RNA–Protein interactions for RNA: ENST00000561431.1

LRRC28-222, Transcript of leucine rich repeat containing 28, human

TSL 3

Gene LRRC28, Length 754 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LRRC28-222	ENST00000561431	DBN1	Q16643	649 aa		7.21	□□□□□ -1.26
LRRC28-222	ENST00000561431	DZIP3	Q86Y13	1208 aa	Known RBP	7.21	□□□□□ -1.26
LRRC28-222	ENST00000561431	ADAM32	Q8TC27	787 aa		7.21	□□□□□ -1.26
LRRC28-222	ENST00000561431	PSMG3-AS1	Q96PY0	264 aa		7.21	□□□□□ -1.26
LRRC28-222	ENST00000561431	KRTAP9-2	Q9BYQ4	174 aa		7.21	□□□□□ -1.26
LRRC28-222	ENST00000561431	LRRC4B	Q9NT99	713 aa		7.21	□□□□□ -1.26
LRRC28-222	ENST00000561431	NACAD	O15069	1562 aa		7.2	□□□□□ -1.26
LRRC28-222	ENST00000561431	KRBA1	A5PL33	1030 aa		7.2	□□□□□ -1.26
LRRC28-222	ENST00000561431	BAG6	P46379	1132 aa		7.2	□□□□□ -1.26
LRRC28-222	ENST00000561431	RNF144A	P50876	292 aa	Predicted RBP	7.2	□□□□□ -1.26
LRRC28-222	ENST00000561431	SLFNL1	Q499Z3	407 aa		7.2	□□□□□ -1.26
LRRC28-222	ENST00000561431	FOXR1	Q6PIV2	292 aa		7.2	□□□□□ -1.26
LRRC28-222	ENST00000561431	ADAMTS19	Q8TE59	1207 aa		7.2	□□□□□ -1.26
LRRC28-222	ENST00000561431	ACIN1	Q9UKV3	1341 aa	Known RBP	7.2	□□□□□ -1.26
LRRC28-222	ENST00000561431	ERVH48-1	M5A8F1	160 aa		7.19	□□□□□ -1.26
LRRC28-222	ENST00000561431	RAB15	P59190	212 aa		7.19	□□□□□ -1.26
LRRC28-222	ENST00000561431	MCCD1	P59942	119 aa	Predicted RBP	7.19	□□□□□ -1.26
LRRC28-222	ENST00000561431	NBPF20	Q3BBV1	942 aa		7.19	□□□□□ -1.26
LRRC28-222	ENST00000561431	TFIP11	Q9UBB9	837 aa	Known RBP	7.19	□□□□□ -1.26
LRRC28-222	ENST00000561431	LMOD1	P29536	600 aa	Predicted RBP	7.18	□□□□□ -1.26
LRRC28-222	ENST00000561431	SNRPN	P63162	240 aa	Known RBP	7.18	□□□□□ -1.26
LRRC28-222	ENST00000561431	RIPOR1	Q6ZS17	1223 aa		7.18	□□□□□ -1.26
LRRC28-222	ENST00000561431	GTPBP3	Q969Y2	492 aa	Known RBP	7.18	□□□□□ -1.26
LRRC28-222	ENST00000561431	PPP1R12C	Q9BZL4	782 aa		7.18	□□□□□ -1.26
LRRC28-222	ENST00000561431	KRTAP9-6	A0A140TA67	174 aa		7.17	□□□□□ -1.26
LRRC28-222	ENST00000561431	PALM3	A6NDB9	673 aa	Predicted RBP	7.17	□□□□□ -1.26
LRRC28-222	ENST00000561431	OIP5	O43482	229 aa		7.17	□□□□□ -1.26
LRRC28-222	ENST00000561431	FURIN	P09958	794 aa		7.17	□□□□□ -1.26
LRRC28-222	ENST00000561431	SKI	P12755	728 aa		7.17	□□□□□ -1.26
LRRC28-222	ENST00000561431	ZCCHC6	Q5VYS8	1495 aa	Known RBP	7.17	□□□□□ -1.26
LRRC28-222	ENST00000561431	MYO15B	Q96JP2	1530 aa		7.17	□□□□□ -1.26
LRRC28-222	ENST00000561431	RNF135	Q8IUD6	432 aa		7.16	□□□□□ -1.26
LRRC28-222	ENST00000561431	CEP126	Q9P2H0	1117 aa		7.16	□□□□□ -1.26
LRRC28-222	ENST00000561431	DYRK1B	Q9Y463	629 aa		7.16	□□□□□ -1.26
LRRC28-222	ENST00000561431	ESPN	B1AK53	854 aa		7.15	□□□□□ -1.26
LRRC28-222	ENST00000561431	MX2	P20592	715 aa		7.15	□□□□□ -1.26
LRRC28-222	ENST00000561431	TBC1D9	Q6ZT07	1266 aa		7.15	□□□□□ -1.26
LRRC28-222	ENST00000561431		H7C1W4	665 aa		7.14	□□□□□ -1.27
LRRC28-222	ENST00000561431	ATP9B	O43861	1147 aa		7.14	□□□□□ -1.27
LRRC28-222	ENST00000561431	PPP1R15A	O75807	674 aa	Predicted RBP	7.14	□□□□□ -1.27
LRRC28-222	ENST00000561431	COL8A1	P27658	744 aa		7.14	□□□□□ -1.27
LRRC28-222	ENST00000561431	CDCA8	Q53HL2	280 aa		7.14	□□□□□ -1.27
LRRC28-222	ENST00000561431	TRERF1	Q96PN7	1200 aa		7.14	□□□□□ -1.27
LRRC28-222	ENST00000561431	CYLD	Q9NQC7	956 aa		7.14	□□□□□ -1.27
LRRC28-222	ENST00000561431	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	7.13	□□□□□ -1.27
LRRC28-222	ENST00000561431	SHISA8	B8ZZ34	492 aa		7.13	□□□□□ -1.27
LRRC28-222	ENST00000561431	PDIA4	P13667	645 aa	Known RBP	7.13	□□□□□ -1.27
LRRC28-222	ENST00000561431	GPC1	P35052	558 aa		7.13	□□□□□ -1.27
LRRC28-222	ENST00000561431	PBXIP1	Q96AQ6	731 aa		7.13	□□□□□ -1.27
LRRC28-222	ENST00000561431	UCN2	Q96RP3	112 aa		7.13	□□□□□ -1.27
LRRC28-222	ENST00000561431	GAS2L1	Q99501	681 aa	Predicted RBP	7.13	□□□□□ -1.27
LRRC28-222	ENST00000561431	OXCT2	Q9BYC2	517 aa	Predicted RBP	7.13	□□□□□ -1.27
LRRC28-222	ENST00000561431	NSFL1C	Q9UNZ2	370 aa	Known RBP	7.13	□□□□□ -1.27
LRRC28-222	ENST00000561431	PIK3CD	O00329	1044 aa		7.12	□□□□□ -1.27
LRRC28-222	ENST00000561431	CFAP70	Q5T0N1	1121 aa		7.12	□□□□□ -1.27
LRRC28-222	ENST00000561431	RNF20	Q5VTR2	975 aa		7.12	□□□□□ -1.27
LRRC28-222	ENST00000561431	ALYREF	Q86V81	257 aa	Known RBP	7.12	□□□□□ -1.27
LRRC28-222	ENST00000561431	ESF1	Q9H501	851 aa	Known RBP	7.12	□□□□□ -1.27
LRRC28-222	ENST00000561431	MKL2	Q9ULH7	1088 aa		7.12	□□□□□ -1.27
LRRC28-222	ENST00000561431	MAFB	Q9Y5Q3	323 aa	Predicted RBP	7.12	□□□□□ -1.27
LRRC28-222	ENST00000561431	DCAF1	Q9Y4B6	1507 aa		7.11	□□□□□ -1.27
LRRC28-222	ENST00000561431	USP17L5	A8MUK1	530 aa		7.11	□□□□□ -1.27
LRRC28-222	ENST00000561431	ATP5J2-PTCD1	G3V325	749 aa		7.11	□□□□□ -1.27
LRRC28-222	ENST00000561431	MEN1	O00255	615 aa		7.11	□□□□□ -1.27
LRRC28-222	ENST00000561431	POU4F2	Q12837	409 aa		7.11	□□□□□ -1.27
LRRC28-222	ENST00000561431	DEPDC4	Q8N2C3	294 aa		7.11	□□□□□ -1.27
LRRC28-222	ENST00000561431	NFATC2IP	Q8NCF5	419 aa		7.11	□□□□□ -1.27
LRRC28-222	ENST00000561431	VRTN	Q9H8Y1	702 aa		7.11	□□□□□ -1.27
LRRC28-222	ENST00000561431	USP17L3	A6NCW0	530 aa		7.1	□□□□□ -1.27
LRRC28-222	ENST00000561431	USP17L4	A6NCW7	530 aa		7.1	□□□□□ -1.27
LRRC28-222	ENST00000561431	GIGYF1	O75420	1035 aa	Predicted RBP	7.1	□□□□□ -1.27
LRRC28-222	ENST00000561431	CSB-PGBD3	P0DP91	1061 aa		7.1	□□□□□ -1.27
LRRC28-222	ENST00000561431	OXLD1	Q5BKU9	147 aa		7.1	□□□□□ -1.27
LRRC28-222	ENST00000561431	USP17L2	Q6R6M4	530 aa		7.1	□□□□□ -1.27
LRRC28-222	ENST00000561431	C1orf229	Q6ZS94	237 aa	Predicted RBP	7.1	□□□□□ -1.27
LRRC28-222	ENST00000561431	USP17L1	Q7RTZ2	530 aa		7.1	□□□□□ -1.27
LRRC28-222	ENST00000561431	SEPT12	Q8IYM1	358 aa		7.1	□□□□□ -1.27
LRRC28-222	ENST00000561431	PLPP7	Q8NBV4	271 aa		7.1	□□□□□ -1.27
LRRC28-222	ENST00000561431	DOLK	Q9UPQ8	538 aa		7.1	□□□□□ -1.27
LRRC28-222	ENST00000561431		A0A1W2PRU2	124 aa		7.09	□□□□□ -1.27
LRRC28-222	ENST00000561431	MAP2K3	P46734	347 aa		7.09	□□□□□ -1.27
LRRC28-222	ENST00000561431	EML3	Q32P44	896 aa		7.09	□□□□□ -1.27
LRRC28-222	ENST00000561431	NBPF10	Q6P3W6	841 aa	Known RBP	7.09	□□□□□ -1.27
LRRC28-222	ENST00000561431	NBPF15	Q8N660	670 aa		7.09	□□□□□ -1.27
LRRC28-222	ENST00000561431	UNC13A	Q9UPW8	1703 aa		7.09	□□□□□ -1.27
LRRC28-222	ENST00000561431	THBS1	P07996	1170 aa		7.08	□□□□□ -1.28
LRRC28-222	ENST00000561431	PDE4C	Q08493	712 aa		7.08	□□□□□ -1.28
LRRC28-222	ENST00000561431	MAP7D1	Q3KQU3	841 aa		7.08	□□□□□ -1.28
LRRC28-222	ENST00000561431	LARP1	Q6PKG0	1096 aa	Known RBP	7.08	□□□□□ -1.28
LRRC28-222	ENST00000561431	GRIP2	Q9C0E4	1043 aa		7.08	□□□□□ -1.28
LRRC28-222	ENST00000561431	NUCKS1	Q9H1E3	243 aa	Known RBP	7.08	□□□□□ -1.28
LRRC28-222	ENST00000561431	PCDHB11	Q9Y5F2	797 aa		7.08	□□□□□ -1.28
LRRC28-222	ENST00000561431	HOXB4	P17483	251 aa	Predicted RBP	7.07	□□□□□ -1.28
LRRC28-222	ENST00000561431	ITGB7	P26010	798 aa		7.07	□□□□□ -1.28
LRRC28-222	ENST00000561431	NCOA4	Q13772	614 aa		7.07	□□□□□ -1.28
LRRC28-222	ENST00000561431	SLC27A3	Q5K4L6	730 aa		7.07	□□□□□ -1.28
LRRC28-222	ENST00000561431	RETREG2	Q8NC44	543 aa		7.07	□□□□□ -1.28
LRRC28-222	ENST00000561431	KLRG1	Q96E93	195 aa		7.07	□□□□□ -1.28
LRRC28-222	ENST00000561431	SUV39H2	Q9H5I1	410 aa		7.07	□□□□□ -1.28
LRRC28-222	ENST00000561431	RRAGC	Q9HB90	399 aa		7.07	□□□□□ -1.28

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