RNA–Protein interactions for RNA: ENST00000598359.5

SCAF1-203, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-203ENST00000598359 KDRP35968 1356 aa18.65■□□□□ 0.58
SCAF1-203ENST00000598359 PLEKHG2Q9H7P9 1386 aa18.65■□□□□ 0.58
SCAF1-203ENST00000598359 C4BP0C0L5 1744 aa18.64■□□□□ 0.57
SCAF1-203ENST00000598359 LINC00116Q8NCU8 138 aa18.64■□□□□ 0.57
SCAF1-203ENST00000598359 DCAF5Q96JK2 942 aa18.64■□□□□ 0.57
SCAF1-203ENST00000598359 ITPK1Q13572 414 aa18.63■□□□□ 0.57
SCAF1-203ENST00000598359 KLHL34Q8N239 644 aa18.63■□□□□ 0.57
SCAF1-203ENST00000598359 NPC1L1Q9UHC9 1359 aa18.63■□□□□ 0.57
SCAF1-203ENST00000598359 ERVV-2B6SEH9 535 aa18.62■□□□□ 0.57
SCAF1-203ENST00000598359 DIAPH1O60610 1272 aaKnown RBP18.62■□□□□ 0.57
SCAF1-203ENST00000598359 PHF14O94880 888 aa18.62■□□□□ 0.57
SCAF1-203ENST00000598359 HSP90AB1P08238 724 aaKnown RBP18.62■□□□□ 0.57
SCAF1-203ENST00000598359 C1orf141Q5JVX7 400 aa18.62■□□□□ 0.57
SCAF1-203ENST00000598359 AK7Q96M32 723 aa18.62■□□□□ 0.57
SCAF1-203ENST00000598359 POLD1P28340 1107 aa18.61■□□□□ 0.57
SCAF1-203ENST00000598359 ATP6V1AP38606 617 aa18.61■□□□□ 0.57
SCAF1-203ENST00000598359 CABP4P57796 275 aa18.61■□□□□ 0.57
SCAF1-203ENST00000598359 GPR162Q16538 588 aa18.61■□□□□ 0.57
SCAF1-203ENST00000598359 COL3A1P02461 1466 aaPredicted RBP18.6■□□□□ 0.57
SCAF1-203ENST00000598359 SLC4A9Q96Q91 983 aa18.6■□□□□ 0.57
SCAF1-203ENST00000598359 RBM42Q9BTD8 480 aaKnown RBP18.6■□□□□ 0.57
SCAF1-203ENST00000598359 COL24A1Q17RW2 1714 aa18.6■□□□□ 0.57
SCAF1-203ENST00000598359 MAP3K5Q99683 1374 aa18.59■□□□□ 0.57
SCAF1-203ENST00000598359 U2SURPO15042 1029 aaKnown RBP18.58■□□□□ 0.56
SCAF1-203ENST00000598359 NFATC2IPQ8NCF5 419 aa18.58■□□□□ 0.56
SCAF1-203ENST00000598359 UBR3Q6ZT12 1888 aa18.57■□□□□ 0.56
SCAF1-203ENST00000598359 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.57■□□□□ 0.56
SCAF1-203ENST00000598359 LGR6Q9HBX8 967 aa18.57■□□□□ 0.56
SCAF1-203ENST00000598359 GNPATO15228 680 aa18.56■□□□□ 0.56
SCAF1-203ENST00000598359 PTCD1O75127 700 aaKnown RBP18.56■□□□□ 0.56
SCAF1-203ENST00000598359 MTHFSDQ2M296 383 aaKnown RBP18.56■□□□□ 0.56
SCAF1-203ENST00000598359 AKAP4Q5JQC9 854 aa18.56■□□□□ 0.56
SCAF1-203ENST00000598359 FLAD1Q8NFF5 587 aa18.56■□□□□ 0.56
SCAF1-203ENST00000598359 NLGN2Q8NFZ4 835 aa18.55■□□□□ 0.56
SCAF1-203ENST00000598359 SCN11AQ9UI33 1791 aa18.53■□□□□ 0.56
SCAF1-203ENST00000598359 HMGB2P26583 209 aaKnown RBP18.53■□□□□ 0.56
SCAF1-203ENST00000598359 SSFA2P28290 1259 aa18.53■□□□□ 0.56
SCAF1-203ENST00000598359 RNMTO43148 476 aaKnown RBP18.52■□□□□ 0.56
SCAF1-203ENST00000598359 PPP2R1AP30153 589 aa18.52■□□□□ 0.56
SCAF1-203ENST00000598359 PELP1Q8IZL8 1130 aaKnown RBP18.51■□□□□ 0.55
SCAF1-203ENST00000598359 SLC52A2Q9HAB3 445 aa18.51■□□□□ 0.55
SCAF1-203ENST00000598359 SLC39A6Q13433 755 aa18.5■□□□□ 0.55
SCAF1-203ENST00000598359 COL5A3P25940 1745 aaPredicted RBP18.49■□□□□ 0.55
SCAF1-203ENST00000598359 CFAP53Q96M91 514 aa18.49■□□□□ 0.55
SCAF1-203ENST00000598359 ZNF831Q5JPB2 1677 aa18.49■□□□□ 0.55
SCAF1-203ENST00000598359 RTCBQ9Y3I0 505 aaKnown RBP18.48■□□□□ 0.55
SCAF1-203ENST00000598359 MRC1P22897 1456 aa18.47■□□□□ 0.55
SCAF1-203ENST00000598359 TJP1Q07157 1748 aa18.47■□□□□ 0.55
SCAF1-203ENST00000598359 PHACTR3Q96KR7 559 aa18.47■□□□□ 0.55
SCAF1-203ENST00000598359 CNTNAP4Q9C0A0 1308 aa18.47■□□□□ 0.55
SCAF1-203ENST00000598359 VIRMAQ69YN4 1812 aaKnown RBP18.46■□□□□ 0.55
SCAF1-203ENST00000598359 PRKAR2BP31323 418 aa18.46■□□□□ 0.55
SCAF1-203ENST00000598359 CRKLP46109 303 aaKnown RBP18.46■□□□□ 0.55
SCAF1-203ENST00000598359 TRAPPC3LQ5T215 181 aa18.46■□□□□ 0.55
SCAF1-203ENST00000598359 RC3H1Q5TC82 1133 aaKnown RBP18.46■□□□□ 0.55
SCAF1-203ENST00000598359 ARHGEF1Q92888 912 aaKnown RBP18.46■□□□□ 0.55
SCAF1-203ENST00000598359 ADAMTS7Q9UKP4 1686 aa18.46■□□□□ 0.55
SCAF1-203ENST00000598359 MYH14Q7Z406 1995 aaKnown RBP18.45■□□□□ 0.54
SCAF1-203ENST00000598359 RPS6KA4O75676 772 aa18.45■□□□□ 0.54
SCAF1-203ENST00000598359 DNAJC10Q8IXB1 793 aa18.45■□□□□ 0.54
SCAF1-203ENST00000598359 RSPH6AQ9H0K4 717 aa18.45■□□□□ 0.54
SCAF1-203ENST00000598359 U2AF1L5P0DN76 240 aaPredicted RBP18.44■□□□□ 0.54
SCAF1-203ENST00000598359 U2AF1Q01081 240 aaKnown RBP eCLIP18.44■□□□□ 0.54
SCAF1-203ENST00000598359 IL17REQ8NFR9 667 aa18.44■□□□□ 0.54
SCAF1-203ENST00000598359 KCPQ6ZWJ8 1503 aa18.44■□□□□ 0.54
SCAF1-203ENST00000598359 MMP10P09238 476 aa18.43■□□□□ 0.54
SCAF1-203ENST00000598359 YBX3P16989 372 aaKnown RBP eCLIP18.43■□□□□ 0.542e-7■■□□□ 13
SCAF1-203ENST00000598359 GAS2L2Q8NHY3 880 aa18.43■□□□□ 0.54
SCAF1-203ENST00000598359 WWC3Q9ULE0 1092 aa18.43■□□□□ 0.54
SCAF1-203ENST00000598359 GNAT3A8MTJ3 354 aa18.42■□□□□ 0.54
SCAF1-203ENST00000598359 RFC4P35249 363 aa18.42■□□□□ 0.54
SCAF1-203ENST00000598359 INTS5Q6P9B9 1019 aaKnown RBP18.42■□□□□ 0.54
SCAF1-203ENST00000598359 SRP68Q9UHB9 627 aaKnown RBP18.42■□□□□ 0.54
SCAF1-203ENST00000598359 NUDCQ9Y266 331 aa18.42■□□□□ 0.54
SCAF1-203ENST00000598359 CD2APQ9Y5K6 639 aa18.42■□□□□ 0.54
SCAF1-203ENST00000598359 C4AP0C0L4 1744 aa18.41■□□□□ 0.54
SCAF1-203ENST00000598359 GRIN3BO60391 1043 aa18.41■□□□□ 0.54
SCAF1-203ENST00000598359 GYS1P13807 737 aa18.41■□□□□ 0.54
SCAF1-203ENST00000598359 ADRA2BP18089 450 aa18.41■□□□□ 0.54
SCAF1-203ENST00000598359 CICQ96RK0 1608 aaPredicted RBP18.41■□□□□ 0.54
SCAF1-203ENST00000598359 HSPA6P17066 643 aa18.4■□□□□ 0.54
SCAF1-203ENST00000598359 TEFQ10587 303 aa18.4■□□□□ 0.54
SCAF1-203ENST00000598359 CYP19A1P11511 503 aaPredicted RBP18.39■□□□□ 0.53
SCAF1-203ENST00000598359 CCDC87Q9NVE4 849 aa18.39■□□□□ 0.53
SCAF1-203ENST00000598359 ATP10DQ9P241 1426 aa18.39■□□□□ 0.53
SCAF1-203ENST00000598359 DDX10Q13206 875 aaKnown RBP18.37■□□□□ 0.53
SCAF1-203ENST00000598359 TTC5Q8N0Z6 440 aa18.37■□□□□ 0.53
SCAF1-203ENST00000598359 NLGN1Q8N2Q7 840 aa18.37■□□□□ 0.53
SCAF1-203ENST00000598359 GPBP1L1Q9HC44 474 aaPredicted RBP18.37■□□□□ 0.53
SCAF1-203ENST00000598359 ZBTB1Q9Y2K1 713 aa18.37■□□□□ 0.53
SCAF1-203ENST00000598359 UBR2Q8IWV8 1755 aa18.37■□□□□ 0.53
SCAF1-203ENST00000598359 KCNQ3O43525 872 aa18.36■□□□□ 0.53
SCAF1-203ENST00000598359 SIPA1L3O60292 1781 aaPredicted RBP18.36■□□□□ 0.53
SCAF1-203ENST00000598359 FCHSD2O94868 740 aa18.36■□□□□ 0.53
SCAF1-203ENST00000598359 FKBP8Q14318 412 aa18.36■□□□□ 0.53
SCAF1-203ENST00000598359 MCM10Q7L590 875 aa18.36■□□□□ 0.53
SCAF1-203ENST00000598359 ZNF496Q96IT1 587 aaPredicted RBP18.36■□□□□ 0.53
SCAF1-203ENST00000598359 USP42Q9H9J4 1324 aaKnown RBP18.36■□□□□ 0.53
SCAF1-203ENST00000598359 CEMIPQ8WUJ3 1361 aa18.35■□□□□ 0.53
SCAF1-203ENST00000598359 SOS1Q07889 1333 aaPredicted RBP18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms