RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 RGPD5Q99666 1765 aa26.64■■□□□ 1.85
LIME1-210ENST00000621325 FKBP5Q13451 457 aaPredicted RBP26.64■■□□□ 1.85
LIME1-210ENST00000621325 NCOA3Q9Y6Q9 1424 aa26.64■■□□□ 1.85
LIME1-210ENST00000621325 ERBB3P21860 1342 aa26.63■■□□□ 1.85
LIME1-210ENST00000621325 DCTPP1Q9H773 170 aa26.63■■□□□ 1.85
LIME1-210ENST00000621325 AMOTQ4VCS5 1084 aa26.63■■□□□ 1.85
LIME1-210ENST00000621325 TBC1D32Q96NH3 1257 aa26.63■■□□□ 1.85
LIME1-210ENST00000621325 UPF2Q9HAU5 1272 aaKnown RBP26.62■■□□□ 1.85
LIME1-210ENST00000621325 DAXXQ9UER7 740 aaPredicted RBP26.62■■□□□ 1.85
LIME1-210ENST00000621325 CCT4P50991 539 aaKnown RBP26.61■■□□□ 1.85
LIME1-210ENST00000621325 EIF4A1P60842 406 aaKnown RBP26.61■■□□□ 1.85
LIME1-210ENST00000621325 HDGFL1Q5TGJ6 251 aa26.61■■□□□ 1.85
LIME1-210ENST00000621325 RPAP2Q8IXW5 612 aaPredicted RBP26.61■■□□□ 1.85
LIME1-210ENST00000621325 LMO7Q8WWI1 1683 aa26.61■■□□□ 1.85
LIME1-210ENST00000621325 TEFQ10587 303 aa26.6■■□□□ 1.85
LIME1-210ENST00000621325 SOS1Q07889 1333 aaPredicted RBP26.6■■□□□ 1.85
LIME1-210ENST00000621325 C1orf141Q5JVX7 400 aa26.6■■□□□ 1.85
LIME1-210ENST00000621325 NPHP3Q7Z494 1330 aa26.6■■□□□ 1.85
LIME1-210ENST00000621325 RNMTO43148 476 aaKnown RBP26.59■■□□□ 1.85
LIME1-210ENST00000621325 EIF2S2P20042 333 aaKnown RBP26.59■■□□□ 1.85
LIME1-210ENST00000621325 MFAP1P55081 439 aaKnown RBP26.59■■□□□ 1.85
LIME1-210ENST00000621325 BTBD11A6QL63 1104 aa26.58■■□□□ 1.85
LIME1-210ENST00000621325 PHAXQ9H814 394 aaKnown RBP26.58■■□□□ 1.85
LIME1-210ENST00000621325 CAMTA1Q9Y6Y1 1673 aa26.58■■□□□ 1.85
LIME1-210ENST00000621325 KDM4FA0A1W2PPD8 638 aa26.58■■□□□ 1.85
LIME1-210ENST00000621325 BMP2KLQ5H9B9 411 aa26.57■■□□□ 1.84
LIME1-210ENST00000621325 NLRP2Q9NX02 1062 aa26.56■■□□□ 1.84
LIME1-210ENST00000621325 CHRNA2Q15822 529 aa26.56■■□□□ 1.84
LIME1-210ENST00000621325 KDM3BQ7LBC6 1761 aa26.55■■□□□ 1.84
LIME1-210ENST00000621325 TNS3Q68CZ2 1445 aa26.55■■□□□ 1.84
LIME1-210ENST00000621325 C16orf71Q8IYS4 520 aaPredicted RBP26.55■■□□□ 1.84
LIME1-210ENST00000621325 LMTK3Q96Q04 1460 aa26.54■■□□□ 1.84
LIME1-210ENST00000621325 APBB1O00213 710 aa26.54■■□□□ 1.84
LIME1-210ENST00000621325 XIRP1Q702N8 1843 aaKnown RBP26.54■■□□□ 1.84
LIME1-210ENST00000621325 SPATA31A3Q5VYP0 1347 aa26.53■■□□□ 1.84
LIME1-210ENST00000621325 CHPF2Q9P2E5 772 aa26.53■■□□□ 1.84
LIME1-210ENST00000621325 SMARCA5O60264 1052 aaPredicted RBP26.52■■□□□ 1.84
LIME1-210ENST00000621325 BRINP3Q76B58 766 aa26.52■■□□□ 1.84
LIME1-210ENST00000621325 PLEKHM2Q8IWE5 1019 aa26.52■■□□□ 1.84
LIME1-210ENST00000621325 CACNA1FO60840 1977 aa26.52■■□□□ 1.84
LIME1-210ENST00000621325 OTUD7AQ8TE49 926 aaPredicted RBP26.51■■□□□ 1.84
LIME1-210ENST00000621325 C22orf23Q9BZE7 217 aa26.51■■□□□ 1.84
LIME1-210ENST00000621325 ANXA1P04083 346 aa26.51■■□□□ 1.83
LIME1-210ENST00000621325 GNAI2P04899 355 aa26.5■■□□□ 1.83
LIME1-210ENST00000621325 STRCQ7RTU9 1775 aa26.5■■□□□ 1.83
LIME1-210ENST00000621325 RAPGEF4Q8WZA2 1011 aa26.5■■□□□ 1.83
LIME1-210ENST00000621325 ZNF335Q9H4Z2 1342 aaPredicted RBP26.5■■□□□ 1.83
LIME1-210ENST00000621325 COL18A1P39060 1754 aa26.49■■□□□ 1.83
LIME1-210ENST00000621325 HOXB7P09629 217 aa26.49■■□□□ 1.83
LIME1-210ENST00000621325 CSB-PGBD3P0DP91 1061 aa26.49■■□□□ 1.83
LIME1-210ENST00000621325 RTL5Q5HYW3 569 aaPredicted RBP26.49■■□□□ 1.83
LIME1-210ENST00000621325 GSPT1P15170 499 aaKnown RBP26.48■■□□□ 1.83
LIME1-210ENST00000621325 OVOS2A0A0G2JMS6 1433 aa26.47■■□□□ 1.83
LIME1-210ENST00000621325 PRAMEF22A3QJZ6 481 aa26.47■■□□□ 1.83
LIME1-210ENST00000621325 USP44Q9H0E7 712 aa26.47■■□□□ 1.83
LIME1-210ENST00000621325 MEGF6O75095 1541 aa26.46■■□□□ 1.83
LIME1-210ENST00000621325 HMMRO75330 724 aa26.46■■□□□ 1.83
LIME1-210ENST00000621325 GNAI3P08754 354 aa26.46■■□□□ 1.83
LIME1-210ENST00000621325 PNMA6EA0A0J9YXQ4 647 aa26.45■■□□□ 1.82
LIME1-210ENST00000621325 GIGYF1O75420 1035 aaPredicted RBP26.45■■□□□ 1.82
LIME1-210ENST00000621325 TBC1D9Q6ZT07 1266 aa26.45■■□□□ 1.82
LIME1-210ENST00000621325 TATP17735 454 aaPredicted RBP26.44■■□□□ 1.82
LIME1-210ENST00000621325 LRRFIP2Q9Y608 721 aaKnown RBP26.44■■□□□ 1.82
LIME1-210ENST00000621325 PXDNLA1KZ92 1463 aa26.44■■□□□ 1.82
LIME1-210ENST00000621325 BECN1Q14457 450 aa26.44■■□□□ 1.82
LIME1-210ENST00000621325 CRYBG1Q9Y4K1 1723 aa26.43■■□□□ 1.82
LIME1-210ENST00000621325 EXOC6BQ9Y2D4 811 aa26.43■■□□□ 1.82
LIME1-210ENST00000621325 PI4KAP2A4QPH2 592 aa26.43■■□□□ 1.82
LIME1-210ENST00000621325 PI4KAP1Q8N8J0 262 aa26.43■■□□□ 1.82
LIME1-210ENST00000621325 TBC1D2Q9BYX2 928 aa26.43■■□□□ 1.82
LIME1-210ENST00000621325 PROSER3Q2NL68 480 aa26.42■■□□□ 1.82
LIME1-210ENST00000621325 SLAIN2Q9P270 581 aa26.42■■□□□ 1.82
LIME1-210ENST00000621325 HEG1Q9ULI3 1381 aa26.42■■□□□ 1.82
LIME1-210ENST00000621325 KDM6AO15550 1401 aaPredicted RBP26.42■■□□□ 1.82
LIME1-210ENST00000621325 PHKG2P15735 406 aa26.41■■□□□ 1.82
LIME1-210ENST00000621325 TTC22Q5TAA0 569 aa26.41■■□□□ 1.82
LIME1-210ENST00000621325 ATP8B2P98198 1209 aa26.4■■□□□ 1.82
LIME1-210ENST00000621325 SLC39A6Q13433 755 aa26.4■■□□□ 1.82
LIME1-210ENST00000621325 SIPA1L3O60292 1781 aaPredicted RBP26.4■■□□□ 1.82
LIME1-210ENST00000621325 ADAMTS7Q9UKP4 1686 aa26.4■■□□□ 1.82
LIME1-210ENST00000621325 SRCIN1Q9C0H9 1055 aa26.4■■□□□ 1.82
LIME1-210ENST00000621325 N4BP2Q86UW6 1770 aaPredicted RBP26.4■■□□□ 1.82
LIME1-210ENST00000621325 UBTFL1P0CB47 393 aaPredicted RBP26.39■■□□□ 1.82
LIME1-210ENST00000621325 DNAAF4Q8WXU2 420 aa26.39■■□□□ 1.82
LIME1-210ENST00000621325 DBF4Q9UBU7 674 aaPredicted RBP26.39■■□□□ 1.82
LIME1-210ENST00000621325 SPG7Q9UQ90 795 aa26.39■■□□□ 1.82
LIME1-210ENST00000621325 CPDO75976 1380 aa26.39■■□□□ 1.82
LIME1-210ENST00000621325 ADCY9O60503 1353 aa26.38■■□□□ 1.81
LIME1-210ENST00000621325 BEND3Q5T5X7 828 aa26.38■■□□□ 1.81
LIME1-210ENST00000621325 CDC45O75419 566 aa26.37■■□□□ 1.81
LIME1-210ENST00000621325 NFATC2IPQ8NCF5 419 aa26.37■■□□□ 1.81
LIME1-210ENST00000621325 CHMP4AQ9BY43 222 aa26.37■■□□□ 1.81
LIME1-210ENST00000621325 SLC52A2Q9HAB3 445 aa26.37■■□□□ 1.81
LIME1-210ENST00000621325 CYP27B1O15528 508 aa26.36■■□□□ 1.81
LIME1-210ENST00000621325 RBM25P49756 843 aaKnown RBP26.36■■□□□ 1.81
LIME1-210ENST00000621325 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.36■■□□□ 1.81
LIME1-210ENST00000621325 NBPF7P0C2Y1 421 aaPredicted RBP26.36■■□□□ 1.81
LIME1-210ENST00000621325 SOS2Q07890 1332 aaPredicted RBP26.35■■□□□ 1.81
LIME1-210ENST00000621325 ZNF790Q6PG37 636 aa26.35■■□□□ 1.81
LIME1-210ENST00000621325 IFNL2Q8IZJ0 200 aa26.35■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms