RNA–Protein interactions for RNA: ENST00000573994.1

RPA1-206, Transcript of replication protein A1, humanhuman

TSL 2

Gene RPA1, Length 844 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPA1-206ENST00000573994 PPP1R1BQ9UD71 204 aaPredicted RBP13.62□□□□□ -0.23
RPA1-206ENST00000573994 IGSF1Q8N6C5 1336 aa13.62□□□□□ -0.23
RPA1-206ENST00000573994 ZBTB47Q9UFB7 747 aaPredicted RBP13.61□□□□□ -0.23
RPA1-206ENST00000573994 SPG7Q9UQ90 795 aa13.61□□□□□ -0.23
RPA1-206ENST00000573994 SLC27A3Q5K4L6 730 aa13.6□□□□□ -0.23
RPA1-206ENST00000573994 MPRIPQ6WCQ1 1025 aa13.6□□□□□ -0.23
RPA1-206ENST00000573994 AEBP1Q8IUX7 1158 aa13.6□□□□□ -0.23
RPA1-206ENST00000573994 PLCD3Q8N3E9 789 aa13.6□□□□□ -0.23
RPA1-206ENST00000573994 CCNL1Q9UK58 526 aaPredicted RBP13.6□□□□□ -0.23
RPA1-206ENST00000573994 KAT6BQ8WYB5 2073 aa13.6□□□□□ -0.23
RPA1-206ENST00000573994 PALLDQ8WX93 1383 aa13.59□□□□□ -0.23
RPA1-206ENST00000573994 PER1O15534 1290 aaPredicted RBP13.58□□□□□ -0.24
RPA1-206ENST00000573994 PHKG2P15735 406 aa13.58□□□□□ -0.24
RPA1-206ENST00000573994 DCBLD2Q96PD2 775 aa13.58□□□□□ -0.24
RPA1-206ENST00000573994 LY75O60449 1722 aa13.57□□□□□ -0.24
RPA1-206ENST00000573994 NKX1-1Q15270 411 aaPredicted RBP13.57□□□□□ -0.24
RPA1-206ENST00000573994 PIGBQ92521 554 aa13.57□□□□□ -0.24
RPA1-206ENST00000573994 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.57□□□□□ -0.24
RPA1-206ENST00000573994 HMGB2P26583 209 aaKnown RBP13.56□□□□□ -0.24
RPA1-206ENST00000573994 IL13P35225 146 aa13.56□□□□□ -0.24
RPA1-206ENST00000573994 PTGER2P43116 358 aa13.56□□□□□ -0.24
RPA1-206ENST00000573994 MTHFSP49914 203 aa13.56□□□□□ -0.24
RPA1-206ENST00000573994 SULT6B1Q6IMI4 303 aa13.56□□□□□ -0.24
RPA1-206ENST00000573994 ZNF530Q6P9A1 599 aaPredicted RBP13.56□□□□□ -0.24
RPA1-206ENST00000573994 IFNL2Q8IZJ0 200 aa13.56□□□□□ -0.24
RPA1-206ENST00000573994 MTFR1LQ9H019 292 aa13.56□□□□□ -0.24
RPA1-206ENST00000573994 TFCP2L1Q9NZI6 479 aa13.56□□□□□ -0.24
RPA1-206ENST00000573994 FBXO3Q9UK99 471 aa13.56□□□□□ -0.24
RPA1-206ENST00000573994 PNPLA7Q6ZV29 1317 aa13.56□□□□□ -0.24
RPA1-206ENST00000573994 TMOD3Q9NYL9 352 aa13.55□□□□□ -0.24
RPA1-206ENST00000573994 PLEKHO1Q53GL0 409 aaPredicted RBP13.54□□□□□ -0.24
RPA1-206ENST00000573994 PLEKHG2Q9H7P9 1386 aa13.54□□□□□ -0.24
RPA1-206ENST00000573994 KDM6AO15550 1401 aaPredicted RBP13.54□□□□□ -0.24
RPA1-206ENST00000573994 KDRP35968 1356 aa13.53□□□□□ -0.24
RPA1-206ENST00000573994 NPC1L1Q9UHC9 1359 aa13.53□□□□□ -0.24
RPA1-206ENST00000573994 TUBGCP6Q96RT7 1819 aa13.53□□□□□ -0.24
RPA1-206ENST00000573994 HMOX1P09601 288 aa13.52□□□□□ -0.25
RPA1-206ENST00000573994 SMARCC1Q92922 1105 aaPredicted RBP13.52□□□□□ -0.25
RPA1-206ENST00000573994 SGIP1Q9BQI5 828 aa13.52□□□□□ -0.25
RPA1-206ENST00000573994 ASAP1Q9ULH1 1129 aa13.52□□□□□ -0.25
RPA1-206ENST00000573994 C5P01031 1676 aa13.52□□□□□ -0.25
RPA1-206ENST00000573994 ITGB4P16144 1822 aa13.51□□□□□ -0.25
RPA1-206ENST00000573994 COL3A1P02461 1466 aaPredicted RBP13.51□□□□□ -0.25
RPA1-206ENST00000573994 AMOTQ4VCS5 1084 aa13.51□□□□□ -0.25
RPA1-206ENST00000573994 LOC102724428A0A0B4J2F2 783 aa13.5□□□□□ -0.25
RPA1-206ENST00000573994 SIK1P57059 783 aa13.5□□□□□ -0.25
RPA1-206ENST00000573994 C1orf141Q5JVX7 400 aa13.5□□□□□ -0.25
RPA1-206ENST00000573994 DCAF5Q96JK2 942 aa13.5□□□□□ -0.25
RPA1-206ENST00000573994 FHDC1Q9C0D6 1143 aaPredicted RBP13.5□□□□□ -0.25
RPA1-206ENST00000573994 ATG3Q9NT62 314 aa13.5□□□□□ -0.25
RPA1-206ENST00000573994 QSER1Q2KHR3 1735 aa13.5□□□□□ -0.25
RPA1-206ENST00000573994 DIAPH1O60610 1272 aaKnown RBP13.49□□□□□ -0.25
RPA1-206ENST00000573994 HSP90AB1P08238 724 aaKnown RBP13.49□□□□□ -0.25
RPA1-206ENST00000573994 MSL1Q68DK7 614 aa13.49□□□□□ -0.25
RPA1-206ENST00000573994 SMIM5Q71RC9 77 aa13.49□□□□□ -0.25
RPA1-206ENST00000573994 AMIGO3Q86WK7 504 aa13.49□□□□□ -0.25
RPA1-206ENST00000573994 COL23A1Q86Y22 540 aaPredicted RBP13.49□□□□□ -0.25
RPA1-206ENST00000573994 LINC00116Q8NCU8 138 aa13.49□□□□□ -0.25
RPA1-206ENST00000573994 AK7Q96M32 723 aa13.49□□□□□ -0.25
RPA1-206ENST00000573994 ARXQ96QS3 562 aa13.49□□□□□ -0.25
RPA1-206ENST00000573994 C4BP0C0L5 1744 aa13.48□□□□□ -0.25
RPA1-206ENST00000573994 PHF14O94880 888 aa13.48□□□□□ -0.25
RPA1-206ENST00000573994 ITPK1Q13572 414 aa13.48□□□□□ -0.25
RPA1-206ENST00000573994 KLHL34Q8N239 644 aa13.48□□□□□ -0.25
RPA1-206ENST00000573994 ERVV-2B6SEH9 535 aa13.47□□□□□ -0.25
RPA1-206ENST00000573994 U2SURPO15042 1029 aaKnown RBP13.47□□□□□ -0.25
RPA1-206ENST00000573994 POLD1P28340 1107 aa13.47□□□□□ -0.25
RPA1-206ENST00000573994 CABP4P57796 275 aa13.47□□□□□ -0.25
RPA1-206ENST00000573994 SLC16A10Q8TF71 515 aa13.47□□□□□ -0.25
RPA1-206ENST00000573994 UTRNP46939 3433 aa13.47□□□□□ -0.25
RPA1-206ENST00000573994 ATP6V1AP38606 617 aa13.46□□□□□ -0.25
RPA1-206ENST00000573994 PHF12Q96QT6 1004 aa13.46□□□□□ -0.25
RPA1-206ENST00000573994 TSPYL2Q9H2G4 693 aaPredicted RBP13.46□□□□□ -0.25
RPA1-206ENST00000573994 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.45□□□□□ -0.26
RPA1-206ENST00000573994 SLC4A9Q96Q91 983 aa13.45□□□□□ -0.26
RPA1-206ENST00000573994 SYT17Q9BSW7 474 aa13.45□□□□□ -0.26
RPA1-206ENST00000573994 TAF1LQ8IZX4 1826 aa13.45□□□□□ -0.26
RPA1-206ENST00000573994 GNPATO15228 680 aa13.44□□□□□ -0.26
RPA1-206ENST00000573994 MTHFSDQ2M296 383 aaKnown RBP13.44□□□□□ -0.26
RPA1-206ENST00000573994 AKAP4Q5JQC9 854 aa13.44□□□□□ -0.26
RPA1-206ENST00000573994 PTCD1O75127 700 aaKnown RBP13.43□□□□□ -0.26
RPA1-206ENST00000573994 PPP2R1AP30153 589 aa13.43□□□□□ -0.26
RPA1-206ENST00000573994 NFATC2IPQ8NCF5 419 aa13.43□□□□□ -0.26
RPA1-206ENST00000573994 CFAP53Q96M91 514 aa13.43□□□□□ -0.26
RPA1-206ENST00000573994 MAP3K5Q99683 1374 aa13.43□□□□□ -0.26
RPA1-206ENST00000573994 MRC1P22897 1456 aa13.42□□□□□ -0.26
RPA1-206ENST00000573994 GALR2O43603 387 aaPredicted RBP13.42□□□□□ -0.26
RPA1-206ENST00000573994 FLAD1Q8NFF5 587 aa13.42□□□□□ -0.26
RPA1-206ENST00000573994 LGR6Q9HBX8 967 aa13.42□□□□□ -0.26
RPA1-206ENST00000573994 GOLGB1Q14789 3259 aaKnown RBP13.41□□□□□ -0.26
RPA1-206ENST00000573994 RNMTO43148 476 aaKnown RBP13.41□□□□□ -0.26
RPA1-206ENST00000573994 SSFA2P28290 1259 aa13.41□□□□□ -0.26
RPA1-206ENST00000573994 COL24A1Q17RW2 1714 aa13.41□□□□□ -0.26
RPA1-206ENST00000573994 UBR3Q6ZT12 1888 aa13.4□□□□□ -0.26
RPA1-206ENST00000573994 NLGN2Q8NFZ4 835 aa13.4□□□□□ -0.26
RPA1-206ENST00000573994 SLC52A2Q9HAB3 445 aa13.4□□□□□ -0.26
RPA1-206ENST00000573994 PRKAR2BP31323 418 aa13.39□□□□□ -0.27
RPA1-206ENST00000573994 SLC39A6Q13433 755 aa13.39□□□□□ -0.27
RPA1-206ENST00000573994 SCN11AQ9UI33 1791 aa13.39□□□□□ -0.27
RPA1-206ENST00000573994 CNTNAP4Q9C0A0 1308 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms