RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 RBM42Q9BTD8 480 aaKnown RBP25.69■■□□□ 1.7
UPF1-212ENST00000601689 SLC52A2Q9HAB3 445 aa25.69■■□□□ 1.7
UPF1-212ENST00000601689 MAPK8IP3Q9UPT6 1336 aa25.68■■□□□ 1.7
UPF1-212ENST00000601689 TEFQ10587 303 aa25.68■■□□□ 1.7
UPF1-212ENST00000601689 PAPPAQ13219 1627 aa25.67■■□□□ 1.7
UPF1-212ENST00000601689 WDR43Q15061 677 aaKnown RBP eCLIP25.67■■□□□ 1.7
UPF1-212ENST00000601689 AKT1S1Q96B36 256 aa25.67■■□□□ 1.7
UPF1-212ENST00000601689 AK7Q96M32 723 aa25.67■■□□□ 1.7
UPF1-212ENST00000601689 LGR6Q9HBX8 967 aa25.67■■□□□ 1.7
UPF1-212ENST00000601689 FLAD1Q8NFF5 587 aa25.66■■□□□ 1.7
UPF1-212ENST00000601689 C5P01031 1676 aa25.66■■□□□ 1.7
UPF1-212ENST00000601689 ZNF827Q17R98 1081 aa25.65■■□□□ 1.7
UPF1-212ENST00000601689 PHACTR3Q96KR7 559 aa25.65■■□□□ 1.7
UPF1-212ENST00000601689 LRP5O75197 1615 aa25.65■■□□□ 1.7
UPF1-212ENST00000601689 TAF1LQ8IZX4 1826 aa25.65■■□□□ 1.7
UPF1-212ENST00000601689 ANP32CO43423 234 aa25.64■■□□□ 1.7
UPF1-212ENST00000601689 SLC16A10Q8TF71 515 aa25.64■■□□□ 1.7
UPF1-212ENST00000601689 PPP1R1BQ9UD71 204 aaPredicted RBP25.64■■□□□ 1.7
UPF1-212ENST00000601689 MSH5O43196 834 aa25.63■■□□□ 1.69
UPF1-212ENST00000601689 QSER1Q2KHR3 1735 aa25.63■■□□□ 1.69
UPF1-212ENST00000601689 HTATSF1O43719 755 aaKnown RBP25.62■■□□□ 1.69
UPF1-212ENST00000601689 TTC5Q8N0Z6 440 aa25.62■■□□□ 1.69
UPF1-212ENST00000601689 MTFR1LQ9H019 292 aa25.62■■□□□ 1.69
UPF1-212ENST00000601689 PTCD1O75127 700 aaKnown RBP25.61■■□□□ 1.69
UPF1-212ENST00000601689 ZBTB7AO95365 584 aa25.6■■□□□ 1.69
UPF1-212ENST00000601689 CASZ1Q86V15 1759 aa25.59■■□□□ 1.69
UPF1-212ENST00000601689 C4BP0C0L5 1744 aa25.59■■□□□ 1.69
UPF1-212ENST00000601689 MRC1P22897 1456 aa25.59■■□□□ 1.69
UPF1-212ENST00000601689 IL17REQ8NFR9 667 aa25.58■■□□□ 1.69
UPF1-212ENST00000601689 ZNF831Q5JPB2 1677 aa25.58■■□□□ 1.68
UPF1-212ENST00000601689 ADAMTS7Q9UKP4 1686 aa25.58■■□□□ 1.68
UPF1-212ENST00000601689 PNPLA7Q6ZV29 1317 aa25.57■■□□□ 1.68
UPF1-212ENST00000601689 ATF5Q9Y2D1 282 aaPredicted RBP25.56■■□□□ 1.68
UPF1-212ENST00000601689 POLD1P28340 1107 aa25.55■■□□□ 1.68
UPF1-212ENST00000601689 NFE2L2Q16236 605 aa25.55■■□□□ 1.68
UPF1-212ENST00000601689 LINC00116Q8NCU8 138 aa25.55■■□□□ 1.68
UPF1-212ENST00000601689 PLEKHF1Q96S99 279 aa25.55■■□□□ 1.68
UPF1-212ENST00000601689 PDGFDQ9GZP0 370 aaPredicted RBP25.55■■□□□ 1.68
UPF1-212ENST00000601689 BTBD11A6QL63 1104 aa25.54■■□□□ 1.68
UPF1-212ENST00000601689 SSFA2P28290 1259 aa25.54■■□□□ 1.68
UPF1-212ENST00000601689 SLC39A6Q13433 755 aa25.54■■□□□ 1.68
UPF1-212ENST00000601689 ITPK1Q13572 414 aa25.54■■□□□ 1.68
UPF1-212ENST00000601689 RTCBQ9Y3I0 505 aaKnown RBP25.54■■□□□ 1.68
UPF1-212ENST00000601689 GNPATO15228 680 aa25.53■■□□□ 1.68
UPF1-212ENST00000601689 LMOD3Q0VAK6 560 aa25.53■■□□□ 1.68
UPF1-212ENST00000601689 RC3H1Q5TC82 1133 aaKnown RBP25.53■■□□□ 1.68
UPF1-212ENST00000601689 TUBGCP6Q96RT7 1819 aa25.53■■□□□ 1.68
UPF1-212ENST00000601689 CEMIPQ8WUJ3 1361 aa25.53■■□□□ 1.68
UPF1-212ENST00000601689 VSIG10Q8N0Z9 540 aa25.52■■□□□ 1.68
UPF1-212ENST00000601689 SRCAPQ6ZRS2 3230 aa25.52■■□□□ 1.68
UPF1-212ENST00000601689 PHF14O94880 888 aa25.51■■□□□ 1.67
UPF1-212ENST00000601689 ZNF790Q6PG37 636 aa25.51■■□□□ 1.67
UPF1-212ENST00000601689 MCM10Q7L590 875 aa25.51■■□□□ 1.67
UPF1-212ENST00000601689 COL23A1Q86Y22 540 aaPredicted RBP25.51■■□□□ 1.67
UPF1-212ENST00000601689 CNTNAP4Q9C0A0 1308 aa25.51■■□□□ 1.67
UPF1-212ENST00000601689 DLG5Q8TDM6 1919 aa25.51■■□□□ 1.67
UPF1-212ENST00000601689 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.5■■□□□ 1.67
UPF1-212ENST00000601689 TRAPPC3LQ5T215 181 aa25.5■■□□□ 1.67
UPF1-212ENST00000601689 RUNDC1Q96C34 613 aa25.5■■□□□ 1.67
UPF1-212ENST00000601689 TEX13AQ9BXU3 409 aaPredicted RBP25.5■■□□□ 1.67
UPF1-212ENST00000601689 PNISRQ8TF01 805 aaKnown RBP25.49■■□□□ 1.67
UPF1-212ENST00000601689 FMNL2Q96PY5 1086 aa25.49■■□□□ 1.67
UPF1-212ENST00000601689 UBR3Q6ZT12 1888 aa25.49■■□□□ 1.67
UPF1-212ENST00000601689 ADRA2BP18089 450 aa25.48■■□□□ 1.67
UPF1-212ENST00000601689 RIPK4P57078 832 aa25.48■■□□□ 1.67
UPF1-212ENST00000601689 SLC4A9Q96Q91 983 aa25.48■■□□□ 1.67
UPF1-212ENST00000601689 SIPA1L3O60292 1781 aaPredicted RBP25.47■■□□□ 1.67
UPF1-212ENST00000601689 COL5A3P25940 1745 aaPredicted RBP25.47■■□□□ 1.67
UPF1-212ENST00000601689 STARD3NLO95772 234 aa25.47■■□□□ 1.67
UPF1-212ENST00000601689 TAF7Q15545 349 aaPredicted RBP25.47■■□□□ 1.67
UPF1-212ENST00000601689 ADAMTS8Q9UP79 889 aa25.47■■□□□ 1.67
UPF1-212ENST00000601689 RPS6KA4O75676 772 aa25.46■■□□□ 1.67
UPF1-212ENST00000601689 DCTN1Q14203 1278 aa25.46■■□□□ 1.67
UPF1-212ENST00000601689 CRKLP46109 303 aaKnown RBP25.45■■□□□ 1.66
UPF1-212ENST00000601689 NPM2Q86SE8 214 aaKnown RBP25.45■■□□□ 1.66
UPF1-212ENST00000601689 DNAJC10Q8IXB1 793 aa25.45■■□□□ 1.66
UPF1-212ENST00000601689 CCDC146Q8IYE0 955 aa25.45■■□□□ 1.66
UPF1-212ENST00000601689 DCAF8L1A6NGE4 600 aa25.44■■□□□ 1.66
UPF1-212ENST00000601689 RFC4P35249 363 aa25.44■■□□□ 1.66
UPF1-212ENST00000601689 TMPOP42166 694 aaKnown RBP25.44■■□□□ 1.66
UPF1-212ENST00000601689 ARXQ96QS3 562 aa25.44■■□□□ 1.66
UPF1-212ENST00000601689 PTGER2P43116 358 aa25.43■■□□□ 1.66
UPF1-212ENST00000601689 CICQ96RK0 1608 aaPredicted RBP25.43■■□□□ 1.66
UPF1-212ENST00000601689 UBR2Q8IWV8 1755 aa25.43■■□□□ 1.66
UPF1-212ENST00000601689 NEUROD2Q15784 382 aa25.42■■□□□ 1.66
UPF1-212ENST00000601689 ZNF496Q96IT1 587 aaPredicted RBP25.42■■□□□ 1.66
UPF1-212ENST00000601689 MRS2Q9HD23 443 aa25.42■■□□□ 1.66
UPF1-212ENST00000601689 CCDC87Q9NVE4 849 aa25.42■■□□□ 1.66
UPF1-212ENST00000601689 HEG1Q9ULI3 1381 aa25.42■■□□□ 1.66
UPF1-212ENST00000601689 KCPQ6ZWJ8 1503 aa25.42■■□□□ 1.66
UPF1-212ENST00000601689 TJP1Q07157 1748 aa25.41■■□□□ 1.66
UPF1-212ENST00000601689 MYH14Q7Z406 1995 aaKnown RBP25.4■■□□□ 1.66
UPF1-212ENST00000601689 CYP19A1P11511 503 aaPredicted RBP25.39■■□□□ 1.66
UPF1-212ENST00000601689 MSL1Q68DK7 614 aa25.38■■□□□ 1.65
UPF1-212ENST00000601689 ARHGEF1Q92888 912 aaKnown RBP25.38■■□□□ 1.65
UPF1-212ENST00000601689 SGIP1Q9BQI5 828 aa25.38■■□□□ 1.65
UPF1-212ENST00000601689 SNRPA1P09661 255 aaKnown RBP25.37■■□□□ 1.65
UPF1-212ENST00000601689 NLGN1Q8N2Q7 840 aa25.37■■□□□ 1.65
UPF1-212ENST00000601689 ZPR1O75312 459 aa25.36■■□□□ 1.65
UPF1-212ENST00000601689 INTS5Q6P9B9 1019 aaKnown RBP25.36■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms