RNA–Protein interactions for RNA: ENST00000593764.5

SHKBP1-202, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 870 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-202ENST00000593764 COL23A1Q86Y22 540 aaPredicted RBP24.81■■□□□ 1.56
SHKBP1-202ENST00000593764 LINC00116Q8NCU8 138 aa24.81■■□□□ 1.56
SHKBP1-202ENST00000593764 PPP1R1BQ9UD71 204 aaPredicted RBP24.81■■□□□ 1.56
SHKBP1-202ENST00000593764 NUDCQ9Y266 331 aa24.81■■□□□ 1.56
SHKBP1-202ENST00000593764 RNMTO43148 476 aaKnown RBP24.8■■□□□ 1.56
SHKBP1-202ENST00000593764 ZEB1P37275 1124 aaPredicted RBP24.8■■□□□ 1.56
SHKBP1-202ENST00000593764 ATP6V1AP38606 617 aa24.8■■□□□ 1.56
SHKBP1-202ENST00000593764 RSPH6AQ9H0K4 717 aa24.8■■□□□ 1.56
SHKBP1-202ENST00000593764 SCN11AQ9UI33 1791 aa24.8■■□□□ 1.56
SHKBP1-202ENST00000593764 AMIGO3Q86WK7 504 aa24.79■■□□□ 1.56
SHKBP1-202ENST00000593764 C4BP0C0L5 1744 aa24.78■■□□□ 1.56
SHKBP1-202ENST00000593764 PHACTR3Q96KR7 559 aa24.78■■□□□ 1.56
SHKBP1-202ENST00000593764 SLC52A2Q9HAB3 445 aa24.78■■□□□ 1.56
SHKBP1-202ENST00000593764 U2AF1L5P0DN76 240 aaPredicted RBP24.77■■□□□ 1.56
SHKBP1-202ENST00000593764 PRKAR2BP31323 418 aa24.77■■□□□ 1.56
SHKBP1-202ENST00000593764 U2AF1Q01081 240 aaKnown RBP eCLIP24.77■■□□□ 1.56
SHKBP1-202ENST00000593764 RBM42Q9BTD8 480 aaKnown RBP24.77■■□□□ 1.56
SHKBP1-202ENST00000593764 AK7Q96M32 723 aa24.76■■□□□ 1.55
SHKBP1-202ENST00000593764 SMIM5Q71RC9 77 aa24.75■■□□□ 1.55
SHKBP1-202ENST00000593764 GAS2L2Q8NHY3 880 aa24.75■■□□□ 1.55
SHKBP1-202ENST00000593764 ADAMTS7Q9UKP4 1686 aa24.75■■□□□ 1.55
SHKBP1-202ENST00000593764 FCHSD2O94868 740 aa24.74■■□□□ 1.55
SHKBP1-202ENST00000593764 FLAD1Q8NFF5 587 aa24.74■■□□□ 1.55
SHKBP1-202ENST00000593764 MRC1P22897 1456 aa24.74■■□□□ 1.55
SHKBP1-202ENST00000593764 MSH5O43196 834 aa24.73■■□□□ 1.55
SHKBP1-202ENST00000593764 PTCD1O75127 700 aaKnown RBP24.73■■□□□ 1.55
SHKBP1-202ENST00000593764 RALBP1Q15311 655 aa24.73■■□□□ 1.55
SHKBP1-202ENST00000593764 IL17REQ8NFR9 667 aa24.73■■□□□ 1.55
SHKBP1-202ENST00000593764 ZNF831Q5JPB2 1677 aa24.72■■□□□ 1.55
SHKBP1-202ENST00000593764 GNAT3A8MTJ3 354 aa24.72■■□□□ 1.55
SHKBP1-202ENST00000593764 ARXQ96QS3 562 aa24.72■■□□□ 1.55
SHKBP1-202ENST00000593764 UBR3Q6ZT12 1888 aa24.72■■□□□ 1.55
SHKBP1-202ENST00000593764 COL24A1Q17RW2 1714 aa24.72■■□□□ 1.55
SHKBP1-202ENST00000593764 MAP3K5Q99683 1374 aa24.71■■□□□ 1.55
SHKBP1-202ENST00000593764 VIRMAQ69YN4 1812 aaKnown RBP24.71■■□□□ 1.55
SHKBP1-202ENST00000593764 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.7■■□□□ 1.54
SHKBP1-202ENST00000593764 FHDC1Q9C0D6 1143 aaPredicted RBP24.7■■□□□ 1.54
SHKBP1-202ENST00000593764 GNPATO15228 680 aa24.69■■□□□ 1.54
SHKBP1-202ENST00000593764 SSFA2P28290 1259 aa24.69■■□□□ 1.54
SHKBP1-202ENST00000593764 SLC39A6Q13433 755 aa24.69■■□□□ 1.54
SHKBP1-202ENST00000593764 RC3H1Q5TC82 1133 aaKnown RBP24.69■■□□□ 1.54
SHKBP1-202ENST00000593764 PHF14O94880 888 aa24.68■■□□□ 1.54
SHKBP1-202ENST00000593764 SYT17Q9BSW7 474 aa24.68■■□□□ 1.54
SHKBP1-202ENST00000593764 POLD1P28340 1107 aa24.66■■□□□ 1.54
SHKBP1-202ENST00000593764 MSL1Q68DK7 614 aa24.66■■□□□ 1.54
SHKBP1-202ENST00000593764 CEMIPQ8WUJ3 1361 aa24.66■■□□□ 1.54
SHKBP1-202ENST00000593764 CNTNAP4Q9C0A0 1308 aa24.65■■□□□ 1.54
SHKBP1-202ENST00000593764 COL5A3P25940 1745 aaPredicted RBP24.65■■□□□ 1.54
SHKBP1-202ENST00000593764 MYH14Q7Z406 1995 aaKnown RBP24.64■■□□□ 1.54
SHKBP1-202ENST00000593764 PLEKHF1Q96S99 279 aa24.64■■□□□ 1.54
SHKBP1-202ENST00000593764 TEFQ10587 303 aa24.63■■□□□ 1.53
SHKBP1-202ENST00000593764 RTCBQ9Y3I0 505 aaKnown RBP24.63■■□□□ 1.53
SHKBP1-202ENST00000593764 MYBBP1AQ9BQG0 1328 aaKnown RBP24.62■■□□□ 1.53
SHKBP1-202ENST00000593764 KCPQ6ZWJ8 1503 aa24.62■■□□□ 1.53
SHKBP1-202ENST00000593764 RPS6KA4O75676 772 aa24.62■■□□□ 1.53
SHKBP1-202ENST00000593764 CRKLP46109 303 aaKnown RBP24.62■■□□□ 1.53
SHKBP1-202ENST00000593764 DNAJC10Q8IXB1 793 aa24.61■■□□□ 1.53
SHKBP1-202ENST00000593764 TJP1Q07157 1748 aa24.61■■□□□ 1.53
SHKBP1-202ENST00000593764 CICQ96RK0 1608 aaPredicted RBP24.61■■□□□ 1.53
SHKBP1-202ENST00000593764 TRAPPC3LQ5T215 181 aa24.6■■□□□ 1.53
SHKBP1-202ENST00000593764 INTS5Q6P9B9 1019 aaKnown RBP24.6■■□□□ 1.53
SHKBP1-202ENST00000593764 ARHGEF1Q92888 912 aaKnown RBP24.6■■□□□ 1.53
SHKBP1-202ENST00000593764 PRKRIP1Q9H875 184 aaPredicted RBP24.59■■□□□ 1.53
SHKBP1-202ENST00000593764 SIPA1L3O60292 1781 aaPredicted RBP24.59■■□□□ 1.53
SHKBP1-202ENST00000593764 CYP19A1P11511 503 aaPredicted RBP24.58■■□□□ 1.53
SHKBP1-202ENST00000593764 ADRA2BP18089 450 aa24.58■■□□□ 1.53
SHKBP1-202ENST00000593764 ZNF790Q6PG37 636 aa24.58■■□□□ 1.53
SHKBP1-202ENST00000593764 MCM10Q7L590 875 aa24.58■■□□□ 1.53
SHKBP1-202ENST00000593764 VSIG10Q8N0Z9 540 aa24.58■■□□□ 1.53
SHKBP1-202ENST00000593764 UTRNP46939 3433 aa24.57■■□□□ 1.52
SHKBP1-202ENST00000593764 HTATSF1O43719 755 aaKnown RBP24.57■■□□□ 1.52
SHKBP1-202ENST00000593764 DCTN1Q14203 1278 aa24.57■■□□□ 1.52
SHKBP1-202ENST00000593764 RTF1Q92541 710 aaKnown RBP24.57■■□□□ 1.52
SHKBP1-202ENST00000593764 UBR2Q8IWV8 1755 aa24.57■■□□□ 1.52
SHKBP1-202ENST00000593764 TTC5Q8N0Z6 440 aa24.56■■□□□ 1.52
SHKBP1-202ENST00000593764 ZNF496Q96IT1 587 aaPredicted RBP24.56■■□□□ 1.52
SHKBP1-202ENST00000593764 BTBD11A6QL63 1104 aa24.54■■□□□ 1.52
SHKBP1-202ENST00000593764 KCNQ3O43525 872 aa24.54■■□□□ 1.52
SHKBP1-202ENST00000593764 KLHL34Q8N239 644 aa24.54■■□□□ 1.52
SHKBP1-202ENST00000593764 CCDC87Q9NVE4 849 aa24.54■■□□□ 1.52
SHKBP1-202ENST00000593764 GOLGB1Q14789 3259 aaKnown RBP24.54■■□□□ 1.52
SHKBP1-202ENST00000593764 NEFMP07197 916 aa24.53■■□□□ 1.52
SHKBP1-202ENST00000593764 RFC4P35249 363 aa24.53■■□□□ 1.52
SHKBP1-202ENST00000593764 NFE2L2Q16236 605 aa24.53■■□□□ 1.52
SHKBP1-202ENST00000593764 PNNQ9H307 717 aaKnown RBP24.53■■□□□ 1.52
SHKBP1-202ENST00000593764 NLGN2Q8NFZ4 835 aa24.52■■□□□ 1.52
SHKBP1-202ENST00000593764 HEG1Q9ULI3 1381 aa24.52■■□□□ 1.52
SHKBP1-202ENST00000593764 ZNF316A6NFI3 1004 aaPredicted RBP24.51■■□□□ 1.51
SHKBP1-202ENST00000593764 GYS1P13807 737 aa24.51■■□□□ 1.51
SHKBP1-202ENST00000593764 NLGN1Q8N2Q7 840 aa24.5■■□□□ 1.51
SHKBP1-202ENST00000593764 ZBTB1Q9Y2K1 713 aa24.5■■□□□ 1.51
SHKBP1-202ENST00000593764 SOS1Q07889 1333 aaPredicted RBP24.5■■□□□ 1.51
SHKBP1-202ENST00000593764 DCAF8L1A6NGE4 600 aa24.49■■□□□ 1.51
SHKBP1-202ENST00000593764 FMNL2Q96PY5 1086 aa24.49■■□□□ 1.51
SHKBP1-202ENST00000593764 SRP68Q9UHB9 627 aaKnown RBP24.49■■□□□ 1.51
SHKBP1-202ENST00000593764 DLG5Q8TDM6 1919 aa24.49■■□□□ 1.51
SHKBP1-202ENST00000593764 MMP10P09238 476 aa24.48■■□□□ 1.51
SHKBP1-202ENST00000593764 C4AP0C0L4 1744 aa24.48■■□□□ 1.51
SHKBP1-202ENST00000593764 TAF7Q15545 349 aaPredicted RBP24.48■■□□□ 1.51
SHKBP1-202ENST00000593764 MAPK8IP3Q9UPT6 1336 aa24.48■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 343.6 ms