RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 AMOTL2Q9Y2J4 779 aa22.37■■□□□ 1.17
UPF1-210ENST00000600689 C3P01024 1663 aa22.36■■□□□ 1.17
UPF1-210ENST00000600689 ITSN1Q15811 1721 aa22.36■■□□□ 1.17
UPF1-210ENST00000600689 CWC22Q9HCG8 908 aaKnown RBP22.36■■□□□ 1.17
UPF1-210ENST00000600689 AKAP12Q02952 1782 aa22.36■■□□□ 1.17
UPF1-210ENST00000600689 CDK12Q9NYV4 1490 aaPredicted RBP22.36■■□□□ 1.17
UPF1-210ENST00000600689 AATKQ6ZMQ8 1374 aa22.36■■□□□ 1.17
UPF1-210ENST00000600689 IBTKQ9P2D0 1353 aaPredicted RBP22.36■■□□□ 1.17
UPF1-210ENST00000600689 EID1Q9Y6B2 187 aa22.36■■□□□ 1.17
UPF1-210ENST00000600689 TTC21BQ7Z4L5 1316 aa22.36■■□□□ 1.17
UPF1-210ENST00000600689 TRIM6-TRIM34B2RNG4 842 aa22.35■■□□□ 1.17
UPF1-210ENST00000600689 ZNF500O60304 480 aaPredicted RBP22.35■■□□□ 1.17
UPF1-210ENST00000600689 GADD45BO75293 160 aaPredicted RBP22.35■■□□□ 1.17
UPF1-210ENST00000600689 CEP85Q6P2H3 762 aa22.35■■□□□ 1.17
UPF1-210ENST00000600689 AEBP1Q8IUX7 1158 aa22.35■■□□□ 1.17
UPF1-210ENST00000600689 ANO2Q9NQ90 1003 aa22.35■■□□□ 1.17
UPF1-210ENST00000600689 REC8O95072 547 aa22.35■■□□□ 1.17
UPF1-210ENST00000600689 ERC2O15083 957 aa22.34■■□□□ 1.17
UPF1-210ENST00000600689 CCDC39Q9UFE4 941 aa22.34■■□□□ 1.17
UPF1-210ENST00000600689 ZHX1Q9UKY1 873 aaPredicted RBP22.34■■□□□ 1.17
UPF1-210ENST00000600689 PALD1Q9ULE6 856 aa22.34■■□□□ 1.17
UPF1-210ENST00000600689 ANKRD44Q8N8A2 993 aa22.34■■□□□ 1.17
UPF1-210ENST00000600689 NECTIN2Q92692 538 aa22.34■■□□□ 1.17
UPF1-210ENST00000600689 ZNF428Q96B54 188 aa22.34■■□□□ 1.17
UPF1-210ENST00000600689 CFAP44Q96MT7 982 aa22.33■■□□□ 1.17
UPF1-210ENST00000600689 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP22.33■■□□□ 1.17
UPF1-210ENST00000600689 TSPY26PQ9H489 355 aa22.32■■□□□ 1.16
UPF1-210ENST00000600689 USP25Q9UHP3 1055 aa22.32■■□□□ 1.16
UPF1-210ENST00000600689 TTC12Q9H892 705 aaPredicted RBP22.32■■□□□ 1.16
UPF1-210ENST00000600689 PTCH1Q13635 1447 aa22.31■■□□□ 1.16
UPF1-210ENST00000600689 EIF4A2Q14240 407 aaKnown RBP22.31■■□□□ 1.16
UPF1-210ENST00000600689 MSH6P52701 1360 aa22.3■■□□□ 1.16
UPF1-210ENST00000600689 HSP90AB2PQ58FF8 381 aa22.3■■□□□ 1.16
UPF1-210ENST00000600689 TRHP20396 242 aaPredicted RBP22.3■■□□□ 1.16
UPF1-210ENST00000600689 BRPF1P55201 1214 aaPredicted RBP22.3■■□□□ 1.16
UPF1-210ENST00000600689 SLC4A2P04920 1241 aa22.29■■□□□ 1.16
UPF1-210ENST00000600689 HS1BP3Q53T59 392 aa22.29■■□□□ 1.16
UPF1-210ENST00000600689 SULT6B1Q6IMI4 303 aa22.29■■□□□ 1.16
UPF1-210ENST00000600689 MAP4K4O95819 1239 aaPredicted RBP22.29■■□□□ 1.16
UPF1-210ENST00000600689 PLEKHG3A1L390 1219 aa22.29■■□□□ 1.16
UPF1-210ENST00000600689 DLG5Q8TDM6 1919 aa22.28■■□□□ 1.16
UPF1-210ENST00000600689 ZNF853P0CG23 659 aa22.28■■□□□ 1.16
UPF1-210ENST00000600689 CSPP1Q1MSJ5 1256 aa22.28■■□□□ 1.16
UPF1-210ENST00000600689 SASS6Q6UVJ0 657 aa22.28■■□□□ 1.16
UPF1-210ENST00000600689 USP6P35125 1406 aa22.28■■□□□ 1.16
UPF1-210ENST00000600689 KIAA2012Q0VF49 1180 aa22.27■■□□□ 1.16
UPF1-210ENST00000600689 BCL11BQ9C0K0 894 aaPredicted RBP22.27■■□□□ 1.16
UPF1-210ENST00000600689 PDE1AP54750 535 aa22.27■■□□□ 1.15
UPF1-210ENST00000600689 G2E3Q7L622 706 aa22.26■■□□□ 1.15
UPF1-210ENST00000600689 PIK3R4Q99570 1358 aa22.26■■□□□ 1.15
UPF1-210ENST00000600689 RPAP2Q8IXW5 612 aaPredicted RBP22.26■■□□□ 1.15
UPF1-210ENST00000600689 NRKQ7Z2Y5 1582 aa22.26■■□□□ 1.15
UPF1-210ENST00000600689 TOPAZ1Q8N9V7 1692 aa22.25■■□□□ 1.15
UPF1-210ENST00000600689 MBD3O95983 291 aa22.25■■□□□ 1.15
UPF1-210ENST00000600689 USP48Q86UV5 1035 aa22.25■■□□□ 1.15
UPF1-210ENST00000600689 OVOS2A0A0J9YW53 1432 aa22.25■■□□□ 1.15
UPF1-210ENST00000600689 OVOS2Q6IE36 1432 aa22.25■■□□□ 1.15
UPF1-210ENST00000600689 FER1L4A9Z1Z3 1794 aa22.25■■□□□ 1.15
UPF1-210ENST00000600689 DYNC1I1O14576 645 aa22.24■■□□□ 1.15
UPF1-210ENST00000600689 HCLS1P14317 486 aaPredicted RBP22.24■■□□□ 1.15
UPF1-210ENST00000600689 CBX1P83916 185 aa22.24■■□□□ 1.15
UPF1-210ENST00000600689 TBX22Q9Y458 520 aa22.24■■□□□ 1.15
UPF1-210ENST00000600689 RGPD8O14715 1765 aaPredicted RBP22.24■■□□□ 1.15
UPF1-210ENST00000600689 THEMISQ8N1K5 641 aaPredicted RBP22.23■■□□□ 1.15
UPF1-210ENST00000600689 PRDM4Q9UKN5 801 aa22.23■■□□□ 1.15
UPF1-210ENST00000600689 ARHGAP23Q9P227 1491 aa22.23■■□□□ 1.15
UPF1-210ENST00000600689 SLIT1O75093 1534 aa22.22■■□□□ 1.15
UPF1-210ENST00000600689 NGDNQ8NEJ9 315 aaKnown RBP22.22■■□□□ 1.15
UPF1-210ENST00000600689 MAP7D2Q96T17 732 aa22.22■■□□□ 1.15
UPF1-210ENST00000600689 CHMP3Q9Y3E7 222 aa22.22■■□□□ 1.15
UPF1-210ENST00000600689 RTL1A6NKG5 1358 aa22.22■■□□□ 1.15
UPF1-210ENST00000600689 BRD1O95696 1058 aa22.22■■□□□ 1.15
UPF1-210ENST00000600689 TERF1P54274 439 aa22.22■■□□□ 1.15
UPF1-210ENST00000600689 LMOD3Q0VAK6 560 aa22.22■■□□□ 1.15
UPF1-210ENST00000600689 IL1RAPL2Q9NP60 686 aa22.22■■□□□ 1.15
UPF1-210ENST00000600689 RBM33Q96EV2 1170 aaKnown RBP22.22■■□□□ 1.15
UPF1-210ENST00000600689 PEAK1Q9H792 1746 aa22.22■■□□□ 1.15
UPF1-210ENST00000600689 KCNA6P17658 529 aa22.21■■□□□ 1.15
UPF1-210ENST00000600689 NUTM2GQ5VZR2 741 aa22.21■■□□□ 1.15
UPF1-210ENST00000600689 FIBPO43427 364 aa22.21■■□□□ 1.15
UPF1-210ENST00000600689 UNC5CLQ8IV45 518 aa22.21■■□□□ 1.15
UPF1-210ENST00000600689 CNPY2Q9Y2B0 182 aa22.21■■□□□ 1.15
UPF1-210ENST00000600689 ATP10DQ9P241 1426 aa22.2■■□□□ 1.14
UPF1-210ENST00000600689 SPC24Q8NBT2 197 aa22.2■■□□□ 1.14
UPF1-210ENST00000600689 ADCY5O95622 1261 aa22.2■■□□□ 1.14
UPF1-210ENST00000600689 ESYT1Q9BSJ8 1104 aa22.2■■□□□ 1.14
UPF1-210ENST00000600689 MAP3K19Q56UN5 1328 aa22.19■■□□□ 1.14
UPF1-210ENST00000600689 HMMRO75330 724 aa22.19■■□□□ 1.14
UPF1-210ENST00000600689 MCCP23508 829 aa22.19■■□□□ 1.14
UPF1-210ENST00000600689 DDX54Q8TDD1 881 aaKnown RBP22.19■■□□□ 1.14
UPF1-210ENST00000600689 SYAP1Q96A49 352 aaPredicted RBP22.19■■□□□ 1.14
UPF1-210ENST00000600689 FOXO3O43524 673 aa22.19■■□□□ 1.14
UPF1-210ENST00000600689 SSH2Q76I76 1423 aa22.18■■□□□ 1.14
UPF1-210ENST00000600689 IL25Q9H293 177 aa22.18■■□□□ 1.14
UPF1-210ENST00000600689 SPDYE4A6NLX3 237 aa22.17■■□□□ 1.14
UPF1-210ENST00000600689 IGSF3O75054 1194 aa22.17■■□□□ 1.14
UPF1-210ENST00000600689 CPA1P15085 419 aa22.17■■□□□ 1.14
UPF1-210ENST00000600689 NOLC1Q14978 699 aaKnown RBP eCLIP22.17■■□□□ 1.14
UPF1-210ENST00000600689 NUTM1Q86Y26 1132 aa22.17■■□□□ 1.14
UPF1-210ENST00000600689 DIP2AQ14689 1571 aa22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms