RNA–Protein interactions for RNA: ENST00000570324.1

NPLOC4-204, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 3

Gene NPLOC4, Length 414 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-204ENST00000570324 C4BP0C0L5 1744 aa12.09□□□□□ -0.47
NPLOC4-204ENST00000570324 ATG3Q9NT62 314 aa12.09□□□□□ -0.47
NPLOC4-204ENST00000570324 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.08□□□□□ -0.48
NPLOC4-204ENST00000570324 GNPATO15228 680 aa12.08□□□□□ -0.48
NPLOC4-204ENST00000570324 IL13P35225 146 aa12.08□□□□□ -0.48
NPLOC4-204ENST00000570324 DIAPH1O60610 1272 aaKnown RBP12.07□□□□□ -0.48
NPLOC4-204ENST00000570324 SSFA2P28290 1259 aa12.07□□□□□ -0.48
NPLOC4-204ENST00000570324 LINC00116Q8NCU8 138 aa12.07□□□□□ -0.48
NPLOC4-204ENST00000570324 PER1O15534 1290 aaPredicted RBP12.06□□□□□ -0.48
NPLOC4-204ENST00000570324 HMOX1P09601 288 aa12.06□□□□□ -0.48
NPLOC4-204ENST00000570324 ITPK1Q13572 414 aa12.06□□□□□ -0.48
NPLOC4-204ENST00000570324 RTCBQ9Y3I0 505 aaKnown RBP12.06□□□□□ -0.48
NPLOC4-204ENST00000570324 COL24A1Q17RW2 1714 aa12.06□□□□□ -0.48
NPLOC4-204ENST00000570324 TRAPPC3LQ5T215 181 aa12.05□□□□□ -0.48
NPLOC4-204ENST00000570324 SMIM5Q71RC9 77 aa12.05□□□□□ -0.48
NPLOC4-204ENST00000570324 NFATC2IPQ8NCF5 419 aa12.05□□□□□ -0.48
NPLOC4-204ENST00000570324 NLGN2Q8NFZ4 835 aa12.05□□□□□ -0.48
NPLOC4-204ENST00000570324 KDRP35968 1356 aa12.05□□□□□ -0.48
NPLOC4-204ENST00000570324 U2SURPO15042 1029 aaKnown RBP12.04□□□□□ -0.48
NPLOC4-204ENST00000570324 GRIN3BO60391 1043 aa12.04□□□□□ -0.48
NPLOC4-204ENST00000570324 PTCD1O75127 700 aaKnown RBP12.04□□□□□ -0.48
NPLOC4-204ENST00000570324 AKAP4Q5JQC9 854 aa12.04□□□□□ -0.48
NPLOC4-204ENST00000570324 CD2APQ9Y5K6 639 aa12.04□□□□□ -0.48
NPLOC4-204ENST00000570324 UBR3Q6ZT12 1888 aa12.04□□□□□ -0.48
NPLOC4-204ENST00000570324 KDM6AO15550 1401 aaPredicted RBP12.03□□□□□ -0.48
NPLOC4-204ENST00000570324 CHD4Q14839 1912 aa12.03□□□□□ -0.48
NPLOC4-204ENST00000570324 RFC4P35249 363 aa12.02□□□□□ -0.49
NPLOC4-204ENST00000570324 RC3H1Q5TC82 1133 aaKnown RBP12.02□□□□□ -0.49
NPLOC4-204ENST00000570324 AMIGO3Q86WK7 504 aa12.02□□□□□ -0.49
NPLOC4-204ENST00000570324 CFAP53Q96M91 514 aa12.02□□□□□ -0.49
NPLOC4-204ENST00000570324 NLGN1Q8N2Q7 840 aa12.01□□□□□ -0.49
NPLOC4-204ENST00000570324 NPC1L1Q9UHC9 1359 aa12.01□□□□□ -0.49
NPLOC4-204ENST00000570324 RPS6KA4O75676 772 aa12□□□□□ -0.49
NPLOC4-204ENST00000570324 ADRA2BP18089 450 aa12□□□□□ -0.49
NPLOC4-204ENST00000570324 MTHFSDQ2M296 383 aaKnown RBP12□□□□□ -0.49
NPLOC4-204ENST00000570324 ZNF784Q8NCA9 323 aaPredicted RBP12□□□□□ -0.49
NPLOC4-204ENST00000570324 ARHGEF1Q92888 912 aaKnown RBP12□□□□□ -0.49
NPLOC4-204ENST00000570324 SLC4A9Q96Q91 983 aa12□□□□□ -0.49
NPLOC4-204ENST00000570324 SLC52A2Q9HAB3 445 aa12□□□□□ -0.49
NPLOC4-204ENST00000570324 CNTNAP4Q9C0A0 1308 aa12□□□□□ -0.49
NPLOC4-204ENST00000570324 RNMTO43148 476 aaKnown RBP11.99□□□□□ -0.49
NPLOC4-204ENST00000570324 MMP10P09238 476 aa11.99□□□□□ -0.49
NPLOC4-204ENST00000570324 LGR6Q9HBX8 967 aa11.99□□□□□ -0.49
NPLOC4-204ENST00000570324 NUDCQ9Y266 331 aa11.99□□□□□ -0.49
NPLOC4-204ENST00000570324 ZNF831Q5JPB2 1677 aa11.99□□□□□ -0.49
NPLOC4-204ENST00000570324 SCN11AQ9UI33 1791 aa11.99□□□□□ -0.49
NPLOC4-204ENST00000570324 YBX3P16989 372 aaKnown RBP eCLIP11.98□□□□□ -0.49
NPLOC4-204ENST00000570324 CRKLP46109 303 aaKnown RBP11.98□□□□□ -0.49
NPLOC4-204ENST00000570324 TTC5Q8N0Z6 440 aa11.98□□□□□ -0.49
NPLOC4-204ENST00000570324 PARP3Q9Y6F1 533 aa11.98□□□□□ -0.49
NPLOC4-204ENST00000570324 TEFQ10587 303 aa11.97□□□□□ -0.49
NPLOC4-204ENST00000570324 GAS2L2Q8NHY3 880 aa11.97□□□□□ -0.49
NPLOC4-204ENST00000570324 CCDC87Q9NVE4 849 aa11.97□□□□□ -0.49
NPLOC4-204ENST00000570324 WWC3Q9ULE0 1092 aa11.97□□□□□ -0.49
NPLOC4-204ENST00000570324 COL5A3P25940 1745 aaPredicted RBP11.97□□□□□ -0.49
NPLOC4-204ENST00000570324 GNAT3A8MTJ3 354 aa11.96□□□□□ -0.49
NPLOC4-204ENST00000570324 SLC39A6Q13433 755 aa11.96□□□□□ -0.49
NPLOC4-204ENST00000570324 ZPR1O75312 459 aa11.95□□□□□ -0.5
NPLOC4-204ENST00000570324 GYS1P13807 737 aa11.95□□□□□ -0.5
NPLOC4-204ENST00000570324 DNAJC10Q8IXB1 793 aa11.95□□□□□ -0.5
NPLOC4-204ENST00000570324 VIRMAQ69YN4 1812 aaKnown RBP11.95□□□□□ -0.5
NPLOC4-204ENST00000570324 U2AF1L5P0DN76 240 aaPredicted RBP11.94□□□□□ -0.5
NPLOC4-204ENST00000570324 PRKAR2BP31323 418 aa11.94□□□□□ -0.5
NPLOC4-204ENST00000570324 TGFB2P61812 414 aa11.94□□□□□ -0.5
NPLOC4-204ENST00000570324 U2AF1Q01081 240 aaKnown RBP eCLIP11.94□□□□□ -0.5
NPLOC4-204ENST00000570324 CICQ96RK0 1608 aaPredicted RBP11.93□□□□□ -0.5
NPLOC4-204ENST00000570324 MYH14Q7Z406 1995 aaKnown RBP11.93□□□□□ -0.5
NPLOC4-204ENST00000570324 STARD3NLO95772 234 aa11.93□□□□□ -0.5
NPLOC4-204ENST00000570324 NEFMP07197 916 aa11.93□□□□□ -0.5
NPLOC4-204ENST00000570324 PPP2R1AP30153 589 aa11.93□□□□□ -0.5
NPLOC4-204ENST00000570324 INTS5Q6P9B9 1019 aaKnown RBP11.93□□□□□ -0.5
NPLOC4-204ENST00000570324 NPM2Q86SE8 214 aaKnown RBP11.93□□□□□ -0.5
NPLOC4-204ENST00000570324 SRP68Q9UHB9 627 aaKnown RBP11.93□□□□□ -0.5
NPLOC4-204ENST00000570324 TJP1Q07157 1748 aa11.93□□□□□ -0.5
NPLOC4-204ENST00000570324 COL3A1P02461 1466 aaPredicted RBP11.93□□□□□ -0.5
NPLOC4-204ENST00000570324 MRC1P22897 1456 aa11.92□□□□□ -0.5
NPLOC4-204ENST00000570324 GIGYF1O75420 1035 aaPredicted RBP11.92□□□□□ -0.5
NPLOC4-204ENST00000570324 CYP19A1P11511 503 aaPredicted RBP11.92□□□□□ -0.5
NPLOC4-204ENST00000570324 VSIG10Q8N0Z9 540 aa11.92□□□□□ -0.5
NPLOC4-204ENST00000570324 RTF1Q92541 710 aaKnown RBP11.92□□□□□ -0.5
NPLOC4-204ENST00000570324 BCS1LQ9Y276 419 aa11.92□□□□□ -0.5
NPLOC4-204ENST00000570324 USP42Q9H9J4 1324 aaKnown RBP11.91□□□□□ -0.5
NPLOC4-204ENST00000570324 A0A0G2JLW4 131 aa11.91□□□□□ -0.5
NPLOC4-204ENST00000570324 CANXP27824 592 aaKnown RBP11.91□□□□□ -0.5
NPLOC4-204ENST00000570324 FKBP8Q14318 412 aa11.91□□□□□ -0.5
NPLOC4-204ENST00000570324 IL17REQ8NFR9 667 aa11.91□□□□□ -0.5
NPLOC4-204ENST00000570324 TEX13AQ9BXU3 409 aaPredicted RBP11.91□□□□□ -0.5
NPLOC4-204ENST00000570324 C4AP0C0L4 1744 aa11.91□□□□□ -0.5
NPLOC4-204ENST00000570324 FCHSD2O94868 740 aa11.9□□□□□ -0.5
NPLOC4-204ENST00000570324 USPL1Q5W0Q7 1092 aa11.9□□□□□ -0.5
NPLOC4-204ENST00000570324 ZNF790Q6PG37 636 aa11.9□□□□□ -0.5
NPLOC4-204ENST00000570324 PHACTR3Q96KR7 559 aa11.9□□□□□ -0.5
NPLOC4-204ENST00000570324 RSPH6AQ9H0K4 717 aa11.9□□□□□ -0.5
NPLOC4-204ENST00000570324 ZNF330Q9Y3S2 320 aaPredicted RBP11.9□□□□□ -0.5
NPLOC4-204ENST00000570324 SOS1Q07889 1333 aaPredicted RBP11.89□□□□□ -0.51
NPLOC4-204ENST00000570324 A0A087WZG4 1122 aa11.89□□□□□ -0.51
NPLOC4-204ENST00000570324 BTBD11A6QL63 1104 aa11.89□□□□□ -0.51
NPLOC4-204ENST00000570324 DPEP1P16444 411 aa11.89□□□□□ -0.51
NPLOC4-204ENST00000570324 FMNL2Q96PY5 1086 aa11.89□□□□□ -0.51
NPLOC4-204ENST00000570324 NARFQ9UHQ1 456 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms