RNA–Protein interactions for RNA: ENST00000591914.5

SMAD4-213, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 992 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-213ENST00000591914 ADAMTS7Q9UKP4 1686 aa36.54■■■■□ 3.44
SMAD4-213ENST00000591914 DDX10Q13206 875 aaKnown RBP36.53■■■■□ 3.44
SMAD4-213ENST00000591914 ZNF831Q5JPB2 1677 aa36.53■■■■□ 3.44
SMAD4-213ENST00000591914 NFATC2IPQ8NCF5 419 aa36.52■■■■□ 3.44
SMAD4-213ENST00000591914 MRC1P22897 1456 aa36.51■■■■□ 3.44
SMAD4-213ENST00000591914 ITPK1Q13572 414 aa36.5■■■■□ 3.43
SMAD4-213ENST00000591914 RSPH6AQ9H0K4 717 aa36.5■■■■□ 3.43
SMAD4-213ENST00000591914 LGR6Q9HBX8 967 aa36.5■■■■□ 3.43
SMAD4-213ENST00000591914 VIRMAQ69YN4 1812 aaKnown RBP36.5■■■■□ 3.43
SMAD4-213ENST00000591914 COL24A1Q17RW2 1714 aa36.49■■■■□ 3.43
SMAD4-213ENST00000591914 ATP6V1AP38606 617 aa36.49■■■■□ 3.43
SMAD4-213ENST00000591914 LINC00116Q8NCU8 138 aa36.49■■■■□ 3.43
SMAD4-213ENST00000591914 RNMTO43148 476 aaKnown RBP36.48■■■■□ 3.43
SMAD4-213ENST00000591914 COL23A1Q86Y22 540 aaPredicted RBP36.48■■■■□ 3.43
SMAD4-213ENST00000591914 AK7Q96M32 723 aa36.47■■■■□ 3.43
SMAD4-213ENST00000591914 SLC52A2Q9HAB3 445 aa36.47■■■■□ 3.43
SMAD4-213ENST00000591914 UBR3Q6ZT12 1888 aa36.46■■■■□ 3.43
SMAD4-213ENST00000591914 U2AF1L5P0DN76 240 aaPredicted RBP36.46■■■■□ 3.43
SMAD4-213ENST00000591914 PRKAR2BP31323 418 aa36.46■■■■□ 3.43
SMAD4-213ENST00000591914 U2AF1Q01081 240 aaKnown RBP eCLIP36.46■■■■□ 3.43
SMAD4-213ENST00000591914 GAS2L2Q8NHY3 880 aa36.46■■■■□ 3.43
SMAD4-213ENST00000591914 SLC4A9Q96Q91 983 aa36.46■■■■□ 3.43
SMAD4-213ENST00000591914 FLAD1Q8NFF5 587 aa36.45■■■■□ 3.43
SMAD4-213ENST00000591914 RBM42Q9BTD8 480 aaKnown RBP36.44■■■■□ 3.42
SMAD4-213ENST00000591914 MAP3K5Q99683 1374 aa36.43■■■■□ 3.42
SMAD4-213ENST00000591914 RALBP1Q15311 655 aa36.43■■■■□ 3.42
SMAD4-213ENST00000591914 PHACTR3Q96KR7 559 aa36.43■■■■□ 3.42
SMAD4-213ENST00000591914 AMIGO3Q86WK7 504 aa36.42■■■■□ 3.42
SMAD4-213ENST00000591914 FCHSD2O94868 740 aa36.41■■■■□ 3.42
SMAD4-213ENST00000591914 COL5A3P25940 1745 aaPredicted RBP36.41■■■■□ 3.42
SMAD4-213ENST00000591914 MSH5O43196 834 aa36.4■■■■□ 3.42
SMAD4-213ENST00000591914 GNAT3A8MTJ3 354 aa36.39■■■■□ 3.42
SMAD4-213ENST00000591914 CICQ96RK0 1608 aaPredicted RBP36.38■■■■□ 3.41
SMAD4-213ENST00000591914 PTCD1O75127 700 aaKnown RBP36.38■■■■□ 3.41
SMAD4-213ENST00000591914 ARXQ96QS3 562 aa36.38■■■■□ 3.41
SMAD4-213ENST00000591914 SSFA2P28290 1259 aa36.37■■■■□ 3.41
SMAD4-213ENST00000591914 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP36.36■■■■□ 3.41
SMAD4-213ENST00000591914 GNPATO15228 680 aa36.35■■■■□ 3.41
SMAD4-213ENST00000591914 IL17REQ8NFR9 667 aa36.35■■■■□ 3.41
SMAD4-213ENST00000591914 POLD1P28340 1107 aa36.34■■■■□ 3.41
SMAD4-213ENST00000591914 PHF14O94880 888 aa36.33■■■■□ 3.41
SMAD4-213ENST00000591914 RC3H1Q5TC82 1133 aaKnown RBP36.33■■■■□ 3.41
SMAD4-213ENST00000591914 SMIM5Q71RC9 77 aa36.33■■■■□ 3.41
SMAD4-213ENST00000591914 FHDC1Q9C0D6 1143 aaPredicted RBP36.33■■■■□ 3.41
SMAD4-213ENST00000591914 TJP1Q07157 1748 aa36.33■■■■□ 3.41
SMAD4-213ENST00000591914 CNTNAP4Q9C0A0 1308 aa36.33■■■■□ 3.41
SMAD4-213ENST00000591914 CEMIPQ8WUJ3 1361 aa36.31■■■■□ 3.4
SMAD4-213ENST00000591914 SIPA1L3O60292 1781 aaPredicted RBP36.3■■■■□ 3.4
SMAD4-213ENST00000591914 KCPQ6ZWJ8 1503 aa36.3■■■■□ 3.4
SMAD4-213ENST00000591914 SLC39A6Q13433 755 aa36.3■■■■□ 3.4
SMAD4-213ENST00000591914 SYT17Q9BSW7 474 aa36.29■■■■□ 3.4
SMAD4-213ENST00000591914 MSL1Q68DK7 614 aa36.28■■■■□ 3.4
SMAD4-213ENST00000591914 MYBBP1AQ9BQG0 1328 aaKnown RBP36.28■■■■□ 3.4
SMAD4-213ENST00000591914 UBR2Q8IWV8 1755 aa36.27■■■■□ 3.4
SMAD4-213ENST00000591914 MYH14Q7Z406 1995 aaKnown RBP36.27■■■■□ 3.4
SMAD4-213ENST00000591914 TEFQ10587 303 aa36.27■■■■□ 3.4
SMAD4-213ENST00000591914 RTCBQ9Y3I0 505 aaKnown RBP36.26■■■■□ 3.4
SMAD4-213ENST00000591914 RPS6KA4O75676 772 aa36.23■■■■□ 3.39
SMAD4-213ENST00000591914 CRKLP46109 303 aaKnown RBP36.23■■■■□ 3.39
SMAD4-213ENST00000591914 ADRA2BP18089 450 aa36.22■■■■□ 3.39
SMAD4-213ENST00000591914 PLEKHF1Q96S99 279 aa36.22■■■■□ 3.39
SMAD4-213ENST00000591914 DNAJC10Q8IXB1 793 aa36.21■■■■□ 3.39
SMAD4-213ENST00000591914 TRAPPC3LQ5T215 181 aa36.2■■■■□ 3.39
SMAD4-213ENST00000591914 VSIG10Q8N0Z9 540 aa36.2■■■■□ 3.39
SMAD4-213ENST00000591914 HTATSF1O43719 755 aaKnown RBP36.19■■■■□ 3.38
SMAD4-213ENST00000591914 RTF1Q92541 710 aaKnown RBP36.19■■■■□ 3.38
SMAD4-213ENST00000591914 NEFMP07197 916 aa36.18■■■■□ 3.38
SMAD4-213ENST00000591914 ZNF790Q6PG37 636 aa36.18■■■■□ 3.38
SMAD4-213ENST00000591914 TTC5Q8N0Z6 440 aa36.18■■■■□ 3.38
SMAD4-213ENST00000591914 PRKRIP1Q9H875 184 aaPredicted RBP36.18■■■■□ 3.38
SMAD4-213ENST00000591914 INTS5Q6P9B9 1019 aaKnown RBP36.17■■■■□ 3.38
SMAD4-213ENST00000591914 ARHGEF1Q92888 912 aaKnown RBP36.17■■■■□ 3.38
SMAD4-213ENST00000591914 MCM10Q7L590 875 aa36.16■■■■□ 3.38
SMAD4-213ENST00000591914 PNNQ9H307 717 aaKnown RBP36.16■■■■□ 3.38
SMAD4-213ENST00000591914 C4AP0C0L4 1744 aa36.16■■■■□ 3.38
SMAD4-213ENST00000591914 CYP19A1P11511 503 aaPredicted RBP36.15■■■■□ 3.38
SMAD4-213ENST00000591914 CCDC87Q9NVE4 849 aa36.14■■■■□ 3.38
SMAD4-213ENST00000591914 DLG5Q8TDM6 1919 aa36.14■■■■□ 3.38
SMAD4-213ENST00000591914 ZNF496Q96IT1 587 aaPredicted RBP36.13■■■■□ 3.37
SMAD4-213ENST00000591914 DCAF8L1A6NGE4 600 aa36.12■■■■□ 3.37
SMAD4-213ENST00000591914 KLHL34Q8N239 644 aa36.12■■■■□ 3.37
SMAD4-213ENST00000591914 BTBD11A6QL63 1104 aa36.11■■■■□ 3.37
SMAD4-213ENST00000591914 RFC4P35249 363 aa36.11■■■■□ 3.37
SMAD4-213ENST00000591914 DCTN1Q14203 1278 aa36.11■■■■□ 3.37
SMAD4-213ENST00000591914 HEG1Q9ULI3 1381 aa36.11■■■■□ 3.37
SMAD4-213ENST00000591914 NFE2L2Q16236 605 aa36.1■■■■□ 3.37
SMAD4-213ENST00000591914 MAPK8IP3Q9UPT6 1336 aa36.08■■■■□ 3.37
SMAD4-213ENST00000591914 ZNF316A6NFI3 1004 aaPredicted RBP36.07■■■■□ 3.36
SMAD4-213ENST00000591914 GYS1P13807 737 aa36.07■■■■□ 3.36
SMAD4-213ENST00000591914 NLGN1Q8N2Q7 840 aa36.07■■■■□ 3.36
SMAD4-213ENST00000591914 FMNL2Q96PY5 1086 aa36.07■■■■□ 3.36
SMAD4-213ENST00000591914 SOS1Q07889 1333 aaPredicted RBP36.07■■■■□ 3.36
SMAD4-213ENST00000591914 KCNQ3O43525 872 aa36.06■■■■□ 3.36
SMAD4-213ENST00000591914 NLGN2Q8NFZ4 835 aa36.06■■■■□ 3.36
SMAD4-213ENST00000591914 CD2APQ9Y5K6 639 aa36.05■■■■□ 3.36
SMAD4-213ENST00000591914 STARD3NLO95772 234 aa36.04■■■■□ 3.36
SMAD4-213ENST00000591914 TEX13AQ9BXU3 409 aaPredicted RBP36.04■■■■□ 3.36
SMAD4-213ENST00000591914 ZBTB1Q9Y2K1 713 aa36.04■■■■□ 3.36
SMAD4-213ENST00000591914 USP42Q9H9J4 1324 aaKnown RBP36.04■■■■□ 3.36
SMAD4-213ENST00000591914 MMP10P09238 476 aa36.03■■■■□ 3.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms