RNA–Protein interactions for RNA: ENST00000578049.3

SEC22B-201, Transcript of SEC22 homolog B, vesicle trafficking protein (gene/pseudogene), humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SEC22B, Length 6,922 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC22B-201ENST00000578049 LRSAM1Q6UWE0 723 aa12.53□□□□□ -0.4
SEC22B-201ENST00000578049 PYM1Q9BRP8 204 aaKnown RBP12.53□□□□□ -0.4
SEC22B-201ENST00000578049 EIF5P55010 431 aaKnown RBP12.53□□□□□ -0.4
SEC22B-201ENST00000578049 KIAA1328Q86T90 577 aa12.53□□□□□ -0.4
SEC22B-201ENST00000578049 STX1AQ16623 288 aa12.52□□□□□ -0.4
SEC22B-201ENST00000578049 UBAC1Q9BSL1 405 aa12.52□□□□□ -0.4
SEC22B-201ENST00000578049 CNNM1Q9NRU3 951 aa12.52□□□□□ -0.4
SEC22B-201ENST00000578049 HSP90AB3PQ58FF7 597 aa12.52□□□□□ -0.4
SEC22B-201ENST00000578049 USP25Q9UHP3 1055 aa12.52□□□□□ -0.4
SEC22B-201ENST00000578049 PRG4Q92954 1404 aaPredicted RBP12.52□□□□□ -0.4
SEC22B-201ENST00000578049 SPA17Q15506 151 aa12.52□□□□□ -0.41
SEC22B-201ENST00000578049 SEPT7Q16181 437 aaKnown RBP12.51□□□□□ -0.41
SEC22B-201ENST00000578049 C20orf194Q5TEA3 1177 aa12.51□□□□□ -0.41
SEC22B-201ENST00000578049 SPG7Q9UQ90 795 aa12.51□□□□□ -0.41
SEC22B-201ENST00000578049 URI1O94763 535 aaPredicted RBP12.51□□□□□ -0.41
SEC22B-201ENST00000578049 OSCARQ8IYS5 282 aa12.51□□□□□ -0.41
SEC22B-201ENST00000578049 FAM177A1Q8N128 213 aaPredicted RBP12.51□□□□□ -0.41
SEC22B-201ENST00000578049 LRRFIP2Q9Y608 721 aaKnown RBP12.51□□□□□ -0.41
SEC22B-201ENST00000578049 CCDC61Q9Y6R9 512 aa12.51□□□□□ -0.41
SEC22B-201ENST00000578049 ATF3P18847 181 aa12.51□□□□□ -0.41
SEC22B-201ENST00000578049 IFT140Q96RY7 1462 aa12.51□□□□□ -0.41
SEC22B-201ENST00000578049 FGFR1OPO95684 399 aaKnown RBP12.51□□□□□ -0.41
SEC22B-201ENST00000578049 KIF4BQ2VIQ3 1234 aa12.51□□□□□ -0.41
SEC22B-201ENST00000578049 HMG20BQ9P0W2 317 aa12.51□□□□□ -0.41
SEC22B-201ENST00000578049 CASQ1P31415 396 aa12.51□□□□□ -0.41
SEC22B-201ENST00000578049 SRRTQ9BXP5 876 aaKnown RBP12.51□□□□□ -0.41
SEC22B-201ENST00000578049 AKAP2Q9Y2D5 859 aa12.51□□□□□ -0.41
SEC22B-201ENST00000578049 STX6O43752 255 aa12.5□□□□□ -0.41
SEC22B-201ENST00000578049 IL1RAPL2Q9NP60 686 aa12.5□□□□□ -0.41
SEC22B-201ENST00000578049 RALGAPBQ86X10 1494 aa12.5□□□□□ -0.41
SEC22B-201ENST00000578049 NEFHP12036 1026 aa12.5□□□□□ -0.41
SEC22B-201ENST00000578049 MPNDQ8N594 471 aa12.5□□□□□ -0.41
SEC22B-201ENST00000578049 EXOC6BQ9Y2D4 811 aa12.5□□□□□ -0.41
SEC22B-201ENST00000578049 ZKSCAN5Q9Y2L8 839 aa12.5□□□□□ -0.41
SEC22B-201ENST00000578049 ADCY5O95622 1261 aa12.5□□□□□ -0.41
SEC22B-201ENST00000578049 TRIM27P14373 513 aa12.5□□□□□ -0.41
SEC22B-201ENST00000578049 PAFAH1B1P43034 410 aa12.5□□□□□ -0.41
SEC22B-201ENST00000578049 KRT222Q8N1A0 295 aa12.5□□□□□ -0.41
SEC22B-201ENST00000578049 GIMAP7Q8NHV1 300 aa12.5□□□□□ -0.41
SEC22B-201ENST00000578049 ZSCAN16Q9H4T2 348 aaPredicted RBP12.5□□□□□ -0.41
SEC22B-201ENST00000578049 KIAA0586Q9BVV6 1533 aa12.49□□□□□ -0.41
SEC22B-201ENST00000578049 USO1O60763 962 aaKnown RBP12.49□□□□□ -0.41
SEC22B-201ENST00000578049 KIF20AO95235 890 aa12.49□□□□□ -0.41
SEC22B-201ENST00000578049 ZNF165P49910 485 aa12.49□□□□□ -0.41
SEC22B-201ENST00000578049 CBX1P83916 185 aa12.49□□□□□ -0.41
SEC22B-201ENST00000578049 BCL11BQ9C0K0 894 aaPredicted RBP12.49□□□□□ -0.41
SEC22B-201ENST00000578049 FKBP15Q5T1M5 1219 aa12.49□□□□□ -0.41
SEC22B-201ENST00000578049 LARP1Q6PKG0 1096 aaKnown RBP12.49□□□□□ -0.41
SEC22B-201ENST00000578049 TBC1D9Q6ZT07 1266 aa12.49□□□□□ -0.41
SEC22B-201ENST00000578049 EHBP1Q8NDI1 1231 aa12.49□□□□□ -0.41
SEC22B-201ENST00000578049 TANGO6Q9C0B7 1094 aa12.49□□□□□ -0.41
SEC22B-201ENST00000578049 CETN2P41208 172 aa12.49□□□□□ -0.41
SEC22B-201ENST00000578049 VPS36Q86VN1 386 aa12.49□□□□□ -0.41
SEC22B-201ENST00000578049 C8orf76Q96K31 380 aa12.49□□□□□ -0.41
SEC22B-201ENST00000578049 GNAT3A8MTJ3 354 aa12.49□□□□□ -0.41
SEC22B-201ENST00000578049 PRPF40BQ6NWY9 871 aaKnown RBP12.49□□□□□ -0.41
SEC22B-201ENST00000578049 KANK3Q6NY19 840 aa12.49□□□□□ -0.41
SEC22B-201ENST00000578049 SCAF11Q99590 1463 aaKnown RBP12.49□□□□□ -0.41
SEC22B-201ENST00000578049 FERMT3Q86UX7 667 aa12.49□□□□□ -0.41
SEC22B-201ENST00000578049 SLC26A8Q96RN1 970 aa12.49□□□□□ -0.41
SEC22B-201ENST00000578049 NAA15Q9BXJ9 866 aaKnown RBP12.49□□□□□ -0.41
SEC22B-201ENST00000578049 ERICH4A6NGS2 130 aa12.48□□□□□ -0.41
SEC22B-201ENST00000578049 TUBBP07437 444 aa12.48□□□□□ -0.41
SEC22B-201ENST00000578049 PPP1R12BO60237 982 aaPredicted RBP12.48□□□□□ -0.41
SEC22B-201ENST00000578049 YEATS4O95619 227 aa12.48□□□□□ -0.41
SEC22B-201ENST00000578049 PTPN23Q9H3S7 1636 aa12.48□□□□□ -0.41
SEC22B-201ENST00000578049 XRCC6P12956 609 aaKnown RBP eCLIP12.48□□□□□ -0.41
SEC22B-201ENST00000578049 EVI5LQ96CN4 794 aa12.48□□□□□ -0.41
SEC22B-201ENST00000578049 FYB1O15117 783 aa12.48□□□□□ -0.41
SEC22B-201ENST00000578049 FAM200AQ8TCP9 573 aa12.47□□□□□ -0.41
SEC22B-201ENST00000578049 SMARCC1Q92922 1105 aaPredicted RBP12.47□□□□□ -0.41
SEC22B-201ENST00000578049 TOPBP1Q92547 1522 aa12.47□□□□□ -0.41
SEC22B-201ENST00000578049 RBM25P49756 843 aaKnown RBP12.47□□□□□ -0.41
SEC22B-201ENST00000578049 SNW1Q13573 536 aaKnown RBP12.47□□□□□ -0.41
SEC22B-201ENST00000578049 SYTL4Q96C24 671 aaPredicted RBP12.47□□□□□ -0.41
SEC22B-201ENST00000578049 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.47□□□□□ -0.411e-6■■■■■ 60.6
SEC22B-201ENST00000578049 ZSCAN23Q3MJ62 389 aa12.47□□□□□ -0.41
SEC22B-201ENST00000578049 TTC22Q5TAA0 569 aa12.47□□□□□ -0.41
SEC22B-201ENST00000578049 TIGD1Q96MW7 591 aa12.47□□□□□ -0.41
SEC22B-201ENST00000578049 GTPBP4Q9BZE4 634 aaKnown RBP12.47□□□□□ -0.41
SEC22B-201ENST00000578049 ZNF287Q9HBT7 754 aa12.47□□□□□ -0.41
SEC22B-201ENST00000578049 ABCC5O15440 1437 aa12.47□□□□□ -0.41
SEC22B-201ENST00000578049 IVLP07476 585 aa12.46□□□□□ -0.41
SEC22B-201ENST00000578049 C16orf45Q96MC5 204 aaPredicted RBP12.46□□□□□ -0.41
SEC22B-201ENST00000578049 SIL1Q9H173 461 aa12.46□□□□□ -0.41
SEC22B-201ENST00000578049 ECHDC1Q9NTX5 307 aa12.46□□□□□ -0.41
SEC22B-201ENST00000578049 ENOX2Q16206 610 aaKnown RBP12.46□□□□□ -0.41
SEC22B-201ENST00000578049 CAMK4Q16566 473 aa12.46□□□□□ -0.41
SEC22B-201ENST00000578049 SMC5Q8IY18 1101 aa12.46□□□□□ -0.41
SEC22B-201ENST00000578049 GOLGA6L10A0A0M3HER8 536 aa12.46□□□□□ -0.41
SEC22B-201ENST00000578049 TDO2P48775 406 aa12.46□□□□□ -0.41
SEC22B-201ENST00000578049 NUCB1Q02818 461 aa12.46□□□□□ -0.41
SEC22B-201ENST00000578049 PPP4R3BQ5MIZ7 849 aa12.46□□□□□ -0.41
SEC22B-201ENST00000578049 THEMISQ8N1K5 641 aaPredicted RBP12.46□□□□□ -0.42
SEC22B-201ENST00000578049 KCNH5Q8NCM2 988 aa12.46□□□□□ -0.42
SEC22B-201ENST00000578049 NUP133Q8WUM0 1156 aa12.46□□□□□ -0.42
SEC22B-201ENST00000578049 RAB34Q9BZG1 259 aa12.46□□□□□ -0.42
SEC22B-201ENST00000578049 CENPHQ9H3R5 247 aa12.46□□□□□ -0.42
SEC22B-201ENST00000578049 HMGB2P26583 209 aaKnown RBP12.45□□□□□ -0.42
SEC22B-201ENST00000578049 TXNDC2Q86VQ3 553 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms