RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 AKAP4Q5JQC9 854 aa22.7■■□□□ 1.22
CLK3-210ENST00000563112 RBM42Q9BTD8 480 aaKnown RBP22.7■■□□□ 1.22
CLK3-210ENST00000563112 KDM6AO15550 1401 aaPredicted RBP22.7■■□□□ 1.22
CLK3-210ENST00000563112 KLHL34Q8N239 644 aa22.69■■□□□ 1.22
CLK3-210ENST00000563112 LINC00116Q8NCU8 138 aa22.69■■□□□ 1.22
CLK3-210ENST00000563112 MAP3K5Q99683 1374 aa22.68■■□□□ 1.22
CLK3-210ENST00000563112 U2SURPO15042 1029 aaKnown RBP22.68■■□□□ 1.22
CLK3-210ENST00000563112 CFAP53Q96M91 514 aa22.68■■□□□ 1.22
CLK3-210ENST00000563112 COL24A1Q17RW2 1714 aa22.68■■□□□ 1.22
CLK3-210ENST00000563112 ITPK1Q13572 414 aa22.67■■□□□ 1.22
CLK3-210ENST00000563112 NFATC2IPQ8NCF5 419 aa22.67■■□□□ 1.22
CLK3-210ENST00000563112 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.66■■□□□ 1.22
CLK3-210ENST00000563112 PHF14O94880 888 aa22.66■■□□□ 1.22
CLK3-210ENST00000563112 SSFA2P28290 1259 aa22.66■■□□□ 1.22
CLK3-210ENST00000563112 MSL1Q68DK7 614 aa22.66■■□□□ 1.22
CLK3-210ENST00000563112 GNPATO15228 680 aa22.65■■□□□ 1.22
CLK3-210ENST00000563112 UBR3Q6ZT12 1888 aa22.63■■□□□ 1.21
CLK3-210ENST00000563112 COL3A1P02461 1466 aaPredicted RBP22.63■■□□□ 1.21
CLK3-210ENST00000563112 MTHFSDQ2M296 383 aaKnown RBP22.63■■□□□ 1.21
CLK3-210ENST00000563112 NUDCQ9Y266 331 aa22.62■■□□□ 1.21
CLK3-210ENST00000563112 SCN11AQ9UI33 1791 aa22.62■■□□□ 1.21
CLK3-210ENST00000563112 RNMTO43148 476 aaKnown RBP22.61■■□□□ 1.21
CLK3-210ENST00000563112 PTCD1O75127 700 aaKnown RBP22.61■■□□□ 1.21
CLK3-210ENST00000563112 YY1P25490 414 aa22.61■■□□□ 1.21
CLK3-210ENST00000563112 AMIGO3Q86WK7 504 aa22.61■■□□□ 1.21
CLK3-210ENST00000563112 SLC4A9Q96Q91 983 aa22.61■■□□□ 1.21
CLK3-210ENST00000563112 SLC52A2Q9HAB3 445 aa22.61■■□□□ 1.21
CLK3-210ENST00000563112 LGR6Q9HBX8 967 aa22.61■■□□□ 1.21
CLK3-210ENST00000563112 RTCBQ9Y3I0 505 aaKnown RBP22.61■■□□□ 1.21
CLK3-210ENST00000563112 ZNF831Q5JPB2 1677 aa22.61■■□□□ 1.21
CLK3-210ENST00000563112 PPP2R1AP30153 589 aa22.6■■□□□ 1.21
CLK3-210ENST00000563112 RC3H1Q5TC82 1133 aaKnown RBP22.6■■□□□ 1.21
CLK3-210ENST00000563112 SMIM5Q71RC9 77 aa22.6■■□□□ 1.21
CLK3-210ENST00000563112 TRAPPC3LQ5T215 181 aa22.59■■□□□ 1.21
CLK3-210ENST00000563112 GAS2L2Q8NHY3 880 aa22.58■■□□□ 1.21
CLK3-210ENST00000563112 CNTNAP4Q9C0A0 1308 aa22.57■■□□□ 1.2
CLK3-210ENST00000563112 GPR162Q16538 588 aa22.57■■□□□ 1.2
CLK3-210ENST00000563112 RPS6KA4O75676 772 aa22.55■■□□□ 1.2
CLK3-210ENST00000563112 ADRA2BP18089 450 aa22.55■■□□□ 1.2
CLK3-210ENST00000563112 GNAT3A8MTJ3 354 aa22.54■■□□□ 1.2
CLK3-210ENST00000563112 PELP1Q8IZL8 1130 aaKnown RBP22.54■■□□□ 1.2
CLK3-210ENST00000563112 NLGN2Q8NFZ4 835 aa22.54■■□□□ 1.2
CLK3-210ENST00000563112 CD2APQ9Y5K6 639 aa22.54■■□□□ 1.2
CLK3-210ENST00000563112 COL5A3P25940 1745 aaPredicted RBP22.54■■□□□ 1.2
CLK3-210ENST00000563112 VIRMAQ69YN4 1812 aaKnown RBP22.53■■□□□ 1.2
CLK3-210ENST00000563112 U2AF1L5P0DN76 240 aaPredicted RBP22.53■■□□□ 1.2
CLK3-210ENST00000563112 PRKAR2BP31323 418 aa22.53■■□□□ 1.2
CLK3-210ENST00000563112 U2AF1Q01081 240 aaKnown RBP eCLIP22.53■■□□□ 1.2
CLK3-210ENST00000563112 MRC1P22897 1456 aa22.53■■□□□ 1.2
CLK3-210ENST00000563112 RFC4P35249 363 aa22.52■■□□□ 1.2
CLK3-210ENST00000563112 CRKLP46109 303 aaKnown RBP22.52■■□□□ 1.2
CLK3-210ENST00000563112 ARHGEF1Q92888 912 aaKnown RBP22.52■■□□□ 1.2
CLK3-210ENST00000563112 TEFQ10587 303 aa22.51■■□□□ 1.19
CLK3-210ENST00000563112 SLC39A6Q13433 755 aa22.51■■□□□ 1.19
CLK3-210ENST00000563112 NLGN1Q8N2Q7 840 aa22.51■■□□□ 1.19
CLK3-210ENST00000563112 RSPH6AQ9H0K4 717 aa22.51■■□□□ 1.19
CLK3-210ENST00000563112 ADAMTS7Q9UKP4 1686 aa22.5■■□□□ 1.19
CLK3-210ENST00000563112 TTC5Q8N0Z6 440 aa22.5■■□□□ 1.19
CLK3-210ENST00000563112 FCHSD2O94868 740 aa22.49■■□□□ 1.19
CLK3-210ENST00000563112 MYH14Q7Z406 1995 aaKnown RBP22.49■■□□□ 1.19
CLK3-210ENST00000563112 DNAJC10Q8IXB1 793 aa22.48■■□□□ 1.19
CLK3-210ENST00000563112 IL17REQ8NFR9 667 aa22.48■■□□□ 1.19
CLK3-210ENST00000563112 PHACTR3Q96KR7 559 aa22.48■■□□□ 1.19
CLK3-210ENST00000563112 CICQ96RK0 1608 aaPredicted RBP22.47■■□□□ 1.19
CLK3-210ENST00000563112 MMP10P09238 476 aa22.47■■□□□ 1.19
CLK3-210ENST00000563112 VSIG10Q8N0Z9 540 aa22.47■■□□□ 1.19
CLK3-210ENST00000563112 TJP1Q07157 1748 aa22.47■■□□□ 1.19
CLK3-210ENST00000563112 GRIN3BO60391 1043 aa22.46■■□□□ 1.19
CLK3-210ENST00000563112 CCDC87Q9NVE4 849 aa22.46■■□□□ 1.19
CLK3-210ENST00000563112 CHD4Q14839 1912 aa22.46■■□□□ 1.19
CLK3-210ENST00000563112 NEFMP07197 916 aa22.45■■□□□ 1.18
CLK3-210ENST00000563112 GYS1P13807 737 aa22.45■■□□□ 1.18
CLK3-210ENST00000563112 INTS5Q6P9B9 1019 aaKnown RBP22.45■■□□□ 1.18
CLK3-210ENST00000563112 CYP19A1P11511 503 aaPredicted RBP22.44■■□□□ 1.18
CLK3-210ENST00000563112 RTF1Q92541 710 aaKnown RBP22.44■■□□□ 1.18
CLK3-210ENST00000563112 KCPQ6ZWJ8 1503 aa22.43■■□□□ 1.18
CLK3-210ENST00000563112 ZNF790Q6PG37 636 aa22.42■■□□□ 1.18
CLK3-210ENST00000563112 PARP3Q9Y6F1 533 aa22.42■■□□□ 1.18
CLK3-210ENST00000563112 ZPR1O75312 459 aa22.41■■□□□ 1.18
CLK3-210ENST00000563112 STARD3NLO95772 234 aa22.41■■□□□ 1.18
CLK3-210ENST00000563112 TEX13AQ9BXU3 409 aaPredicted RBP22.41■■□□□ 1.18
CLK3-210ENST00000563112 CEMIPQ8WUJ3 1361 aa22.4■■□□□ 1.18
CLK3-210ENST00000563112 USP42Q9H9J4 1324 aaKnown RBP22.4■■□□□ 1.18
CLK3-210ENST00000563112 YBX3P16989 372 aaKnown RBP eCLIP22.4■■□□□ 1.18
CLK3-210ENST00000563112 DDX10Q13206 875 aaKnown RBP22.4■■□□□ 1.18
CLK3-210ENST00000563112 RALBP1Q15311 655 aa22.4■■□□□ 1.18
CLK3-210ENST00000563112 SRP68Q9UHB9 627 aaKnown RBP22.4■■□□□ 1.18
CLK3-210ENST00000563112 C4AP0C0L4 1744 aa22.4■■□□□ 1.18
CLK3-210ENST00000563112 BTBD11A6QL63 1104 aa22.39■■□□□ 1.17
CLK3-210ENST00000563112 UBR2Q8IWV8 1755 aa22.39■■□□□ 1.17
CLK3-210ENST00000563112 SOS1Q07889 1333 aaPredicted RBP22.38■■□□□ 1.17
CLK3-210ENST00000563112 HTATSF1O43719 755 aaKnown RBP22.38■■□□□ 1.17
CLK3-210ENST00000563112 ZNF496Q96IT1 587 aaPredicted RBP22.38■■□□□ 1.17
CLK3-210ENST00000563112 FMNL2Q96PY5 1086 aa22.38■■□□□ 1.17
CLK3-210ENST00000563112 PNNQ9H307 717 aaKnown RBP22.38■■□□□ 1.17
CLK3-210ENST00000563112 ZBTB1Q9Y2K1 713 aa22.37■■□□□ 1.17
CLK3-210ENST00000563112 SIPA1L3O60292 1781 aaPredicted RBP22.37■■□□□ 1.17
CLK3-210ENST00000563112 HEG1Q9ULI3 1381 aa22.37■■□□□ 1.17
CLK3-210ENST00000563112 UTRNP46939 3433 aa22.36■■□□□ 1.17
CLK3-210ENST00000563112 CANXP27824 592 aaKnown RBP22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 146.9 ms