RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 ATP6V1AP38606 617 aa32.03■■■□□ 2.72
SHMT1-206ENST00000579558 NFATC2IPQ8NCF5 419 aa32.02■■■□□ 2.72
SHMT1-206ENST00000579558 AK7Q96M32 723 aa32.02■■■□□ 2.72
SHMT1-206ENST00000579558 MSH5O43196 834 aa32.01■■■□□ 2.71
SHMT1-206ENST00000579558 VIRMAQ69YN4 1812 aaKnown RBP32■■■□□ 2.71
SHMT1-206ENST00000579558 RNMTO43148 476 aaKnown RBP32■■■□□ 2.71
SHMT1-206ENST00000579558 ITPK1Q13572 414 aa32■■■□□ 2.71
SHMT1-206ENST00000579558 COL23A1Q86Y22 540 aaPredicted RBP32■■■□□ 2.71
SHMT1-206ENST00000579558 LINC00116Q8NCU8 138 aa32■■■□□ 2.71
SHMT1-206ENST00000579558 SGIP1Q9BQI5 828 aa32■■■□□ 2.71
SHMT1-206ENST00000579558 RBM42Q9BTD8 480 aaKnown RBP32■■■□□ 2.71
SHMT1-206ENST00000579558 LGR6Q9HBX8 967 aa32■■■□□ 2.71
SHMT1-206ENST00000579558 U2AF1L5P0DN76 240 aaPredicted RBP31.99■■■□□ 2.71
SHMT1-206ENST00000579558 U2AF1Q01081 240 aaKnown RBP eCLIP31.99■■■□□ 2.71
SHMT1-206ENST00000579558 PRKAR2BP31323 418 aa31.98■■■□□ 2.71
SHMT1-206ENST00000579558 GAS2L2Q8NHY3 880 aa31.98■■■□□ 2.71
SHMT1-206ENST00000579558 RSPH6AQ9H0K4 717 aa31.98■■■□□ 2.71
SHMT1-206ENST00000579558 ZNF831Q5JPB2 1677 aa31.97■■■□□ 2.71
SHMT1-206ENST00000579558 FLAD1Q8NFF5 587 aa31.97■■■□□ 2.71
SHMT1-206ENST00000579558 SLC52A2Q9HAB3 445 aa31.97■■■□□ 2.71
SHMT1-206ENST00000579558 MRC1P22897 1456 aa31.97■■■□□ 2.71
SHMT1-206ENST00000579558 ADAMTS7Q9UKP4 1686 aa31.96■■■□□ 2.71
SHMT1-206ENST00000579558 UBR3Q6ZT12 1888 aa31.95■■■□□ 2.71
SHMT1-206ENST00000579558 SLC4A9Q96Q91 983 aa31.95■■■□□ 2.71
SHMT1-206ENST00000579558 MAP3K5Q99683 1374 aa31.94■■■□□ 2.7
SHMT1-206ENST00000579558 COL24A1Q17RW2 1714 aa31.94■■■□□ 2.7
SHMT1-206ENST00000579558 PTCD1O75127 700 aaKnown RBP31.93■■■□□ 2.7
SHMT1-206ENST00000579558 ARXQ96QS3 562 aa31.93■■■□□ 2.7
SHMT1-206ENST00000579558 PHF14O94880 888 aa31.92■■■□□ 2.7
SHMT1-206ENST00000579558 POLD1P28340 1107 aa31.92■■■□□ 2.7
SHMT1-206ENST00000579558 RALBP1Q15311 655 aa31.92■■■□□ 2.7
SHMT1-206ENST00000579558 PHACTR3Q96KR7 559 aa31.92■■■□□ 2.7
SHMT1-206ENST00000579558 GNAT3A8MTJ3 354 aa31.91■■■□□ 2.7
SHMT1-206ENST00000579558 AMIGO3Q86WK7 504 aa31.91■■■□□ 2.7
SHMT1-206ENST00000579558 GNPATO15228 680 aa31.9■■■□□ 2.7
SHMT1-206ENST00000579558 FCHSD2O94868 740 aa31.9■■■□□ 2.7
SHMT1-206ENST00000579558 COL5A3P25940 1745 aaPredicted RBP31.89■■■□□ 2.7
SHMT1-206ENST00000579558 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP31.89■■■□□ 2.7
SHMT1-206ENST00000579558 SSFA2P28290 1259 aa31.89■■■□□ 2.7
SHMT1-206ENST00000579558 SMIM5Q71RC9 77 aa31.89■■■□□ 2.7
SHMT1-206ENST00000579558 FHDC1Q9C0D6 1143 aaPredicted RBP31.88■■■□□ 2.69
SHMT1-206ENST00000579558 MSL1Q68DK7 614 aa31.87■■■□□ 2.69
SHMT1-206ENST00000579558 SLC39A6Q13433 755 aa31.85■■■□□ 2.69
SHMT1-206ENST00000579558 IL17REQ8NFR9 667 aa31.85■■■□□ 2.69
SHMT1-206ENST00000579558 CNTNAP4Q9C0A0 1308 aa31.84■■■□□ 2.69
SHMT1-206ENST00000579558 RC3H1Q5TC82 1133 aaKnown RBP31.84■■■□□ 2.69
SHMT1-206ENST00000579558 TJP1Q07157 1748 aa31.83■■■□□ 2.69
SHMT1-206ENST00000579558 CICQ96RK0 1608 aaPredicted RBP31.83■■■□□ 2.69
SHMT1-206ENST00000579558 TEFQ10587 303 aa31.83■■■□□ 2.69
SHMT1-206ENST00000579558 SYT17Q9BSW7 474 aa31.83■■■□□ 2.69
SHMT1-206ENST00000579558 RTCBQ9Y3I0 505 aaKnown RBP31.82■■■□□ 2.68
SHMT1-206ENST00000579558 KCPQ6ZWJ8 1503 aa31.8■■■□□ 2.68
SHMT1-206ENST00000579558 MYBBP1AQ9BQG0 1328 aaKnown RBP31.8■■■□□ 2.68
SHMT1-206ENST00000579558 KLHL34Q8N239 644 aa31.8■■■□□ 2.68
SHMT1-206ENST00000579558 MYH14Q7Z406 1995 aaKnown RBP31.79■■■□□ 2.68
SHMT1-206ENST00000579558 CEMIPQ8WUJ3 1361 aa31.79■■■□□ 2.68
SHMT1-206ENST00000579558 SIPA1L3O60292 1781 aaPredicted RBP31.79■■■□□ 2.68
SHMT1-206ENST00000579558 NEFMP07197 916 aa31.78■■■□□ 2.68
SHMT1-206ENST00000579558 CRKLP46109 303 aaKnown RBP31.78■■■□□ 2.68
SHMT1-206ENST00000579558 UBR2Q8IWV8 1755 aa31.77■■■□□ 2.68
SHMT1-206ENST00000579558 DCAF8L1A6NGE4 600 aa31.77■■■□□ 2.68
SHMT1-206ENST00000579558 RPS6KA4O75676 772 aa31.77■■■□□ 2.68
SHMT1-206ENST00000579558 TRAPPC3LQ5T215 181 aa31.77■■■□□ 2.68
SHMT1-206ENST00000579558 TTC5Q8N0Z6 440 aa31.77■■■□□ 2.68
SHMT1-206ENST00000579558 RTF1Q92541 710 aaKnown RBP31.77■■■□□ 2.68
SHMT1-206ENST00000579558 DNAJC10Q8IXB1 793 aa31.76■■■□□ 2.67
SHMT1-206ENST00000579558 ADRA2BP18089 450 aa31.75■■■□□ 2.67
SHMT1-206ENST00000579558 MCM10Q7L590 875 aa31.72■■■□□ 2.67
SHMT1-206ENST00000579558 VSIG10Q8N0Z9 540 aa31.72■■■□□ 2.67
SHMT1-206ENST00000579558 ARHGEF1Q92888 912 aaKnown RBP31.72■■■□□ 2.67
SHMT1-206ENST00000579558 PLEKHF1Q96S99 279 aa31.72■■■□□ 2.67
SHMT1-206ENST00000579558 PNNQ9H307 717 aaKnown RBP31.72■■■□□ 2.67
SHMT1-206ENST00000579558 ZNF790Q6PG37 636 aa31.71■■■□□ 2.67
SHMT1-206ENST00000579558 HTATSF1O43719 755 aaKnown RBP31.7■■■□□ 2.67
SHMT1-206ENST00000579558 INTS5Q6P9B9 1019 aaKnown RBP31.7■■■□□ 2.67
SHMT1-206ENST00000579558 CCDC87Q9NVE4 849 aa31.7■■■□□ 2.67
SHMT1-206ENST00000579558 C4AP0C0L4 1744 aa31.69■■■□□ 2.66
SHMT1-206ENST00000579558 CYP19A1P11511 503 aaPredicted RBP31.69■■■□□ 2.66
SHMT1-206ENST00000579558 RFC4P35249 363 aa31.69■■■□□ 2.66
SHMT1-206ENST00000579558 MAPK8IP3Q9UPT6 1336 aa31.69■■■□□ 2.66
SHMT1-206ENST00000579558 BTBD11A6QL63 1104 aa31.68■■■□□ 2.66
SHMT1-206ENST00000579558 DCTN1Q14203 1278 aa31.68■■■□□ 2.66
SHMT1-206ENST00000579558 ZNF496Q96IT1 587 aaPredicted RBP31.68■■■□□ 2.66
SHMT1-206ENST00000579558 PRKRIP1Q9H875 184 aaPredicted RBP31.68■■■□□ 2.66
SHMT1-206ENST00000579558 DLG5Q8TDM6 1919 aa31.67■■■□□ 2.66
SHMT1-206ENST00000579558 HEG1Q9ULI3 1381 aa31.66■■■□□ 2.66
SHMT1-206ENST00000579558 NFE2L2Q16236 605 aa31.65■■■□□ 2.66
SHMT1-206ENST00000579558 NLGN2Q8NFZ4 835 aa31.65■■■□□ 2.66
SHMT1-206ENST00000579558 FMNL2Q96PY5 1086 aa31.64■■■□□ 2.66
SHMT1-206ENST00000579558 NLGN1Q8N2Q7 840 aa31.63■■■□□ 2.65
SHMT1-206ENST00000579558 ZNF316A6NFI3 1004 aaPredicted RBP31.62■■■□□ 2.65
SHMT1-206ENST00000579558 KCNQ3O43525 872 aa31.62■■■□□ 2.65
SHMT1-206ENST00000579558 MMP10P09238 476 aa31.62■■■□□ 2.65
SHMT1-206ENST00000579558 GYS1P13807 737 aa31.62■■■□□ 2.65
SHMT1-206ENST00000579558 SOS1Q07889 1333 aaPredicted RBP31.62■■■□□ 2.65
SHMT1-206ENST00000579558 ZBTB1Q9Y2K1 713 aa31.62■■■□□ 2.65
SHMT1-206ENST00000579558 STARD3NLO95772 234 aa31.61■■■□□ 2.65
SHMT1-206ENST00000579558 CD2APQ9Y5K6 639 aa31.61■■■□□ 2.65
SHMT1-206ENST00000579558 TEX13AQ9BXU3 409 aaPredicted RBP31.6■■■□□ 2.65
SHMT1-206ENST00000579558 SRP68Q9UHB9 627 aaKnown RBP31.6■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms