RNA–Protein interactions for RNA: ENST00000597209.1

CHMP2A-203, Transcript of charged multivesicular body protein 2A, humanhuman

TSL 2

Gene CHMP2A, Length 662 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2A-203ENST00000597209 ATP6V1AP38606 617 aa24.24■■□□□ 1.47
CHMP2A-203ENST00000597209 CABP4P57796 275 aa24.24■■□□□ 1.47
CHMP2A-203ENST00000597209 ITPK1Q13572 414 aa24.23■■□□□ 1.47
CHMP2A-203ENST00000597209 AKAP4Q5JQC9 854 aa24.23■■□□□ 1.47
CHMP2A-203ENST00000597209 LINC00116Q8NCU8 138 aa24.23■■□□□ 1.47
CHMP2A-203ENST00000597209 UBR3Q6ZT12 1888 aa24.23■■□□□ 1.47
CHMP2A-203ENST00000597209 COL3A1P02461 1466 aaPredicted RBP24.22■■□□□ 1.47
CHMP2A-203ENST00000597209 SSFA2P28290 1259 aa24.22■■□□□ 1.47
CHMP2A-203ENST00000597209 HMOX1P09601 288 aa24.2■■□□□ 1.46
CHMP2A-203ENST00000597209 SCN11AQ9UI33 1791 aa24.19■■□□□ 1.46
CHMP2A-203ENST00000597209 AMIGO3Q86WK7 504 aa24.19■■□□□ 1.46
CHMP2A-203ENST00000597209 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.18■■□□□ 1.46
CHMP2A-203ENST00000597209 NFATC2IPQ8NCF5 419 aa24.18■■□□□ 1.46
CHMP2A-203ENST00000597209 SLC4A9Q96Q91 983 aa24.18■■□□□ 1.46
CHMP2A-203ENST00000597209 RBM42Q9BTD8 480 aaKnown RBP24.17■■□□□ 1.46
CHMP2A-203ENST00000597209 CNGB1Q14028 1251 aaPredicted RBP24.16■■□□□ 1.46
CHMP2A-203ENST00000597209 RC3H1Q5TC82 1133 aaKnown RBP24.16■■□□□ 1.46
CHMP2A-203ENST00000597209 GNPATO15228 680 aa24.15■■□□□ 1.46
CHMP2A-203ENST00000597209 PHF14O94880 888 aa24.15■■□□□ 1.46
CHMP2A-203ENST00000597209 YY1P25490 414 aa24.15■■□□□ 1.46
CHMP2A-203ENST00000597209 MTHFSDQ2M296 383 aaKnown RBP24.15■■□□□ 1.46
CHMP2A-203ENST00000597209 MSL1Q68DK7 614 aa24.15■■□□□ 1.46
CHMP2A-203ENST00000597209 COL5A3P25940 1745 aaPredicted RBP24.14■■□□□ 1.45
CHMP2A-203ENST00000597209 SLC52A2Q9HAB3 445 aa24.14■■□□□ 1.45
CHMP2A-203ENST00000597209 MRC1P22897 1456 aa24.13■■□□□ 1.45
CHMP2A-203ENST00000597209 RNMTO43148 476 aaKnown RBP24.13■■□□□ 1.45
CHMP2A-203ENST00000597209 KLHL34Q8N239 644 aa24.13■■□□□ 1.45
CHMP2A-203ENST00000597209 CFAP53Q96M91 514 aa24.13■■□□□ 1.45
CHMP2A-203ENST00000597209 LGR6Q9HBX8 967 aa24.13■■□□□ 1.45
CHMP2A-203ENST00000597209 ADAMTS7Q9UKP4 1686 aa24.13■■□□□ 1.45
CHMP2A-203ENST00000597209 CNTNAP4Q9C0A0 1308 aa24.12■■□□□ 1.45
CHMP2A-203ENST00000597209 U2SURPO15042 1029 aaKnown RBP24.12■■□□□ 1.45
CHMP2A-203ENST00000597209 SMIM5Q71RC9 77 aa24.12■■□□□ 1.45
CHMP2A-203ENST00000597209 CICQ96RK0 1608 aaPredicted RBP24.12■■□□□ 1.45
CHMP2A-203ENST00000597209 RTCBQ9Y3I0 505 aaKnown RBP24.11■■□□□ 1.45
CHMP2A-203ENST00000597209 ADRA2BP18089 450 aa24.1■■□□□ 1.45
CHMP2A-203ENST00000597209 PPP2R1AP30153 589 aa24.1■■□□□ 1.45
CHMP2A-203ENST00000597209 CD2APQ9Y5K6 639 aa24.1■■□□□ 1.45
CHMP2A-203ENST00000597209 PTCD1O75127 700 aaKnown RBP24.09■■□□□ 1.45
CHMP2A-203ENST00000597209 RPS6KA4O75676 772 aa24.09■■□□□ 1.45
CHMP2A-203ENST00000597209 TRAPPC3LQ5T215 181 aa24.09■■□□□ 1.45
CHMP2A-203ENST00000597209 NLGN2Q8NFZ4 835 aa24.09■■□□□ 1.45
CHMP2A-203ENST00000597209 VIRMAQ69YN4 1812 aaKnown RBP24.08■■□□□ 1.45
CHMP2A-203ENST00000597209 GAS2L2Q8NHY3 880 aa24.08■■□□□ 1.45
CHMP2A-203ENST00000597209 NUDCQ9Y266 331 aa24.07■■□□□ 1.44
CHMP2A-203ENST00000597209 GPR162Q16538 588 aa24.06■■□□□ 1.44
CHMP2A-203ENST00000597209 TJP1Q07157 1748 aa24.05■■□□□ 1.44
CHMP2A-203ENST00000597209 ARHGEF1Q92888 912 aaKnown RBP24.05■■□□□ 1.44
CHMP2A-203ENST00000597209 MYH14Q7Z406 1995 aaKnown RBP24.05■■□□□ 1.44
CHMP2A-203ENST00000597209 CRKLP46109 303 aaKnown RBP24.04■■□□□ 1.44
CHMP2A-203ENST00000597209 RSPH6AQ9H0K4 717 aa24.04■■□□□ 1.44
CHMP2A-203ENST00000597209 GNAT3A8MTJ3 354 aa24.03■■□□□ 1.44
CHMP2A-203ENST00000597209 NLGN1Q8N2Q7 840 aa24.03■■□□□ 1.44
CHMP2A-203ENST00000597209 CHD4Q14839 1912 aa24.02■■□□□ 1.44
CHMP2A-203ENST00000597209 KCPQ6ZWJ8 1503 aa24.01■■□□□ 1.43
CHMP2A-203ENST00000597209 RFC4P35249 363 aa24.01■■□□□ 1.43
CHMP2A-203ENST00000597209 SLC39A6Q13433 755 aa24.01■■□□□ 1.43
CHMP2A-203ENST00000597209 PRKAR2BP31323 418 aa24■■□□□ 1.43
CHMP2A-203ENST00000597209 VSIG10Q8N0Z9 540 aa24■■□□□ 1.43
CHMP2A-203ENST00000597209 IL17REQ8NFR9 667 aa24■■□□□ 1.43
CHMP2A-203ENST00000597209 FCHSD2O94868 740 aa23.99■■□□□ 1.43
CHMP2A-203ENST00000597209 GYS1P13807 737 aa23.99■■□□□ 1.43
CHMP2A-203ENST00000597209 INTS5Q6P9B9 1019 aaKnown RBP23.99■■□□□ 1.43
CHMP2A-203ENST00000597209 DNAJC10Q8IXB1 793 aa23.99■■□□□ 1.43
CHMP2A-203ENST00000597209 PHACTR3Q96KR7 559 aa23.99■■□□□ 1.43
CHMP2A-203ENST00000597209 GRIN3BO60391 1043 aa23.98■■□□□ 1.43
CHMP2A-203ENST00000597209 MMP10P09238 476 aa23.98■■□□□ 1.43
CHMP2A-203ENST00000597209 U2AF1L5P0DN76 240 aaPredicted RBP23.98■■□□□ 1.43
CHMP2A-203ENST00000597209 U2AF1Q01081 240 aaKnown RBP eCLIP23.98■■□□□ 1.43
CHMP2A-203ENST00000597209 PELP1Q8IZL8 1130 aaKnown RBP23.98■■□□□ 1.43
CHMP2A-203ENST00000597209 C4AP0C0L4 1744 aa23.98■■□□□ 1.43
CHMP2A-203ENST00000597209 UBR2Q8IWV8 1755 aa23.98■■□□□ 1.43
CHMP2A-203ENST00000597209 CYP19A1P11511 503 aaPredicted RBP23.97■■□□□ 1.43
CHMP2A-203ENST00000597209 TEFQ10587 303 aa23.97■■□□□ 1.43
CHMP2A-203ENST00000597209 CEMIPQ8WUJ3 1361 aa23.97■■□□□ 1.43
CHMP2A-203ENST00000597209 CCDC87Q9NVE4 849 aa23.97■■□□□ 1.43
CHMP2A-203ENST00000597209 YBX3P16989 372 aaKnown RBP eCLIP23.96■■□□□ 1.434e-13■■□□□ 11.6
CHMP2A-203ENST00000597209 SIPA1L3O60292 1781 aaPredicted RBP23.96■■□□□ 1.43
CHMP2A-203ENST00000597209 TTC5Q8N0Z6 440 aa23.95■■□□□ 1.42
CHMP2A-203ENST00000597209 USP42Q9H9J4 1324 aaKnown RBP23.94■■□□□ 1.42
CHMP2A-203ENST00000597209 ZNF790Q6PG37 636 aa23.93■■□□□ 1.42
CHMP2A-203ENST00000597209 KIF13BQ9NQT8 1826 aa23.93■■□□□ 1.42
CHMP2A-203ENST00000597209 SOS1Q07889 1333 aaPredicted RBP23.92■■□□□ 1.42
CHMP2A-203ENST00000597209 PARP3Q9Y6F1 533 aa23.91■■□□□ 1.42
CHMP2A-203ENST00000597209 UTRNP46939 3433 aa23.91■■□□□ 1.42
CHMP2A-203ENST00000597209 HTATSF1O43719 755 aaKnown RBP23.9■■□□□ 1.42
CHMP2A-203ENST00000597209 TGFB2P61812 414 aa23.9■■□□□ 1.42
CHMP2A-203ENST00000597209 ZNF784Q8NCA9 323 aaPredicted RBP23.9■■□□□ 1.42
CHMP2A-203ENST00000597209 TEX13AQ9BXU3 409 aaPredicted RBP23.9■■□□□ 1.42
CHMP2A-203ENST00000597209 SRP68Q9UHB9 627 aaKnown RBP23.9■■□□□ 1.42
CHMP2A-203ENST00000597209 C10orf71Q711Q0 1435 aa23.9■■□□□ 1.42
CHMP2A-203ENST00000597209 STARD3NLO95772 234 aa23.89■■□□□ 1.41
CHMP2A-203ENST00000597209 ZNF496Q96IT1 587 aaPredicted RBP23.89■■□□□ 1.41
CHMP2A-203ENST00000597209 HEG1Q9ULI3 1381 aa23.89■■□□□ 1.41
CHMP2A-203ENST00000597209 FKBP8Q14318 412 aa23.88■■□□□ 1.41
CHMP2A-203ENST00000597209 RALBP1Q15311 655 aa23.88■■□□□ 1.41
CHMP2A-203ENST00000597209 RTF1Q92541 710 aaKnown RBP23.88■■□□□ 1.41
CHMP2A-203ENST00000597209 ZBTB1Q9Y2K1 713 aa23.88■■□□□ 1.41
CHMP2A-203ENST00000597209 ZPR1O75312 459 aa23.87■■□□□ 1.41
CHMP2A-203ENST00000597209 FMNL2Q96PY5 1086 aa23.87■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms