RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 AMIGO3Q86WK7 504 aa20.34■□□□□ 0.85
LIG1-215ENST00000597901 RBM42Q9BTD8 480 aaKnown RBP20.34■□□□□ 0.85
LIG1-215ENST00000597901 SLC4A9Q96Q91 983 aa20.33■□□□□ 0.85
LIG1-215ENST00000597901 KDM6AO15550 1401 aaPredicted RBP20.33■□□□□ 0.84
LIG1-215ENST00000597901 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.32■□□□□ 0.84
LIG1-215ENST00000597901 MTHFSDQ2M296 383 aaKnown RBP20.32■□□□□ 0.84
LIG1-215ENST00000597901 LGR6Q9HBX8 967 aa20.32■□□□□ 0.84
LIG1-215ENST00000597901 ITGB4P16144 1822 aa20.32■□□□□ 0.84
LIG1-215ENST00000597901 U2SURPO15042 1029 aaKnown RBP20.31■□□□□ 0.84
LIG1-215ENST00000597901 MSL1Q68DK7 614 aa20.31■□□□□ 0.84
LIG1-215ENST00000597901 PHF14O94880 888 aa20.3■□□□□ 0.84
LIG1-215ENST00000597901 KLHL34Q8N239 644 aa20.3■□□□□ 0.84
LIG1-215ENST00000597901 SSFA2P28290 1259 aa20.29■□□□□ 0.84
LIG1-215ENST00000597901 MAP3K5Q99683 1374 aa20.29■□□□□ 0.84
LIG1-215ENST00000597901 GNPATO15228 680 aa20.28■□□□□ 0.84
LIG1-215ENST00000597901 RNMTO43148 476 aaKnown RBP20.28■□□□□ 0.84
LIG1-215ENST00000597901 PTCD1O75127 700 aaKnown RBP20.28■□□□□ 0.84
LIG1-215ENST00000597901 PPP2R1AP30153 589 aa20.28■□□□□ 0.84
LIG1-215ENST00000597901 RC3H1Q5TC82 1133 aaKnown RBP20.27■□□□□ 0.84
LIG1-215ENST00000597901 CFAP53Q96M91 514 aa20.27■□□□□ 0.84
LIG1-215ENST00000597901 SLC52A2Q9HAB3 445 aa20.27■□□□□ 0.84
LIG1-215ENST00000597901 QSER1Q2KHR3 1735 aa20.27■□□□□ 0.83
LIG1-215ENST00000597901 TRAPPC3LQ5T215 181 aa20.25■□□□□ 0.83
LIG1-215ENST00000597901 RTCBQ9Y3I0 505 aaKnown RBP20.25■□□□□ 0.83
LIG1-215ENST00000597901 C5P01031 1676 aa20.24■□□□□ 0.83
LIG1-215ENST00000597901 NUDCQ9Y266 331 aa20.24■□□□□ 0.83
LIG1-215ENST00000597901 C4BP0C0L5 1744 aa20.24■□□□□ 0.83
LIG1-215ENST00000597901 COL3A1P02461 1466 aaPredicted RBP20.24■□□□□ 0.83
LIG1-215ENST00000597901 RPS6KA4O75676 772 aa20.23■□□□□ 0.83
LIG1-215ENST00000597901 NLGN2Q8NFZ4 835 aa20.23■□□□□ 0.83
LIG1-215ENST00000597901 GPR162Q16538 588 aa20.22■□□□□ 0.83
LIG1-215ENST00000597901 TUBGCP6Q96RT7 1819 aa20.22■□□□□ 0.83
LIG1-215ENST00000597901 SLC39A6Q13433 755 aa20.21■□□□□ 0.83
LIG1-215ENST00000597901 GAS2L2Q8NHY3 880 aa20.21■□□□□ 0.83
LIG1-215ENST00000597901 ARHGEF1Q92888 912 aaKnown RBP20.21■□□□□ 0.83
LIG1-215ENST00000597901 PHACTR3Q96KR7 559 aa20.21■□□□□ 0.83
LIG1-215ENST00000597901 CD2APQ9Y5K6 639 aa20.21■□□□□ 0.83
LIG1-215ENST00000597901 CNTNAP4Q9C0A0 1308 aa20.21■□□□□ 0.83
LIG1-215ENST00000597901 TAF1LQ8IZX4 1826 aa20.2■□□□□ 0.82
LIG1-215ENST00000597901 GNAT3A8MTJ3 354 aa20.2■□□□□ 0.82
LIG1-215ENST00000597901 IL17REQ8NFR9 667 aa20.2■□□□□ 0.82
LIG1-215ENST00000597901 U2AF1L5P0DN76 240 aaPredicted RBP20.19■□□□□ 0.82
LIG1-215ENST00000597901 ADRA2BP18089 450 aa20.19■□□□□ 0.82
LIG1-215ENST00000597901 PRKAR2BP31323 418 aa20.19■□□□□ 0.82
LIG1-215ENST00000597901 U2AF1Q01081 240 aaKnown RBP eCLIP20.19■□□□□ 0.82
LIG1-215ENST00000597901 PELP1Q8IZL8 1130 aaKnown RBP20.19■□□□□ 0.82
LIG1-215ENST00000597901 RSPH6AQ9H0K4 717 aa20.19■□□□□ 0.82
LIG1-215ENST00000597901 COL24A1Q17RW2 1714 aa20.19■□□□□ 0.82
LIG1-215ENST00000597901 CRKLP46109 303 aaKnown RBP20.18■□□□□ 0.82
LIG1-215ENST00000597901 DNAJC10Q8IXB1 793 aa20.18■□□□□ 0.82
LIG1-215ENST00000597901 NLGN1Q8N2Q7 840 aa20.18■□□□□ 0.82
LIG1-215ENST00000597901 FCHSD2O94868 740 aa20.17■□□□□ 0.82
LIG1-215ENST00000597901 RFC4P35249 363 aa20.17■□□□□ 0.82
LIG1-215ENST00000597901 INTS5Q6P9B9 1019 aaKnown RBP20.17■□□□□ 0.82
LIG1-215ENST00000597901 MMP10P09238 476 aa20.14■□□□□ 0.81
LIG1-215ENST00000597901 CYP19A1P11511 503 aaPredicted RBP20.14■□□□□ 0.81
LIG1-215ENST00000597901 GYS1P13807 737 aa20.14■□□□□ 0.81
LIG1-215ENST00000597901 TEFQ10587 303 aa20.14■□□□□ 0.81
LIG1-215ENST00000597901 VSIG10Q8N0Z9 540 aa20.13■□□□□ 0.81
LIG1-215ENST00000597901 CCDC87Q9NVE4 849 aa20.13■□□□□ 0.81
LIG1-215ENST00000597901 UBR3Q6ZT12 1888 aa20.13■□□□□ 0.81
LIG1-215ENST00000597901 DDX10Q13206 875 aaKnown RBP20.12■□□□□ 0.81
LIG1-215ENST00000597901 ZNF831Q5JPB2 1677 aa20.11■□□□□ 0.81
LIG1-215ENST00000597901 GRIN3BO60391 1043 aa20.11■□□□□ 0.81
LIG1-215ENST00000597901 YBX3P16989 372 aaKnown RBP eCLIP20.11■□□□□ 0.81
LIG1-215ENST00000597901 TTC5Q8N0Z6 440 aa20.11■□□□□ 0.81
LIG1-215ENST00000597901 ZNF790Q6PG37 636 aa20.1■□□□□ 0.81
LIG1-215ENST00000597901 ZNF784Q8NCA9 323 aaPredicted RBP20.1■□□□□ 0.81
LIG1-215ENST00000597901 SRP68Q9UHB9 627 aaKnown RBP20.1■□□□□ 0.81
LIG1-215ENST00000597901 SCN11AQ9UI33 1791 aa20.1■□□□□ 0.81
LIG1-215ENST00000597901 MRC1P22897 1456 aa20.1■□□□□ 0.81
LIG1-215ENST00000597901 ZNF496Q96IT1 587 aaPredicted RBP20.09■□□□□ 0.81
LIG1-215ENST00000597901 RTF1Q92541 710 aaKnown RBP20.08■□□□□ 0.81
LIG1-215ENST00000597901 PARP3Q9Y6F1 533 aa20.08■□□□□ 0.81
LIG1-215ENST00000597901 CEMIPQ8WUJ3 1361 aa20.08■□□□□ 0.8
LIG1-215ENST00000597901 BTBD11A6QL63 1104 aa20.07■□□□□ 0.8
LIG1-215ENST00000597901 STARD3NLO95772 234 aa20.07■□□□□ 0.8
LIG1-215ENST00000597901 FKBP8Q14318 412 aa20.07■□□□□ 0.8
LIG1-215ENST00000597901 RALBP1Q15311 655 aa20.07■□□□□ 0.8
LIG1-215ENST00000597901 TEX13AQ9BXU3 409 aaPredicted RBP20.07■□□□□ 0.8
LIG1-215ENST00000597901 SOS1Q07889 1333 aaPredicted RBP20.06■□□□□ 0.8
LIG1-215ENST00000597901 USP42Q9H9J4 1324 aaKnown RBP20.06■□□□□ 0.8
LIG1-215ENST00000597901 KCNQ3O43525 872 aa20.06■□□□□ 0.8
LIG1-215ENST00000597901 HTATSF1O43719 755 aaKnown RBP20.06■□□□□ 0.8
LIG1-215ENST00000597901 ZPR1O75312 459 aa20.06■□□□□ 0.8
LIG1-215ENST00000597901 MCM10Q7L590 875 aa20.06■□□□□ 0.8
LIG1-215ENST00000597901 ZBTB1Q9Y2K1 713 aa20.06■□□□□ 0.8
LIG1-215ENST00000597901 CANXP27824 592 aaKnown RBP20.05■□□□□ 0.8
LIG1-215ENST00000597901 TM4SF1P30408 202 aa20.05■□□□□ 0.8
LIG1-215ENST00000597901 TGFB2P61812 414 aa20.05■□□□□ 0.8
LIG1-215ENST00000597901 DCTN1Q14203 1278 aa20.05■□□□□ 0.8
LIG1-215ENST00000597901 USPL1Q5W0Q7 1092 aa20.05■□□□□ 0.8
LIG1-215ENST00000597901 ADAMTS7Q9UKP4 1686 aa20.05■□□□□ 0.8
LIG1-215ENST00000597901 KCPQ6ZWJ8 1503 aa20.04■□□□□ 0.8
LIG1-215ENST00000597901 FMNL2Q96PY5 1086 aa20.04■□□□□ 0.8
LIG1-215ENST00000597901 NARFQ9UHQ1 456 aa20.04■□□□□ 0.8
LIG1-215ENST00000597901 WWC3Q9ULE0 1092 aa20.04■□□□□ 0.8
LIG1-215ENST00000597901 MYH14Q7Z406 1995 aaKnown RBP20.04■□□□□ 0.8
LIG1-215ENST00000597901 COL5A3P25940 1745 aaPredicted RBP20.03■□□□□ 0.8
LIG1-215ENST00000597901 NEFMP07197 916 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms