RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 NEUROD2Q15784 382 aa25.15■■□□□ 1.62
SQSTM1-216ENST00000626660 NFATC2IPQ8NCF5 419 aa25.15■■□□□ 1.62
SQSTM1-216ENST00000626660 RRP7AQ9Y3A4 280 aaKnown RBP25.15■■□□□ 1.62
SQSTM1-216ENST00000626660 APAF1O14727 1248 aa25.14■■□□□ 1.62
SQSTM1-216ENST00000626660 MCM10Q7L590 875 aa25.14■■□□□ 1.62
SQSTM1-216ENST00000626660 SMARCC1Q92922 1105 aaPredicted RBP25.14■■□□□ 1.62
SQSTM1-216ENST00000626660 CEMIPQ8WUJ3 1361 aa25.14■■□□□ 1.61
SQSTM1-216ENST00000626660 DCTN1Q14203 1278 aa25.12■■□□□ 1.61
SQSTM1-216ENST00000626660 CAMKK2Q96RR4 588 aa25.11■■□□□ 1.61
SQSTM1-216ENST00000626660 PALLDQ8WX93 1383 aa25.1■■□□□ 1.61
SQSTM1-216ENST00000626660 EZH2Q15910 746 aaKnown RBP25.1■■□□□ 1.61
SQSTM1-216ENST00000626660 SIPA1L3O60292 1781 aaPredicted RBP25.1■■□□□ 1.61
SQSTM1-216ENST00000626660 ASAP1Q9ULH1 1129 aa25.09■■□□□ 1.61
SQSTM1-216ENST00000626660 LY75O60449 1722 aa25.08■■□□□ 1.61
SQSTM1-216ENST00000626660 TXNRD1Q16881 649 aa25.07■■□□□ 1.6
SQSTM1-216ENST00000626660 ATG3Q9NT62 314 aa25.07■■□□□ 1.6
SQSTM1-216ENST00000626660 THUMPD2Q9BTF0 503 aaKnown RBP25.06■■□□□ 1.6
SQSTM1-216ENST00000626660 RREB1Q92766 1687 aa25.06■■□□□ 1.6
SQSTM1-216ENST00000626660 SLC27A3Q5K4L6 730 aa25.05■■□□□ 1.6
SQSTM1-216ENST00000626660 TRIM35Q9UPQ4 493 aa25.05■■□□□ 1.6
SQSTM1-216ENST00000626660 TAF7Q15545 349 aaPredicted RBP25.04■■□□□ 1.6
SQSTM1-216ENST00000626660 TTC5Q8N0Z6 440 aa25.04■■□□□ 1.6
SQSTM1-216ENST00000626660 PAPPAQ13219 1627 aa25.04■■□□□ 1.6
SQSTM1-216ENST00000626660 BTBD11A6QL63 1104 aa25.03■■□□□ 1.6
SQSTM1-216ENST00000626660 CCNL1Q9UK58 526 aaPredicted RBP25.03■■□□□ 1.6
SQSTM1-216ENST00000626660 HMGB2P26583 209 aaKnown RBP25.02■■□□□ 1.6
SQSTM1-216ENST00000626660 SLC39A6Q13433 755 aa25.02■■□□□ 1.6
SQSTM1-216ENST00000626660 PROM2Q8N271 834 aa25.02■■□□□ 1.6
SQSTM1-216ENST00000626660 RBM42Q9BTD8 480 aaKnown RBP25.02■■□□□ 1.6
SQSTM1-216ENST00000626660 NUP188Q5SRE5 1749 aa25.01■■□□□ 1.59
SQSTM1-216ENST00000626660 SENP3-EIF4A1A0A087X0R7 540 aa25.01■■□□□ 1.59
SQSTM1-216ENST00000626660 LOC102724428A0A0B4J2F2 783 aa25.01■■□□□ 1.59
SQSTM1-216ENST00000626660 PSDA5PKW4 1024 aaPredicted RBP25.01■■□□□ 1.59
SQSTM1-216ENST00000626660 SIK1P57059 783 aa25.01■■□□□ 1.59
SQSTM1-216ENST00000626660 CALD1Q05682 793 aaKnown RBP25.01■■□□□ 1.59
SQSTM1-216ENST00000626660 NCBP3Q53F19 620 aaKnown RBP25.01■■□□□ 1.59
SQSTM1-216ENST00000626660 NGEFQ8N5V2 710 aa25.01■■□□□ 1.59
SQSTM1-216ENST00000626660 PTCD1O75127 700 aaKnown RBP25■■□□□ 1.59
SQSTM1-216ENST00000626660 CCDC27Q2M243 656 aa25■■□□□ 1.59
SQSTM1-216ENST00000626660 ZNF790Q6PG37 636 aa25■■□□□ 1.59
SQSTM1-216ENST00000626660 UBR2Q8IWV8 1755 aa24.98■■□□□ 1.59
SQSTM1-216ENST00000626660 SALL2Q9Y467 1007 aaPredicted RBP24.98■■□□□ 1.59
SQSTM1-216ENST00000626660 ATP6V1AP38606 617 aa24.97■■□□□ 1.59
SQSTM1-216ENST00000626660 NBPF14Q5TI25 921 aa24.97■■□□□ 1.59
SQSTM1-216ENST00000626660 LRRC4BQ9NT99 713 aa24.97■■□□□ 1.59
SQSTM1-216ENST00000626660 ZNF831Q5JPB2 1677 aa24.97■■□□□ 1.59
SQSTM1-216ENST00000626660 KCNQ4P56696 695 aa24.96■■□□□ 1.59
SQSTM1-216ENST00000626660 BABAM1Q9NWV8 329 aa24.96■■□□□ 1.59
SQSTM1-216ENST00000626660 KCPQ6ZWJ8 1503 aa24.96■■□□□ 1.59
SQSTM1-216ENST00000626660 TAF1LQ8IZX4 1826 aa24.96■■□□□ 1.59
SQSTM1-216ENST00000626660 KDM3BQ7LBC6 1761 aa24.95■■□□□ 1.59
SQSTM1-216ENST00000626660 C5P01031 1676 aa24.95■■□□□ 1.58
SQSTM1-216ENST00000626660 WWC1Q8IX03 1113 aa24.95■■□□□ 1.58
SQSTM1-216ENST00000626660 MIS18AQ9NYP9 233 aa24.95■■□□□ 1.58
SQSTM1-216ENST00000626660 TSPYL4Q9UJ04 414 aa24.95■■□□□ 1.58
SQSTM1-216ENST00000626660 LAS1LQ9Y4W2 734 aaKnown RBP24.95■■□□□ 1.58
SQSTM1-216ENST00000626660 FMNL2Q96PY5 1086 aa24.94■■□□□ 1.58
SQSTM1-216ENST00000626660 LRP5O75197 1615 aa24.94■■□□□ 1.58
SQSTM1-216ENST00000626660 ZNF496Q96IT1 587 aaPredicted RBP24.93■■□□□ 1.58
SQSTM1-216ENST00000626660 KCNQ3O43525 872 aa24.92■■□□□ 1.58
SQSTM1-216ENST00000626660 VSIG10Q8N0Z9 540 aa24.92■■□□□ 1.58
SQSTM1-216ENST00000626660 STK32BQ9NY57 414 aa24.92■■□□□ 1.58
SQSTM1-216ENST00000626660 GNAI1P63096 354 aa24.91■■□□□ 1.58
SQSTM1-216ENST00000626660 ITPK1Q13572 414 aa24.91■■□□□ 1.58
SQSTM1-216ENST00000626660 CFAP44Q96MT7 982 aa24.91■■□□□ 1.58
SQSTM1-216ENST00000626660 SLC4A9Q96Q91 983 aa24.91■■□□□ 1.58
SQSTM1-216ENST00000626660 IFT57Q9NWB7 429 aa24.91■■□□□ 1.58
SQSTM1-216ENST00000626660 HEG1Q9ULI3 1381 aa24.91■■□□□ 1.58
SQSTM1-216ENST00000626660 CICQ96RK0 1608 aaPredicted RBP24.9■■□□□ 1.58
SQSTM1-216ENST00000626660 CHL1O00533 1208 aa24.9■■□□□ 1.58
SQSTM1-216ENST00000626660 TJP1Q07157 1748 aa24.89■■□□□ 1.58
SQSTM1-216ENST00000626660 WDR63Q8IWG1 891 aa24.89■■□□□ 1.58
SQSTM1-216ENST00000626660 IL16Q14005 1332 aa24.88■■□□□ 1.57
SQSTM1-216ENST00000626660 LINC00116Q8NCU8 138 aa24.88■■□□□ 1.57
SQSTM1-216ENST00000626660 TEX13AQ9BXU3 409 aaPredicted RBP24.88■■□□□ 1.57
SQSTM1-216ENST00000626660 ANO8Q9HCE9 1232 aaPredicted RBP24.88■■□□□ 1.57
SQSTM1-216ENST00000626660 C4BP0C0L5 1744 aa24.88■■□□□ 1.57
SQSTM1-216ENST00000626660 COL5A3P25940 1745 aaPredicted RBP24.88■■□□□ 1.57
SQSTM1-216ENST00000626660 R3HDM1Q15032 1099 aaKnown RBP24.87■■□□□ 1.57
SQSTM1-216ENST00000626660 DNAJC10Q8IXB1 793 aa24.87■■□□□ 1.57
SQSTM1-216ENST00000626660 SNRPA1P09661 255 aaKnown RBP24.86■■□□□ 1.57
SQSTM1-216ENST00000626660 ZNF853P0CG23 659 aa24.86■■□□□ 1.57
SQSTM1-216ENST00000626660 EIF4A1P60842 406 aaKnown RBP24.86■■□□□ 1.57
SQSTM1-216ENST00000626660 SLC15A2Q16348 729 aa24.86■■□□□ 1.57
SQSTM1-216ENST00000626660 AK7Q96M32 723 aa24.86■■□□□ 1.57
SQSTM1-216ENST00000626660 AKT1S1Q96B36 256 aa24.85■■□□□ 1.57
SQSTM1-216ENST00000626660 STARD3NLO95772 234 aa24.84■■□□□ 1.57
SQSTM1-216ENST00000626660 ZNF827Q17R98 1081 aa24.84■■□□□ 1.57
SQSTM1-216ENST00000626660 MBIPQ9NS73 344 aa24.84■■□□□ 1.57
SQSTM1-216ENST00000626660 TFCP2L1Q9NZI6 479 aa24.84■■□□□ 1.57
SQSTM1-216ENST00000626660 RC3H1Q5TC82 1133 aaKnown RBP24.83■■□□□ 1.57
SQSTM1-216ENST00000626660 CNTNAP4Q9C0A0 1308 aa24.83■■□□□ 1.56
SQSTM1-216ENST00000626660 CRKLP46109 303 aaKnown RBP24.82■■□□□ 1.56
SQSTM1-216ENST00000626660 HNRNPUQ00839 825 aaKnown RBP eCLIP24.82■■□□□ 1.56
SQSTM1-216ENST00000626660 CYP19A1P11511 503 aaPredicted RBP24.81■■□□□ 1.56
SQSTM1-216ENST00000626660 MYH14Q7Z406 1995 aaKnown RBP24.81■■□□□ 1.56
SQSTM1-216ENST00000626660 ZNF521Q96K83 1311 aa24.81■■□□□ 1.56
SQSTM1-216ENST00000626660 LAMB4A4D0S4 1761 aa24.8■■□□□ 1.56
SQSTM1-216ENST00000626660 GNPATO15228 680 aa24.8■■□□□ 1.56
SQSTM1-216ENST00000626660 GIGYF1O75420 1035 aaPredicted RBP24.8■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms