RNA–Protein interactions for RNA: ENST00000573519.5

NPLOC4-213, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 1 (best)

Gene NPLOC4, Length 654 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-213ENST00000573519 SYT17Q9BSW7 474 aa17.15■□□□□ 0.34
NPLOC4-213ENST00000573519 TAF1LQ8IZX4 1826 aa17.14■□□□□ 0.34
NPLOC4-213ENST00000573519 MSL1Q68DK7 614 aa17.14■□□□□ 0.33
NPLOC4-213ENST00000573519 LINC00116Q8NCU8 138 aa17.14■□□□□ 0.33
NPLOC4-213ENST00000573519 RBM42Q9BTD8 480 aaKnown RBP17.14■□□□□ 0.33
NPLOC4-213ENST00000573519 U2SURPO15042 1029 aaKnown RBP17.13■□□□□ 0.33
NPLOC4-213ENST00000573519 FLAD1Q8NFF5 587 aa17.13■□□□□ 0.33
NPLOC4-213ENST00000573519 ITPK1Q13572 414 aa17.12■□□□□ 0.33
NPLOC4-213ENST00000573519 AKAP4Q5JQC9 854 aa17.11■□□□□ 0.33
NPLOC4-213ENST00000573519 SMIM5Q71RC9 77 aa17.11■□□□□ 0.33
NPLOC4-213ENST00000573519 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.1■□□□□ 0.33
NPLOC4-213ENST00000573519 GNPATO15228 680 aa17.1■□□□□ 0.33
NPLOC4-213ENST00000573519 NFATC2IPQ8NCF5 419 aa17.1■□□□□ 0.33
NPLOC4-213ENST00000573519 CFAP53Q96M91 514 aa17.1■□□□□ 0.33
NPLOC4-213ENST00000573519 AMIGO3Q86WK7 504 aa17.09■□□□□ 0.33
NPLOC4-213ENST00000573519 COL3A1P02461 1466 aaPredicted RBP17.09■□□□□ 0.33
NPLOC4-213ENST00000573519 PTCD1O75127 700 aaKnown RBP17.08■□□□□ 0.32
NPLOC4-213ENST00000573519 MTHFSDQ2M296 383 aaKnown RBP17.08■□□□□ 0.32
NPLOC4-213ENST00000573519 COL24A1Q17RW2 1714 aa17.07■□□□□ 0.32
NPLOC4-213ENST00000573519 MAP3K5Q99683 1374 aa17.07■□□□□ 0.32
NPLOC4-213ENST00000573519 YY1P25490 414 aa17.07■□□□□ 0.32
NPLOC4-213ENST00000573519 SSFA2P28290 1259 aa17.07■□□□□ 0.32
NPLOC4-213ENST00000573519 SLC4A9Q96Q91 983 aa17.07■□□□□ 0.32
NPLOC4-213ENST00000573519 LGR6Q9HBX8 967 aa17.07■□□□□ 0.32
NPLOC4-213ENST00000573519 UBR3Q6ZT12 1888 aa17.06■□□□□ 0.32
NPLOC4-213ENST00000573519 PELP1Q8IZL8 1130 aaKnown RBP17.06■□□□□ 0.32
NPLOC4-213ENST00000573519 RNMTO43148 476 aaKnown RBP17.05■□□□□ 0.32
NPLOC4-213ENST00000573519 PPP2R1AP30153 589 aa17.05■□□□□ 0.32
NPLOC4-213ENST00000573519 SLC52A2Q9HAB3 445 aa17.05■□□□□ 0.32
NPLOC4-213ENST00000573519 SCN11AQ9UI33 1791 aa17.05■□□□□ 0.32
NPLOC4-213ENST00000573519 GPR162Q16538 588 aa17.04■□□□□ 0.32
NPLOC4-213ENST00000573519 NLGN2Q8NFZ4 835 aa17.04■□□□□ 0.32
NPLOC4-213ENST00000573519 RTCBQ9Y3I0 505 aaKnown RBP17.04■□□□□ 0.32
NPLOC4-213ENST00000573519 TRAPPC3LQ5T215 181 aa17.03■□□□□ 0.32
NPLOC4-213ENST00000573519 NUDCQ9Y266 331 aa17.03■□□□□ 0.32
NPLOC4-213ENST00000573519 ZNF831Q5JPB2 1677 aa17.02■□□□□ 0.32
NPLOC4-213ENST00000573519 CNTNAP4Q9C0A0 1308 aa17.01■□□□□ 0.31
NPLOC4-213ENST00000573519 U2AF1L5P0DN76 240 aaPredicted RBP17.01■□□□□ 0.31
NPLOC4-213ENST00000573519 U2AF1Q01081 240 aaKnown RBP eCLIP17.01■□□□□ 0.312e-6■■■□□ 17.1
NPLOC4-213ENST00000573519 SLC39A6Q13433 755 aa17.01■□□□□ 0.31
NPLOC4-213ENST00000573519 GAS2L2Q8NHY3 880 aa17.01■□□□□ 0.31
NPLOC4-213ENST00000573519 COL5A3P25940 1745 aaPredicted RBP17.01■□□□□ 0.31
NPLOC4-213ENST00000573519 MRC1P22897 1456 aa17■□□□□ 0.31
NPLOC4-213ENST00000573519 PRKAR2BP31323 418 aa17■□□□□ 0.31
NPLOC4-213ENST00000573519 RC3H1Q5TC82 1133 aaKnown RBP17■□□□□ 0.31
NPLOC4-213ENST00000573519 GNAT3A8MTJ3 354 aa16.99■□□□□ 0.31
NPLOC4-213ENST00000573519 RPS6KA4O75676 772 aa16.99■□□□□ 0.31
NPLOC4-213ENST00000573519 RFC4P35249 363 aa16.99■□□□□ 0.31
NPLOC4-213ENST00000573519 CRKLP46109 303 aaKnown RBP16.99■□□□□ 0.31
NPLOC4-213ENST00000573519 ARHGEF1Q92888 912 aaKnown RBP16.99■□□□□ 0.31
NPLOC4-213ENST00000573519 TEFQ10587 303 aa16.98■□□□□ 0.31
NPLOC4-213ENST00000573519 DNAJC10Q8IXB1 793 aa16.98■□□□□ 0.31
NPLOC4-213ENST00000573519 RSPH6AQ9H0K4 717 aa16.98■□□□□ 0.31
NPLOC4-213ENST00000573519 TJP1Q07157 1748 aa16.98■□□□□ 0.31
NPLOC4-213ENST00000573519 ADRA2BP18089 450 aa16.97■□□□□ 0.31
NPLOC4-213ENST00000573519 TTC5Q8N0Z6 440 aa16.97■□□□□ 0.31
NPLOC4-213ENST00000573519 PHACTR3Q96KR7 559 aa16.97■□□□□ 0.31
NPLOC4-213ENST00000573519 CD2APQ9Y5K6 639 aa16.97■□□□□ 0.31
NPLOC4-213ENST00000573519 VIRMAQ69YN4 1812 aaKnown RBP16.97■□□□□ 0.31
NPLOC4-213ENST00000573519 ADAMTS7Q9UKP4 1686 aa16.97■□□□□ 0.31
NPLOC4-213ENST00000573519 MMP10P09238 476 aa16.96■□□□□ 0.31
NPLOC4-213ENST00000573519 IL17REQ8NFR9 667 aa16.96■□□□□ 0.31
NPLOC4-213ENST00000573519 NLGN1Q8N2Q7 840 aa16.95■□□□□ 0.3
NPLOC4-213ENST00000573519 KCPQ6ZWJ8 1503 aa16.95■□□□□ 0.3
NPLOC4-213ENST00000573519 CCDC87Q9NVE4 849 aa16.94■□□□□ 0.3
NPLOC4-213ENST00000573519 CICQ96RK0 1608 aaPredicted RBP16.94■□□□□ 0.3
NPLOC4-213ENST00000573519 FCHSD2O94868 740 aa16.93■□□□□ 0.3
NPLOC4-213ENST00000573519 GYS1P13807 737 aa16.93■□□□□ 0.3
NPLOC4-213ENST00000573519 YBX3P16989 372 aaKnown RBP eCLIP16.93■□□□□ 0.3
NPLOC4-213ENST00000573519 DDX10Q13206 875 aaKnown RBP16.93■□□□□ 0.3
NPLOC4-213ENST00000573519 INTS5Q6P9B9 1019 aaKnown RBP16.93■□□□□ 0.3
NPLOC4-213ENST00000573519 SRP68Q9UHB9 627 aaKnown RBP16.93■□□□□ 0.3
NPLOC4-213ENST00000573519 WWC3Q9ULE0 1092 aa16.93■□□□□ 0.3
NPLOC4-213ENST00000573519 C4AP0C0L4 1744 aa16.93■□□□□ 0.3
NPLOC4-213ENST00000573519 CYP19A1P11511 503 aaPredicted RBP16.92■□□□□ 0.3
NPLOC4-213ENST00000573519 RTF1Q92541 710 aaKnown RBP16.92■□□□□ 0.3
NPLOC4-213ENST00000573519 MYH14Q7Z406 1995 aaKnown RBP16.91■□□□□ 0.3
NPLOC4-213ENST00000573519 NEFMP07197 916 aa16.91■□□□□ 0.3
NPLOC4-213ENST00000573519 ZEB1P37275 1124 aaPredicted RBP16.91■□□□□ 0.3
NPLOC4-213ENST00000573519 ZNF790Q6PG37 636 aa16.91■□□□□ 0.3
NPLOC4-213ENST00000573519 VSIG10Q8N0Z9 540 aa16.91■□□□□ 0.3
NPLOC4-213ENST00000573519 PARP3Q9Y6F1 533 aa16.91■□□□□ 0.3
NPLOC4-213ENST00000573519 BTBD11A6QL63 1104 aa16.9■□□□□ 0.3
NPLOC4-213ENST00000573519 GRIN3BO60391 1043 aa16.9■□□□□ 0.3
NPLOC4-213ENST00000573519 MCM10Q7L590 875 aa16.9■□□□□ 0.3
NPLOC4-213ENST00000573519 ZBTB1Q9Y2K1 713 aa16.9■□□□□ 0.3
NPLOC4-213ENST00000573519 USP42Q9H9J4 1324 aaKnown RBP16.9■□□□□ 0.3
NPLOC4-213ENST00000573519 UTRNP46939 3433 aa16.9■□□□□ 0.3
NPLOC4-213ENST00000573519 CEMIPQ8WUJ3 1361 aa16.89■□□□□ 0.3
NPLOC4-213ENST00000573519 ZPR1O75312 459 aa16.89■□□□□ 0.29
NPLOC4-213ENST00000573519 CANXP27824 592 aaKnown RBP16.89■□□□□ 0.29
NPLOC4-213ENST00000573519 ZNF496Q96IT1 587 aaPredicted RBP16.89■□□□□ 0.29
NPLOC4-213ENST00000573519 SOS1Q07889 1333 aaPredicted RBP16.89■□□□□ 0.29
NPLOC4-213ENST00000573519 UBR2Q8IWV8 1755 aa16.89■□□□□ 0.29
NPLOC4-213ENST00000573519 STARD3NLO95772 234 aa16.88■□□□□ 0.29
NPLOC4-213ENST00000573519 FKBP8Q14318 412 aa16.88■□□□□ 0.29
NPLOC4-213ENST00000573519 USPL1Q5W0Q7 1092 aa16.88■□□□□ 0.29
NPLOC4-213ENST00000573519 FMNL2Q96PY5 1086 aa16.88■□□□□ 0.29
NPLOC4-213ENST00000573519 COL15A1P39059 1388 aa16.88■□□□□ 0.29
NPLOC4-213ENST00000573519 SIPA1L3O60292 1781 aaPredicted RBP16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms