RNA–Protein interactions for RNA: ENST00000566818.1

IFT140-208, Transcript of intraflagellar transport 140, humanhuman

TSL 3

Gene IFT140, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140-208ENST00000566818 ATG3Q9NT62 314 aa25.33■■□□□ 1.65
IFT140-208ENST00000566818 COL3A1P02461 1466 aaPredicted RBP25.32■■□□□ 1.64
IFT140-208ENST00000566818 HMOX1P09601 288 aa25.31■■□□□ 1.64
IFT140-208ENST00000566818 ATP6V1AP38606 617 aa25.31■■□□□ 1.64
IFT140-208ENST00000566818 ZNF831Q5JPB2 1677 aa25.31■■□□□ 1.64
IFT140-208ENST00000566818 UBR3Q6ZT12 1888 aa25.3■■□□□ 1.64
IFT140-208ENST00000566818 AKAP4Q5JQC9 854 aa25.3■■□□□ 1.64
IFT140-208ENST00000566818 LINC00116Q8NCU8 138 aa25.29■■□□□ 1.64
IFT140-208ENST00000566818 SCN11AQ9UI33 1791 aa25.28■■□□□ 1.64
IFT140-208ENST00000566818 SSFA2P28290 1259 aa25.28■■□□□ 1.64
IFT140-208ENST00000566818 KLHL34Q8N239 644 aa25.28■■□□□ 1.64
IFT140-208ENST00000566818 CFAP53Q96M91 514 aa25.28■■□□□ 1.64
IFT140-208ENST00000566818 PHF14O94880 888 aa25.27■■□□□ 1.64
IFT140-208ENST00000566818 ITPK1Q13572 414 aa25.27■■□□□ 1.64
IFT140-208ENST00000566818 RBM42Q9BTD8 480 aaKnown RBP25.27■■□□□ 1.64
IFT140-208ENST00000566818 MSL1Q68DK7 614 aa25.26■■□□□ 1.63
IFT140-208ENST00000566818 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.25■■□□□ 1.63
IFT140-208ENST00000566818 U2SURPO15042 1029 aaKnown RBP25.25■■□□□ 1.63
IFT140-208ENST00000566818 GNPATO15228 680 aa25.25■■□□□ 1.63
IFT140-208ENST00000566818 MRC1P22897 1456 aa25.23■■□□□ 1.63
IFT140-208ENST00000566818 NFATC2IPQ8NCF5 419 aa25.23■■□□□ 1.63
IFT140-208ENST00000566818 COL5A3P25940 1745 aaPredicted RBP25.23■■□□□ 1.63
IFT140-208ENST00000566818 YY1P25490 414 aa25.21■■□□□ 1.63
IFT140-208ENST00000566818 CNTNAP4Q9C0A0 1308 aa25.2■■□□□ 1.62
IFT140-208ENST00000566818 MTHFSDQ2M296 383 aaKnown RBP25.2■■□□□ 1.62
IFT140-208ENST00000566818 AMIGO3Q86WK7 504 aa25.2■■□□□ 1.62
IFT140-208ENST00000566818 SLC52A2Q9HAB3 445 aa25.2■■□□□ 1.62
IFT140-208ENST00000566818 CICQ96RK0 1608 aaPredicted RBP25.19■■□□□ 1.62
IFT140-208ENST00000566818 RNMTO43148 476 aaKnown RBP25.19■■□□□ 1.62
IFT140-208ENST00000566818 SLC4A9Q96Q91 983 aa25.19■■□□□ 1.62
IFT140-208ENST00000566818 NUDCQ9Y266 331 aa25.19■■□□□ 1.62
IFT140-208ENST00000566818 RTCBQ9Y3I0 505 aaKnown RBP25.19■■□□□ 1.62
IFT140-208ENST00000566818 ADAMTS7Q9UKP4 1686 aa25.19■■□□□ 1.62
IFT140-208ENST00000566818 VIRMAQ69YN4 1812 aaKnown RBP25.19■■□□□ 1.62
IFT140-208ENST00000566818 PTCD1O75127 700 aaKnown RBP25.18■■□□□ 1.62
IFT140-208ENST00000566818 RC3H1Q5TC82 1133 aaKnown RBP25.18■■□□□ 1.62
IFT140-208ENST00000566818 GAS2L2Q8NHY3 880 aa25.18■■□□□ 1.62
IFT140-208ENST00000566818 PPP2R1AP30153 589 aa25.17■■□□□ 1.62
IFT140-208ENST00000566818 ADRA2BP18089 450 aa25.16■■□□□ 1.62
IFT140-208ENST00000566818 SMIM5Q71RC9 77 aa25.16■■□□□ 1.62
IFT140-208ENST00000566818 LGR6Q9HBX8 967 aa25.16■■□□□ 1.62
IFT140-208ENST00000566818 TJP1Q07157 1748 aa25.15■■□□□ 1.62
IFT140-208ENST00000566818 GPR162Q16538 588 aa25.14■■□□□ 1.62
IFT140-208ENST00000566818 TRAPPC3LQ5T215 181 aa25.14■■□□□ 1.62
IFT140-208ENST00000566818 NLGN2Q8NFZ4 835 aa25.13■■□□□ 1.61
IFT140-208ENST00000566818 CD2APQ9Y5K6 639 aa25.13■■□□□ 1.61
IFT140-208ENST00000566818 GNAT3A8MTJ3 354 aa25.11■■□□□ 1.61
IFT140-208ENST00000566818 RPS6KA4O75676 772 aa25.11■■□□□ 1.61
IFT140-208ENST00000566818 PELP1Q8IZL8 1130 aaKnown RBP25.11■■□□□ 1.61
IFT140-208ENST00000566818 PRKAR2BP31323 418 aa25.1■■□□□ 1.61
IFT140-208ENST00000566818 CRKLP46109 303 aaKnown RBP25.1■■□□□ 1.61
IFT140-208ENST00000566818 KCPQ6ZWJ8 1503 aa25.09■■□□□ 1.61
IFT140-208ENST00000566818 U2AF1L5P0DN76 240 aaPredicted RBP25.09■■□□□ 1.61
IFT140-208ENST00000566818 RFC4P35249 363 aa25.09■■□□□ 1.61
IFT140-208ENST00000566818 U2AF1Q01081 240 aaKnown RBP eCLIP25.09■■□□□ 1.61
IFT140-208ENST00000566818 TEFQ10587 303 aa25.09■■□□□ 1.61
IFT140-208ENST00000566818 RSPH6AQ9H0K4 717 aa25.09■■□□□ 1.61
IFT140-208ENST00000566818 MYH14Q7Z406 1995 aaKnown RBP25.08■■□□□ 1.61
IFT140-208ENST00000566818 ARHGEF1Q92888 912 aaKnown RBP25.08■■□□□ 1.61
IFT140-208ENST00000566818 C4AP0C0L4 1744 aa25.08■■□□□ 1.61
IFT140-208ENST00000566818 SLC39A6Q13433 755 aa25.07■■□□□ 1.6
IFT140-208ENST00000566818 TTC5Q8N0Z6 440 aa25.07■■□□□ 1.6
IFT140-208ENST00000566818 NLGN1Q8N2Q7 840 aa25.07■■□□□ 1.6
IFT140-208ENST00000566818 CHD4Q14839 1912 aa25.07■■□□□ 1.6
IFT140-208ENST00000566818 UBR2Q8IWV8 1755 aa25.06■■□□□ 1.6
IFT140-208ENST00000566818 MMP10P09238 476 aa25.05■■□□□ 1.6
IFT140-208ENST00000566818 DNAJC10Q8IXB1 793 aa25.05■■□□□ 1.6
IFT140-208ENST00000566818 FCHSD2O94868 740 aa25.04■■□□□ 1.6
IFT140-208ENST00000566818 VSIG10Q8N0Z9 540 aa25.04■■□□□ 1.6
IFT140-208ENST00000566818 CCDC87Q9NVE4 849 aa25.04■■□□□ 1.6
IFT140-208ENST00000566818 SIPA1L3O60292 1781 aaPredicted RBP25.03■■□□□ 1.6
IFT140-208ENST00000566818 PHACTR3Q96KR7 559 aa25.03■■□□□ 1.6
IFT140-208ENST00000566818 GRIN3BO60391 1043 aa25.02■■□□□ 1.6
IFT140-208ENST00000566818 GYS1P13807 737 aa25.02■■□□□ 1.6
IFT140-208ENST00000566818 IL17REQ8NFR9 667 aa25.02■■□□□ 1.6
IFT140-208ENST00000566818 CEMIPQ8WUJ3 1361 aa25.02■■□□□ 1.6
IFT140-208ENST00000566818 INTS5Q6P9B9 1019 aaKnown RBP25.01■■□□□ 1.59
IFT140-208ENST00000566818 NEFMP07197 916 aa25■■□□□ 1.59
IFT140-208ENST00000566818 CYP19A1P11511 503 aaPredicted RBP25■■□□□ 1.59
IFT140-208ENST00000566818 RTF1Q92541 710 aaKnown RBP25■■□□□ 1.59
IFT140-208ENST00000566818 USP42Q9H9J4 1324 aaKnown RBP25■■□□□ 1.59
IFT140-208ENST00000566818 UTRNP46939 3433 aa24.99■■□□□ 1.59
IFT140-208ENST00000566818 SOS1Q07889 1333 aaPredicted RBP24.98■■□□□ 1.59
IFT140-208ENST00000566818 YBX3P16989 372 aaKnown RBP eCLIP24.98■■□□□ 1.59
IFT140-208ENST00000566818 ZNF790Q6PG37 636 aa24.98■■□□□ 1.59
IFT140-208ENST00000566818 PARP3Q9Y6F1 533 aa24.98■■□□□ 1.59
IFT140-208ENST00000566818 KIF13BQ9NQT8 1826 aa24.97■■□□□ 1.59
IFT140-208ENST00000566818 C10orf71Q711Q0 1435 aa24.96■■□□□ 1.59
IFT140-208ENST00000566818 COL15A1P39059 1388 aa24.96■■□□□ 1.59
IFT140-208ENST00000566818 ZPR1O75312 459 aa24.96■■□□□ 1.59
IFT140-208ENST00000566818 STARD3NLO95772 234 aa24.96■■□□□ 1.59
IFT140-208ENST00000566818 RALBP1Q15311 655 aa24.96■■□□□ 1.59
IFT140-208ENST00000566818 SRP68Q9UHB9 627 aaKnown RBP24.96■■□□□ 1.59
IFT140-208ENST00000566818 HEG1Q9ULI3 1381 aa24.95■■□□□ 1.59
IFT140-208ENST00000566818 TEX13AQ9BXU3 409 aaPredicted RBP24.95■■□□□ 1.58
IFT140-208ENST00000566818 ZBTB1Q9Y2K1 713 aa24.95■■□□□ 1.58
IFT140-208ENST00000566818 BTBD11A6QL63 1104 aa24.94■■□□□ 1.58
IFT140-208ENST00000566818 ZNF496Q96IT1 587 aaPredicted RBP24.94■■□□□ 1.58
IFT140-208ENST00000566818 FMNL2Q96PY5 1086 aa24.94■■□□□ 1.58
IFT140-208ENST00000566818 HTATSF1O43719 755 aaKnown RBP24.93■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms