RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 KRT24Q2M2I5 525 aa14.45□□□□□ -0.1
USP3-218ENST00000560202 SLC52A2Q9HAB3 445 aa14.45□□□□□ -0.1
USP3-218ENST00000560202 ALDH1L2Q3SY69 923 aa14.44□□□□□ -0.1
USP3-218ENST00000560202 SSH1Q8WYL5 1049 aa14.44□□□□□ -0.1
USP3-218ENST00000560202 BCL2L13Q9BXK5 485 aa14.44□□□□□ -0.1
USP3-218ENST00000560202 NFATC2IPQ8NCF5 419 aa14.43□□□□□ -0.1
USP3-218ENST00000560202 SMC4Q9NTJ3 1288 aa14.43□□□□□ -0.1
USP3-218ENST00000560202 AFF2P51816 1311 aa14.43□□□□□ -0.1
USP3-218ENST00000560202 SHANK3Q9BYB0 1731 aa14.43□□□□□ -0.1
USP3-218ENST00000560202 SCN11AQ9UI33 1791 aa14.42□□□□□ -0.1
USP3-218ENST00000560202 TNS2Q63HR2 1409 aa14.42□□□□□ -0.1
USP3-218ENST00000560202 ERVV-2B6SEH9 535 aa14.42□□□□□ -0.1
USP3-218ENST00000560202 KCNQ3O43525 872 aa14.42□□□□□ -0.1
USP3-218ENST00000560202 CABP4P57796 275 aa14.42□□□□□ -0.1
USP3-218ENST00000560202 DDB1Q16531 1140 aa14.42□□□□□ -0.1
USP3-218ENST00000560202 MRC1P22897 1456 aa14.42□□□□□ -0.1
USP3-218ENST00000560202 WNK3Q9BYP7 1800 aa14.41□□□□□ -0.1
USP3-218ENST00000560202 EIF4A1P60842 406 aaKnown RBP14.41□□□□□ -0.1
USP3-218ENST00000560202 FAM98CQ17RN3 349 aaKnown RBP14.41□□□□□ -0.1
USP3-218ENST00000560202 FRAT1Q92837 279 aaPredicted RBP14.41□□□□□ -0.1
USP3-218ENST00000560202 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.4□□□□□ -0.1
USP3-218ENST00000560202 CANXP27824 592 aaKnown RBP14.4□□□□□ -0.1
USP3-218ENST00000560202 ERICH6BQ5W0A0 696 aa14.4□□□□□ -0.1
USP3-218ENST00000560202 SOS1Q07889 1333 aaPredicted RBP14.4□□□□□ -0.1
USP3-218ENST00000560202 BRPF1P55201 1214 aaPredicted RBP14.39□□□□□ -0.11
USP3-218ENST00000560202 MRPL50Q8N5N7 158 aaKnown RBP14.39□□□□□ -0.11
USP3-218ENST00000560202 FBXO41Q8TF61 875 aa14.39□□□□□ -0.11
USP3-218ENST00000560202 SIPA1L3O60292 1781 aaPredicted RBP14.39□□□□□ -0.11
USP3-218ENST00000560202 VIRMAQ69YN4 1812 aaKnown RBP14.39□□□□□ -0.11
USP3-218ENST00000560202 C20orf194Q5TEA3 1177 aa14.39□□□□□ -0.11
USP3-218ENST00000560202 ZNF790Q6PG37 636 aa14.39□□□□□ -0.11
USP3-218ENST00000560202 GJD4Q96KN9 370 aaPredicted RBP14.39□□□□□ -0.11
USP3-218ENST00000560202 TRPC5Q9UL62 973 aaPredicted RBP14.39□□□□□ -0.11
USP3-218ENST00000560202 KDM3BQ7LBC6 1761 aa14.39□□□□□ -0.11
USP3-218ENST00000560202 TCERG1O14776 1098 aaKnown RBP14.38□□□□□ -0.11
USP3-218ENST00000560202 SLC39A6Q13433 755 aa14.38□□□□□ -0.11
USP3-218ENST00000560202 KIF16BQ96L93 1317 aa14.38□□□□□ -0.11
USP3-218ENST00000560202 ATRNO75882 1429 aa14.38□□□□□ -0.11
USP3-218ENST00000560202 HOXB7P09629 217 aa14.37□□□□□ -0.11
USP3-218ENST00000560202 PDE3AQ14432 1141 aa14.37□□□□□ -0.11
USP3-218ENST00000560202 ZKSCAN2Q63HK3 967 aa14.37□□□□□ -0.11
USP3-218ENST00000560202 NOB1Q9ULX3 412 aaKnown RBP14.37□□□□□ -0.11
USP3-218ENST00000560202 TTC5Q8N0Z6 440 aa14.36□□□□□ -0.11
USP3-218ENST00000560202 HEG1Q9ULI3 1381 aa14.36□□□□□ -0.11
USP3-218ENST00000560202 IPO8O15397 1037 aaKnown RBP14.36□□□□□ -0.11
USP3-218ENST00000560202 CCDC30Q5VVM6 783 aa14.36□□□□□ -0.11
USP3-218ENST00000560202 MARCH10Q8NA82 808 aaPredicted RBP14.36□□□□□ -0.11
USP3-218ENST00000560202 TMOD3Q9NYL9 352 aa14.36□□□□□ -0.11
USP3-218ENST00000560202 A0A0G2JS52 829 aa14.35□□□□□ -0.11
USP3-218ENST00000560202 GIGYF1O75420 1035 aaPredicted RBP14.35□□□□□ -0.11
USP3-218ENST00000560202 EXOC6Q8TAG9 804 aa14.35□□□□□ -0.11
USP3-218ENST00000560202 CRBNQ96SW2 442 aa14.35□□□□□ -0.11
USP3-218ENST00000560202 QTRT2Q9H974 415 aaKnown RBP14.35□□□□□ -0.11
USP3-218ENST00000560202 GLI3P10071 1580 aa14.35□□□□□ -0.11
USP3-218ENST00000560202 SLC4A2P04920 1241 aa14.34□□□□□ -0.11
USP3-218ENST00000560202 MS4A1P11836 297 aa14.34□□□□□ -0.11
USP3-218ENST00000560202 HDGFL1Q5TGJ6 251 aa14.34□□□□□ -0.11
USP3-218ENST00000560202 ATF7IPQ6VMQ6 1270 aa14.34□□□□□ -0.11
USP3-218ENST00000560202 ZNF496Q96IT1 587 aaPredicted RBP14.34□□□□□ -0.11
USP3-218ENST00000560202 CHMP4AQ9BY43 222 aa14.34□□□□□ -0.11
USP3-218ENST00000560202 TOGARAM1Q9Y4F4 1720 aa14.34□□□□□ -0.11
USP3-218ENST00000560202 ONECUT3O60422 494 aaPredicted RBP14.33□□□□□ -0.11
USP3-218ENST00000560202 TRIM27P14373 513 aa14.33□□□□□ -0.11
USP3-218ENST00000560202 PANK1Q8TE04 598 aa14.33□□□□□ -0.11
USP3-218ENST00000560202 PIGBQ92521 554 aa14.33□□□□□ -0.11
USP3-218ENST00000560202 ARHGAP45Q92619 1136 aa14.33□□□□□ -0.11
USP3-218ENST00000560202 NECTIN2Q92692 538 aa14.33□□□□□ -0.11
USP3-218ENST00000560202 FMNL2Q96PY5 1086 aa14.33□□□□□ -0.11
USP3-218ENST00000560202 STK31Q9BXU1 1019 aa14.33□□□□□ -0.11
USP3-218ENST00000560202 TSHZ2Q9NRE2 1034 aa14.33□□□□□ -0.11
USP3-218ENST00000560202 TNNQ9UQP3 1299 aa14.33□□□□□ -0.11
USP3-218ENST00000560202 EIF2S2P20042 333 aaKnown RBP14.33□□□□□ -0.12
USP3-218ENST00000560202 DZIP1LQ8IYY4 767 aaKnown RBP14.33□□□□□ -0.12
USP3-218ENST00000560202 CLUAP1Q96AJ1 413 aa14.33□□□□□ -0.12
USP3-218ENST00000560202 PRAMEF22A3QJZ6 481 aa14.32□□□□□ -0.12
USP3-218ENST00000560202 RLBP1P12271 317 aa14.32□□□□□ -0.12
USP3-218ENST00000560202 PRIM1P49642 420 aaKnown RBP14.32□□□□□ -0.12
USP3-218ENST00000560202 PPP4R2Q9NY27 417 aa14.32□□□□□ -0.12
USP3-218ENST00000560202 THSD7AQ9UPZ6 1657 aa14.32□□□□□ -0.12
USP3-218ENST00000560202 SNRPA1P09661 255 aaKnown RBP14.31□□□□□ -0.12
USP3-218ENST00000560202 FTSJ3Q8IY81 847 aaKnown RBP14.31□□□□□ -0.12
USP3-218ENST00000560202 SYTL4Q96C24 671 aaPredicted RBP14.31□□□□□ -0.12
USP3-218ENST00000560202 BCL9O00512 1426 aa14.31□□□□□ -0.12
USP3-218ENST00000560202 ZNF772Q68DY9 489 aaPredicted RBP14.3□□□□□ -0.12
USP3-218ENST00000560202 API5Q9BZZ5 524 aaKnown RBP14.3□□□□□ -0.12
USP3-218ENST00000560202 BCL11AQ9H165 835 aa14.3□□□□□ -0.12
USP3-218ENST00000560202 COG6Q9Y2V7 657 aa14.3□□□□□ -0.12
USP3-218ENST00000560202 PTPRCP08575 1304 aa14.3□□□□□ -0.12
USP3-218ENST00000560202 G2E3Q7L622 706 aa14.3□□□□□ -0.12
USP3-218ENST00000560202 SEPT12Q8IYM1 358 aa14.3□□□□□ -0.12
USP3-218ENST00000560202 ATG3Q9NT62 314 aa14.3□□□□□ -0.12
USP3-218ENST00000560202 ASAP1Q9ULH1 1129 aa14.3□□□□□ -0.12
USP3-218ENST00000560202 ACSBG1Q96GR2 724 aa14.29□□□□□ -0.12
USP3-218ENST00000560202 CHPF2Q9P2E5 772 aa14.29□□□□□ -0.12
USP3-218ENST00000560202 DBF4Q9UBU7 674 aaPredicted RBP14.29□□□□□ -0.12
USP3-218ENST00000560202 PAPPAQ13219 1627 aa14.29□□□□□ -0.12
USP3-218ENST00000560202 KCPQ6ZWJ8 1503 aa14.28□□□□□ -0.12
USP3-218ENST00000560202 PTCD1O75127 700 aaKnown RBP14.28□□□□□ -0.12
USP3-218ENST00000560202 FLIIQ13045 1269 aa14.27□□□□□ -0.12
USP3-218ENST00000560202 MVPQ14764 893 aaKnown RBP14.27□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms