RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 IFNL2Q8IZJ0 200 aa22.82■■□□□ 1.24
SHKBP1-215ENST00000597649 HSPA6P17066 643 aa22.81■■□□□ 1.24
SHKBP1-215ENST00000597649 SLC4A9Q96Q91 983 aa22.81■■□□□ 1.24
SHKBP1-215ENST00000597649 MMP10P09238 476 aa22.8■■□□□ 1.24
SHKBP1-215ENST00000597649 KIF3CO14782 793 aa22.79■■□□□ 1.24
SHKBP1-215ENST00000597649 EIF4A2Q14240 407 aaKnown RBP22.79■■□□□ 1.24
SHKBP1-215ENST00000597649 TNNT2P45379 298 aaPredicted RBP22.76■■□□□ 1.23
SHKBP1-215ENST00000597649 ANKRD26Q9UPS8 1709 aa22.76■■□□□ 1.23
SHKBP1-215ENST00000597649 A0A0G2JLW4 131 aa22.75■■□□□ 1.23
SHKBP1-215ENST00000597649 TRAPPC3LQ5T215 181 aa22.75■■□□□ 1.23
SHKBP1-215ENST00000597649 KDRP35968 1356 aa22.75■■□□□ 1.23
SHKBP1-215ENST00000597649 PXDNLA1KZ92 1463 aa22.74■■□□□ 1.23
SHKBP1-215ENST00000597649 ARHGEF1Q92888 912 aaKnown RBP22.74■■□□□ 1.23
SHKBP1-215ENST00000597649 RTCBQ9Y3I0 505 aaKnown RBP22.74■■□□□ 1.23
SHKBP1-215ENST00000597649 ERVV-2B6SEH9 535 aa22.73■■□□□ 1.23
SHKBP1-215ENST00000597649 RBM42Q9BTD8 480 aaKnown RBP22.73■■□□□ 1.23
SHKBP1-215ENST00000597649 TGFB2P61812 414 aa22.72■■□□□ 1.23
SHKBP1-215ENST00000597649 NLGN1Q8N2Q7 840 aa22.72■■□□□ 1.23
SHKBP1-215ENST00000597649 GYS1P13807 737 aa22.71■■□□□ 1.23
SHKBP1-215ENST00000597649 RC3H1Q5TC82 1133 aaKnown RBP22.71■■□□□ 1.23
SHKBP1-215ENST00000597649 BCS1LQ9Y276 419 aa22.71■■□□□ 1.23
SHKBP1-215ENST00000597649 CLSPNQ9HAW4 1339 aa22.7■■□□□ 1.22
SHKBP1-215ENST00000597649 CICQ96RK0 1608 aaPredicted RBP22.69■■□□□ 1.22
SHKBP1-215ENST00000597649 RPS6KA4O75676 772 aa22.69■■□□□ 1.22
SHKBP1-215ENST00000597649 DPEP1P16444 411 aa22.69■■□□□ 1.22
SHKBP1-215ENST00000597649 DCAF5Q96JK2 942 aa22.69■■□□□ 1.22
SHKBP1-215ENST00000597649 POLR3GLQ9BT43 218 aa22.69■■□□□ 1.22
SHKBP1-215ENST00000597649 KIAA1551Q9HCM1 1747 aa22.68■■□□□ 1.22
SHKBP1-215ENST00000597649 C10orf71Q711Q0 1435 aa22.67■■□□□ 1.22
SHKBP1-215ENST00000597649 CNTNAP4Q9C0A0 1308 aa22.67■■□□□ 1.22
SHKBP1-215ENST00000597649 ADRA2BP18089 450 aa22.67■■□□□ 1.22
SHKBP1-215ENST00000597649 KCNA3P22001 575 aa22.67■■□□□ 1.22
SHKBP1-215ENST00000597649 ARHGAP27Q6ZUM4 889 aa22.67■■□□□ 1.22
SHKBP1-215ENST00000597649 KDM6AO15550 1401 aaPredicted RBP22.66■■□□□ 1.22
SHKBP1-215ENST00000597649 KIF13BQ9NQT8 1826 aa22.66■■□□□ 1.22
SHKBP1-215ENST00000597649 RFC4P35249 363 aa22.66■■□□□ 1.22
SHKBP1-215ENST00000597649 PLEKHO1Q53GL0 409 aaPredicted RBP22.66■■□□□ 1.22
SHKBP1-215ENST00000597649 N4BP2Q86UW6 1770 aaPredicted RBP22.66■■□□□ 1.22
SHKBP1-215ENST00000597649 PLEKHG2Q9H7P9 1386 aa22.65■■□□□ 1.22
SHKBP1-215ENST00000597649 HSP90AB1P08238 724 aaKnown RBP22.65■■□□□ 1.22
SHKBP1-215ENST00000597649 ZNF530Q6P9A1 599 aaPredicted RBP22.65■■□□□ 1.22
SHKBP1-215ENST00000597649 CCDC87Q9NVE4 849 aa22.65■■□□□ 1.22
SHKBP1-215ENST00000597649 FCHSD2O94868 740 aa22.64■■□□□ 1.21
SHKBP1-215ENST00000597649 CABP4P57796 275 aa22.64■■□□□ 1.21
SHKBP1-215ENST00000597649 AEBP1Q8IUX7 1158 aa22.64■■□□□ 1.21
SHKBP1-215ENST00000597649 PARP3Q9Y6F1 533 aa22.64■■□□□ 1.21
SHKBP1-215ENST00000597649 PTCD1O75127 700 aaKnown RBP22.63■■□□□ 1.21
SHKBP1-215ENST00000597649 DNAJC5GQ8N7S2 189 aa22.63■■□□□ 1.21
SHKBP1-215ENST00000597649 PANK3Q9H999 370 aa22.63■■□□□ 1.21
SHKBP1-215ENST00000597649 NMRK2Q9NPI5 230 aa22.63■■□□□ 1.21
SHKBP1-215ENST00000597649 SRP68Q9UHB9 627 aaKnown RBP22.63■■□□□ 1.21
SHKBP1-215ENST00000597649 MYH14Q7Z406 1995 aaKnown RBP22.62■■□□□ 1.21
SHKBP1-215ENST00000597649 TOMM70O94826 608 aa22.62■■□□□ 1.21
SHKBP1-215ENST00000597649 TIMELESSQ9UNS1 1208 aa22.62■■□□□ 1.21
SHKBP1-215ENST00000597649 MTHFSP49914 203 aa22.61■■□□□ 1.21
SHKBP1-215ENST00000597649 AMOTQ4VCS5 1084 aa22.61■■□□□ 1.21
SHKBP1-215ENST00000597649 NFATC2IPQ8NCF5 419 aa22.61■■□□□ 1.21
SHKBP1-215ENST00000597649 ZNF831Q5JPB2 1677 aa22.61■■□□□ 1.21
SHKBP1-215ENST00000597649 CRKLP46109 303 aaKnown RBP22.6■■□□□ 1.21
SHKBP1-215ENST00000597649 APLP1P51693 650 aa22.6■■□□□ 1.21
SHKBP1-215ENST00000597649 FKBP8Q14318 412 aa22.6■■□□□ 1.21
SHKBP1-215ENST00000597649 C4AP0C0L4 1744 aa22.6■■□□□ 1.21
SHKBP1-215ENST00000597649 DDR1Q08345 913 aa22.59■■□□□ 1.21
SHKBP1-215ENST00000597649 C9orf131Q5VYM1 1079 aa22.59■■□□□ 1.21
SHKBP1-215ENST00000597649 COL5A3P25940 1745 aaPredicted RBP22.59■■□□□ 1.21
SHKBP1-215ENST00000597649 INTS5Q6P9B9 1019 aaKnown RBP22.57■■□□□ 1.2
SHKBP1-215ENST00000597649 PIM2Q9P1W9 311 aa22.57■■□□□ 1.2
SHKBP1-215ENST00000597649 PCNTO95613 3336 aa22.57■■□□□ 1.2
SHKBP1-215ENST00000597649 SULT6B1Q6IMI4 303 aa22.56■■□□□ 1.2
SHKBP1-215ENST00000597649 USP42Q9H9J4 1324 aaKnown RBP22.56■■□□□ 1.2
SHKBP1-215ENST00000597649 C1orf141Q5JVX7 400 aa22.55■■□□□ 1.2
SHKBP1-215ENST00000597649 HSPA5P11021 654 aaKnown RBP22.54■■□□□ 1.2
SHKBP1-215ENST00000597649 TM4SF1P30408 202 aa22.54■■□□□ 1.2
SHKBP1-215ENST00000597649 CHRNA5P30532 468 aa22.54■■□□□ 1.2
SHKBP1-215ENST00000597649 DALRD3Q5D0E6 543 aaKnown RBP22.54■■□□□ 1.2
SHKBP1-215ENST00000597649 MORC1Q86VD1 984 aa22.54■■□□□ 1.2
SHKBP1-215ENST00000597649 BRCA1P38398 1863 aaKnown RBP22.54■■□□□ 1.2
SHKBP1-215ENST00000597649 IL13P35225 146 aa22.53■■□□□ 1.2
SHKBP1-215ENST00000597649 POLRMTO00411 1230 aaKnown RBP22.52■■□□□ 1.2
SHKBP1-215ENST00000597649 HTRA3P83110 453 aa22.52■■□□□ 1.2
SHKBP1-215ENST00000597649 DNAJC10Q8IXB1 793 aa22.51■■□□□ 1.19
SHKBP1-215ENST00000597649 RBM46Q8TBY0 533 aaKnown RBP22.51■■□□□ 1.19
SHKBP1-215ENST00000597649 LGR6Q9HBX8 967 aa22.51■■□□□ 1.19
SHKBP1-215ENST00000597649 EIF4G2P78344 907 aaKnown RBP eCLIP22.5■■□□□ 1.19
SHKBP1-215ENST00000597649 USPL1Q5W0Q7 1092 aa22.49■■□□□ 1.19
SHKBP1-215ENST00000597649 RNF181Q9P0P0 153 aa22.49■■□□□ 1.19
SHKBP1-215ENST00000597649 RRAGCQ9HB90 399 aa22.48■■□□□ 1.19
SHKBP1-215ENST00000597649 KCPQ6ZWJ8 1503 aa22.47■■□□□ 1.19
SHKBP1-215ENST00000597649 SLC39A6Q13433 755 aa22.47■■□□□ 1.19
SHKBP1-215ENST00000597649 AKAP4Q5JQC9 854 aa22.47■■□□□ 1.19
SHKBP1-215ENST00000597649 TJP1Q07157 1748 aa22.47■■□□□ 1.19
SHKBP1-215ENST00000597649 ARFGEF1Q9Y6D6 1849 aa22.47■■□□□ 1.19
SHKBP1-215ENST00000597649 ADAMTS7Q9UKP4 1686 aa22.46■■□□□ 1.19
SHKBP1-215ENST00000597649 CYP19A1P11511 503 aaPredicted RBP22.46■■□□□ 1.19
SHKBP1-215ENST00000597649 SLC52A2Q9HAB3 445 aa22.46■■□□□ 1.19
SHKBP1-215ENST00000597649 SOS1Q07889 1333 aaPredicted RBP22.46■■□□□ 1.19
SHKBP1-215ENST00000597649 ZPR1O75312 459 aa22.45■■□□□ 1.18
SHKBP1-215ENST00000597649 C16orf71Q8IYS4 520 aaPredicted RBP22.45■■□□□ 1.18
SHKBP1-215ENST00000597649 PRELPP51888 382 aa22.44■■□□□ 1.18
SHKBP1-215ENST00000597649 FSTL1Q12841 308 aa22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms