RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 PCDH11YQ9BZA8 1340 aa27.16■■□□□ 1.94
CLN3-209ENST00000561689 MVPQ14764 893 aaKnown RBP27.15■■□□□ 1.94
CLN3-209ENST00000561689 HSP90AB1P08238 724 aaKnown RBP27.15■■□□□ 1.94
CLN3-209ENST00000561689 ARHGAP45Q92619 1136 aa27.15■■□□□ 1.94
CLN3-209ENST00000561689 SLC52A2Q9HAB3 445 aa27.15■■□□□ 1.94
CLN3-209ENST00000561689 JCADQ9P266 1359 aa27.14■■□□□ 1.94
CLN3-209ENST00000561689 NFATC2IPQ8NCF5 419 aa27.14■■□□□ 1.94
CLN3-209ENST00000561689 DDX54Q8TDD1 881 aaKnown RBP27.14■■□□□ 1.94
CLN3-209ENST00000561689 PARP4Q9UKK3 1724 aaKnown RBP27.14■■□□□ 1.93
CLN3-209ENST00000561689 SLC4A2P04920 1241 aa27.13■■□□□ 1.93
CLN3-209ENST00000561689 TMEM57Q8N5G2 664 aa27.13■■□□□ 1.93
CLN3-209ENST00000561689 NECTIN2Q92692 538 aa27.13■■□□□ 1.93
CLN3-209ENST00000561689 ADAMTS7Q9UKP4 1686 aa27.13■■□□□ 1.93
CLN3-209ENST00000561689 ITPRIPQ8IWB1 547 aa27.12■■□□□ 1.93
CLN3-209ENST00000561689 SOS1Q07889 1333 aaPredicted RBP27.1■■□□□ 1.93
CLN3-209ENST00000561689 CCDC30Q5VVM6 783 aa27.09■■□□□ 1.93
CLN3-209ENST00000561689 SLC39A6Q13433 755 aa27.09■■□□□ 1.93
CLN3-209ENST00000561689 STK31Q9BXU1 1019 aa27.09■■□□□ 1.93
CLN3-209ENST00000561689 API5Q9BZZ5 524 aaKnown RBP27.08■■□□□ 1.93
CLN3-209ENST00000561689 PLCH1Q4KWH8 1693 aa27.08■■□□□ 1.93
CLN3-209ENST00000561689 KDM3BQ7LBC6 1761 aa27.08■■□□□ 1.93
CLN3-209ENST00000561689 VIRMAQ69YN4 1812 aaKnown RBP27.08■■□□□ 1.93
CLN3-209ENST00000561689 CABP4P57796 275 aa27.08■■□□□ 1.92
CLN3-209ENST00000561689 HDGFL1Q5TGJ6 251 aa27.08■■□□□ 1.92
CLN3-209ENST00000561689 SCN11AQ9UI33 1791 aa27.07■■□□□ 1.92
CLN3-209ENST00000561689 EIF2S2P20042 333 aaKnown RBP27.06■■□□□ 1.92
CLN3-209ENST00000561689 G2E3Q7L622 706 aa27.06■■□□□ 1.92
CLN3-209ENST00000561689 HSPA1LP34931 641 aa27.06■■□□□ 1.92
CLN3-209ENST00000561689 NKX1-1Q15270 411 aaPredicted RBP27.06■■□□□ 1.92
CLN3-209ENST00000561689 ZNF790Q6PG37 636 aa27.06■■□□□ 1.92
CLN3-209ENST00000561689 C8orf37Q96NL8 207 aa27.06■■□□□ 1.92
CLN3-209ENST00000561689 DDX19BQ9UMR2 479 aa27.06■■□□□ 1.92
CLN3-209ENST00000561689 ABCC4O15439 1325 aa27.05■■□□□ 1.92
CLN3-209ENST00000561689 DISP2A7MBM2 1401 aa27.05■■□□□ 1.92
CLN3-209ENST00000561689 SIPA1L3O60292 1781 aaPredicted RBP27.04■■□□□ 1.92
CLN3-209ENST00000561689 HOXB7P09629 217 aa27.04■■□□□ 1.92
CLN3-209ENST00000561689 SPATA31A1Q5TZJ5 1347 aa27.04■■□□□ 1.92
CLN3-209ENST00000561689 SLIT2O94813 1529 aa27.04■■□□□ 1.92
CLN3-209ENST00000561689 PTPRCP08575 1304 aa27.04■■□□□ 1.92
CLN3-209ENST00000561689 MRC1P22897 1456 aa27.03■■□□□ 1.92
CLN3-209ENST00000561689 GIGYF1O75420 1035 aaPredicted RBP27.03■■□□□ 1.92
CLN3-209ENST00000561689 AAMPQ13685 434 aa27.03■■□□□ 1.92
CLN3-209ENST00000561689 NGLY1Q96IV0 654 aa27.03■■□□□ 1.92
CLN3-209ENST00000561689 PRAMEF22A3QJZ6 481 aa27.02■■□□□ 1.92
CLN3-209ENST00000561689 CCDC9Q9Y3X0 531 aaKnown RBP27.02■■□□□ 1.92
CLN3-209ENST00000561689 TSHZ2Q9NRE2 1034 aa27.02■■□□□ 1.92
CLN3-209ENST00000561689 HEG1Q9ULI3 1381 aa27.02■■□□□ 1.92
CLN3-209ENST00000561689 ERVV-2B6SEH9 535 aa27.01■■□□□ 1.91
CLN3-209ENST00000561689 PCDHB15Q9Y5E8 787 aa27.01■■□□□ 1.91
CLN3-209ENST00000561689 NRAPQ86VF7 1730 aa27.01■■□□□ 1.91
CLN3-209ENST00000561689 SPATA31A6Q5VVP1 1343 aa27■■□□□ 1.91
CLN3-209ENST00000561689 KDM2BQ8NHM5 1336 aa27■■□□□ 1.91
CLN3-209ENST00000561689 RGS12O14924 1447 aa27■■□□□ 1.91
CLN3-209ENST00000561689 SPATA31A5Q5VU36 1347 aa27■■□□□ 1.91
CLN3-209ENST00000561689 SPATA31A7Q8IWB4 1347 aa27■■□□□ 1.91
CLN3-209ENST00000561689 SHANK3Q9BYB0 1731 aa27■■□□□ 1.91
CLN3-209ENST00000561689 EXOC5O00471 708 aa26.99■■□□□ 1.91
CLN3-209ENST00000561689 FLIIQ13045 1269 aa26.99■■□□□ 1.91
CLN3-209ENST00000561689 UNC5CLQ8IV45 518 aa26.99■■□□□ 1.91
CLN3-209ENST00000561689 TTC5Q8N0Z6 440 aa26.99■■□□□ 1.91
CLN3-209ENST00000561689 ZNF496Q96IT1 587 aaPredicted RBP26.98■■□□□ 1.91
CLN3-209ENST00000561689 CHPF2Q9P2E5 772 aa26.98■■□□□ 1.91
CLN3-209ENST00000561689 THRAP3Q9Y2W1 955 aaKnown RBP26.98■■□□□ 1.91
CLN3-209ENST00000561689 IGHDP01880 384 aa26.98■■□□□ 1.91
CLN3-209ENST00000561689 CENPQQ7L2Z9 268 aaPredicted RBP26.97■■□□□ 1.91
CLN3-209ENST00000561689 ZBTB40Q9NUA8 1239 aa26.97■■□□□ 1.91
CLN3-209ENST00000561689 LRP6O75581 1613 aa26.96■■□□□ 1.91
CLN3-209ENST00000561689 F6X3S4 739 aa26.96■■□□□ 1.91
CLN3-209ENST00000561689 ZBTB7BO15156 539 aaPredicted RBP26.96■■□□□ 1.91
CLN3-209ENST00000561689 FKBP5Q13451 457 aaPredicted RBP26.96■■□□□ 1.91
CLN3-209ENST00000561689 CHMP4AQ9BY43 222 aa26.96■■□□□ 1.91
CLN3-209ENST00000561689 CDCA7Q9BWT1 371 aaPredicted RBP26.95■■□□□ 1.91
CLN3-209ENST00000561689 PHAXQ9H814 394 aaKnown RBP26.95■■□□□ 1.91
CLN3-209ENST00000561689 INTS3Q68E01 1043 aaKnown RBP26.95■■□□□ 1.9
CLN3-209ENST00000561689 BCL9LQ86UU0 1499 aa26.94■■□□□ 1.9
CLN3-209ENST00000561689 NWD2Q9ULI1 1742 aa26.94■■□□□ 1.9
CLN3-209ENST00000561689 ANXA1P04083 346 aa26.94■■□□□ 1.9
CLN3-209ENST00000561689 SLC4A10Q6U841 1118 aa26.93■■□□□ 1.9
CLN3-209ENST00000561689 FMNL2Q96PY5 1086 aa26.93■■□□□ 1.9
CLN3-209ENST00000561689 FNBP4Q8N3X1 1017 aaPredicted RBP26.93■■□□□ 1.9
CLN3-209ENST00000561689 DBF4Q9UBU7 674 aaPredicted RBP26.92■■□□□ 1.9
CLN3-209ENST00000561689 DDB1Q16531 1140 aa26.91■■□□□ 1.9
CLN3-209ENST00000561689 TMOD3Q9NYL9 352 aa26.91■■□□□ 1.9
CLN3-209ENST00000561689 TNS2Q63HR2 1409 aa26.91■■□□□ 1.9
CLN3-209ENST00000561689 SNRPA1P09661 255 aaKnown RBP26.9■■□□□ 1.9
CLN3-209ENST00000561689 PROSER3Q2NL68 480 aa26.9■■□□□ 1.9
CLN3-209ENST00000561689 MEX3CQ5U5Q3 659 aaKnown RBP26.9■■□□□ 1.9
CLN3-209ENST00000561689 BARGINQ6ZT62 677 aa26.9■■□□□ 1.9
CLN3-209ENST00000561689 VPS72Q15906 364 aa26.89■■□□□ 1.9
CLN3-209ENST00000561689 SKAP1Q86WV1 359 aa26.89■■□□□ 1.9
CLN3-209ENST00000561689 CHMP4BQ9H444 224 aaKnown RBP26.89■■□□□ 1.9
CLN3-209ENST00000561689 USP21Q9UK80 565 aa26.89■■□□□ 1.9
CLN3-209ENST00000561689 C1orf115Q9H7X2 142 aa26.88■■□□□ 1.89
CLN3-209ENST00000561689 USP16Q9Y5T5 823 aa26.88■■□□□ 1.89
CLN3-209ENST00000561689 FAM98CQ17RN3 349 aaKnown RBP26.88■■□□□ 1.89
CLN3-209ENST00000561689 PIGBQ92521 554 aa26.88■■□□□ 1.89
CLN3-209ENST00000561689 RWDD1Q9H446 243 aaPredicted RBP26.87■■□□□ 1.89
CLN3-209ENST00000561689 TOGARAM1Q9Y4F4 1720 aa26.86■■□□□ 1.89
CLN3-209ENST00000561689 WNK3Q9BYP7 1800 aa26.86■■□□□ 1.89
CLN3-209ENST00000561689 PTCD1O75127 700 aaKnown RBP26.86■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms