RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 EMILIN1Q9Y6C2 1016 aa10.87□□□□□ -0.67
CLK1-215ENST00000621181 TOGARAM1Q9Y4F4 1720 aa10.87□□□□□ -0.67
CLK1-215ENST00000621181 UBR3Q6ZT12 1888 aa10.86□□□□□ -0.67
CLK1-215ENST00000621181 ADCY9O60503 1353 aa10.86□□□□□ -0.67
CLK1-215ENST00000621181 SSFA2P28290 1259 aa10.86□□□□□ -0.67
CLK1-215ENST00000621181 HSPA6P17066 643 aa10.86□□□□□ -0.67
CLK1-215ENST00000621181 TMOD3Q9NYL9 352 aa10.86□□□□□ -0.67
CLK1-215ENST00000621181 PKD1L3Q7Z443 1732 aa10.85□□□□□ -0.67
CLK1-215ENST00000621181 GNPATO15228 680 aa10.85□□□□□ -0.67
CLK1-215ENST00000621181 NKX1-1Q15270 411 aaPredicted RBP10.85□□□□□ -0.67
CLK1-215ENST00000621181 LINC00116Q8NCU8 138 aa10.85□□□□□ -0.67
CLK1-215ENST00000621181 ATP6V1AP38606 617 aa10.84□□□□□ -0.67
CLK1-215ENST00000621181 ASAP1Q9ULH1 1129 aa10.84□□□□□ -0.67
CLK1-215ENST00000621181 CARD14Q9BXL6 1004 aa10.84□□□□□ -0.67
CLK1-215ENST00000621181 MMP10P09238 476 aa10.83□□□□□ -0.68
CLK1-215ENST00000621181 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.83□□□□□ -0.685e-10■■□□□ 13.8
CLK1-215ENST00000621181 NCAPD2Q15021 1401 aa10.83□□□□□ -0.68
CLK1-215ENST00000621181 MAP2P11137 1827 aaKnown RBP10.83□□□□□ -0.68
CLK1-215ENST00000621181 WASHC2AQ641Q2 1341 aa10.82□□□□□ -0.68
CLK1-215ENST00000621181 ITPK1Q13572 414 aa10.82□□□□□ -0.68
CLK1-215ENST00000621181 IFNL2Q8IZJ0 200 aa10.82□□□□□ -0.68
CLK1-215ENST00000621181 EYA1Q99502 592 aa10.82□□□□□ -0.68
CLK1-215ENST00000621181 ABCB7O75027 752 aa10.81□□□□□ -0.68
CLK1-215ENST00000621181 PHKG2P15735 406 aa10.81□□□□□ -0.68
CLK1-215ENST00000621181 RTCBQ9Y3I0 505 aaKnown RBP10.81□□□□□ -0.68
CLK1-215ENST00000621181 ANKRD26Q9UPS8 1709 aa10.8□□□□□ -0.68
CLK1-215ENST00000621181 TRAPPC3LQ5T215 181 aa10.8□□□□□ -0.68
CLK1-215ENST00000621181 ATG3Q9NT62 314 aa10.8□□□□□ -0.68
CLK1-215ENST00000621181 BCS1LQ9Y276 419 aa10.8□□□□□ -0.68
CLK1-215ENST00000621181 KIF3CO14782 793 aa10.79□□□□□ -0.68
CLK1-215ENST00000621181 TNNT2P45379 298 aaPredicted RBP10.79□□□□□ -0.68
CLK1-215ENST00000621181 RBM42Q9BTD8 480 aaKnown RBP10.79□□□□□ -0.68
CLK1-215ENST00000621181 PXDNLA1KZ92 1463 aa10.79□□□□□ -0.68
CLK1-215ENST00000621181 TGFB2P61812 414 aa10.79□□□□□ -0.68
CLK1-215ENST00000621181 NLGN1Q8N2Q7 840 aa10.79□□□□□ -0.68
CLK1-215ENST00000621181 ZNF219Q9P2Y4 722 aaPredicted RBP10.79□□□□□ -0.68
CLK1-215ENST00000621181 POLKQ9UBT6 870 aa10.79□□□□□ -0.68
CLK1-215ENST00000621181 CICQ96RK0 1608 aaPredicted RBP10.78□□□□□ -0.68
CLK1-215ENST00000621181 A0A0G2JLW4 131 aa10.78□□□□□ -0.68
CLK1-215ENST00000621181 DSG3P32926 999 aa10.78□□□□□ -0.68
CLK1-215ENST00000621181 POLR3GLQ9BT43 218 aa10.78□□□□□ -0.68
CLK1-215ENST00000621181 N4BP2Q86UW6 1770 aaPredicted RBP10.77□□□□□ -0.68
CLK1-215ENST00000621181 RFC4P35249 363 aa10.77□□□□□ -0.68
CLK1-215ENST00000621181 EIF4A2Q14240 407 aaKnown RBP10.77□□□□□ -0.68
CLK1-215ENST00000621181 KIF13BQ9NQT8 1826 aa10.77□□□□□ -0.69
CLK1-215ENST00000621181 KDRP35968 1356 aa10.77□□□□□ -0.69
CLK1-215ENST00000621181 ERVV-2B6SEH9 535 aa10.77□□□□□ -0.69
CLK1-215ENST00000621181 TOMM70O94826 608 aa10.77□□□□□ -0.69
CLK1-215ENST00000621181 HSP90AB1P08238 724 aaKnown RBP10.77□□□□□ -0.69
CLK1-215ENST00000621181 APLP1P51693 650 aa10.77□□□□□ -0.69
CLK1-215ENST00000621181 ARHGAP27Q6ZUM4 889 aa10.77□□□□□ -0.69
CLK1-215ENST00000621181 ARHGEF1Q92888 912 aaKnown RBP10.77□□□□□ -0.69
CLK1-215ENST00000621181 DCAF5Q96JK2 942 aa10.77□□□□□ -0.69
CLK1-215ENST00000621181 CCDC87Q9NVE4 849 aa10.77□□□□□ -0.69
CLK1-215ENST00000621181 PARP3Q9Y6F1 533 aa10.77□□□□□ -0.69
CLK1-215ENST00000621181 FCHSD2O94868 740 aa10.76□□□□□ -0.69
CLK1-215ENST00000621181 ATXN8OSP0DMR3 200 aa10.76□□□□□ -0.69
CLK1-215ENST00000621181 SLC4A9Q96Q91 983 aa10.76□□□□□ -0.69
CLK1-215ENST00000621181 C10orf71Q711Q0 1435 aa10.76□□□□□ -0.69
CLK1-215ENST00000621181 CNTNAP4Q9C0A0 1308 aa10.76□□□□□ -0.69
CLK1-215ENST00000621181 PLEKHG2Q9H7P9 1386 aa10.75□□□□□ -0.69
CLK1-215ENST00000621181 GYS1P13807 737 aa10.75□□□□□ -0.69
CLK1-215ENST00000621181 DPEP1P16444 411 aa10.75□□□□□ -0.69
CLK1-215ENST00000621181 RC3H1Q5TC82 1133 aaKnown RBP10.75□□□□□ -0.69
CLK1-215ENST00000621181 RPS6KA4O75676 772 aa10.74□□□□□ -0.69
CLK1-215ENST00000621181 CABP4P57796 275 aa10.74□□□□□ -0.69
CLK1-215ENST00000621181 PLEKHO1Q53GL0 409 aaPredicted RBP10.74□□□□□ -0.69
CLK1-215ENST00000621181 ZNF530Q6P9A1 599 aaPredicted RBP10.74□□□□□ -0.69
CLK1-215ENST00000621181 KIAA1551Q9HCM1 1747 aa10.74□□□□□ -0.69
CLK1-215ENST00000621181 PTCD1O75127 700 aaKnown RBP10.74□□□□□ -0.69
CLK1-215ENST00000621181 C16orf71Q8IYS4 520 aaPredicted RBP10.74□□□□□ -0.69
CLK1-215ENST00000621181 NMRK2Q9NPI5 230 aa10.74□□□□□ -0.69
CLK1-215ENST00000621181 PCNTO95613 3336 aa10.74□□□□□ -0.69
CLK1-215ENST00000621181 ZNF831Q5JPB2 1677 aa10.74□□□□□ -0.69
CLK1-215ENST00000621181 C4AP0C0L4 1744 aa10.74□□□□□ -0.69
CLK1-215ENST00000621181 MTHFSP49914 203 aa10.73□□□□□ -0.69
CLK1-215ENST00000621181 AMOTQ4VCS5 1084 aa10.73□□□□□ -0.69
CLK1-215ENST00000621181 C1orf141Q5JVX7 400 aa10.73□□□□□ -0.69
CLK1-215ENST00000621181 CCER1Q8TC90 406 aaPredicted RBP10.73□□□□□ -0.69
CLK1-215ENST00000621181 COL5A3P25940 1745 aaPredicted RBP10.73□□□□□ -0.69
CLK1-215ENST00000621181 MYH14Q7Z406 1995 aaKnown RBP10.73□□□□□ -0.69
CLK1-215ENST00000621181 C9orf131Q5VYM1 1079 aa10.72□□□□□ -0.69
CLK1-215ENST00000621181 PIM2Q9P1W9 311 aa10.72□□□□□ -0.69
CLK1-215ENST00000621181 KDM6AO15550 1401 aaPredicted RBP10.72□□□□□ -0.69
CLK1-215ENST00000621181 BRCA1P38398 1863 aaKnown RBP10.72□□□□□ -0.69
CLK1-215ENST00000621181 CRKLP46109 303 aaKnown RBP10.72□□□□□ -0.69
CLK1-215ENST00000621181 KCNA3P22001 575 aa10.71□□□□□ -0.69
CLK1-215ENST00000621181 NFATC2IPQ8NCF5 419 aa10.71□□□□□ -0.69
CLK1-215ENST00000621181 POLA2Q14181 598 aa10.7□□□□□ -0.7
CLK1-215ENST00000621181 DALRD3Q5D0E6 543 aaKnown RBP10.7□□□□□ -0.7
CLK1-215ENST00000621181 DNAJC5GQ8N7S2 189 aa10.7□□□□□ -0.7
CLK1-215ENST00000621181 SRP68Q9UHB9 627 aaKnown RBP10.7□□□□□ -0.7
CLK1-215ENST00000621181 USP42Q9H9J4 1324 aaKnown RBP10.7□□□□□ -0.7
CLK1-215ENST00000621181 ARFGEF1Q9Y6D6 1849 aa10.7□□□□□ -0.7
CLK1-215ENST00000621181 FKBP8Q14318 412 aa10.7□□□□□ -0.7
CLK1-215ENST00000621181 AEBP1Q8IUX7 1158 aa10.7□□□□□ -0.7
CLK1-215ENST00000621181 RBM46Q8TBY0 533 aaKnown RBP10.7□□□□□ -0.7
CLK1-215ENST00000621181 RNF181Q9P0P0 153 aa10.7□□□□□ -0.7
CLK1-215ENST00000621181 TIMELESSQ9UNS1 1208 aa10.7□□□□□ -0.7
CLK1-215ENST00000621181 KDM2BQ8NHM5 1336 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms