1-218	ENST00000635120	TNIP1	Q15025	636 aa		10.57	□□□□□ -0.72
CSMD1-218	ENST00000635120	KIF14	Q15058	1648 aa		10.57	□□□□□ -0.72
CSMD1-218	ENST00000635120	URI1	O94763	535 aa	Predicted RBP	10.57	□□□□□ -0.72
CSMD1-218	ENST00000635120	STX1A	Q16623	288 aa		10.57	□□□□□ -0.72
CSMD1-218	ENST00000635120	CTR9	Q6PD62	1173 aa		10.57	□□□□□ -0.72
CSMD1-218	ENST00000635120	AQR	O60306	1485 aa	Known RBP eCLIP	10.57	□□□□□ -0.72	3e-7	■■■■■ 34.7
CSMD1-218	ENST00000635120	ABCF2	Q9UG63	623 aa		10.57	□□□□□ -0.72
CSMD1-218	ENST00000635120	PROSER2	Q86WR7	435 aa	Predicted RBP	10.57	□□□□□ -0.72
CSMD1-218	ENST00000635120	PHAX	Q9H814	394 aa	Known RBP	10.57	□□□□□ -0.72
CSMD1-218	ENST00000635120	FGFR1OP	O95684	399 aa	Known RBP	10.56	□□□□□ -0.72
CSMD1-218	ENST00000635120	MINDY4B	A8MYZ0	360 aa		10.56	□□□□□ -0.72
CSMD1-218	ENST00000635120	PCF11	O94913	1555 aa	Known RBP	10.56	□□□□□ -0.72
CSMD1-218	ENST00000635120	ALS2CR12	Q96Q35	445 aa		10.56	□□□□□ -0.72
CSMD1-218	ENST00000635120	OSCAR	Q8IYS5	282 aa		10.56	□□□□□ -0.72
CSMD1-218	ENST00000635120	STAMBP	O95630	424 aa		10.56	□□□□□ -0.72
CSMD1-218	ENST00000635120	CCDC175	P0C221	793 aa		10.56	□□□□□ -0.72
CSMD1-218	ENST00000635120	BICDL1	Q6ZP65	573 aa		10.56	□□□□□ -0.72
CSMD1-218	ENST00000635120	KIF1BP	Q96EK5	621 aa		10.56	□□□□□ -0.72
CSMD1-218	ENST00000635120	SMC1A	Q14683	1233 aa	Known RBP	10.55	□□□□□ -0.72
CSMD1-218	ENST00000635120	GCOM1	H8Y6P7	765 aa	Predicted RBP	10.55	□□□□□ -0.72

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