RNA–Protein interactions for RNA: ENST00000559831.5

TPM1-221, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-221ENST00000559831 MRC1P22897 1456 aa13.55□□□□□ -0.24
TPM1-221ENST00000559831 ZNF853P0CG23 659 aa13.55□□□□□ -0.24
TPM1-221ENST00000559831 RXRBP28702 533 aa13.55□□□□□ -0.24
TPM1-221ENST00000559831 TRMT2AQ8IZ69 625 aaKnown RBP13.55□□□□□ -0.24
TPM1-221ENST00000559831 MARCH10Q8NA82 808 aaPredicted RBP13.55□□□□□ -0.24
TPM1-221ENST00000559831 MBIPQ9NS73 344 aa13.55□□□□□ -0.24
TPM1-221ENST00000559831 RGS17Q9UGC6 210 aaPredicted RBP13.55□□□□□ -0.24
TPM1-221ENST00000559831 ONECUT3O60422 494 aaPredicted RBP13.54□□□□□ -0.24
TPM1-221ENST00000559831 SLC52A2Q9HAB3 445 aa13.54□□□□□ -0.24
TPM1-221ENST00000559831 BTBD11A6QL63 1104 aa13.53□□□□□ -0.24
TPM1-221ENST00000559831 ERVV-2B6SEH9 535 aa13.53□□□□□ -0.24
TPM1-221ENST00000559831 CHL1O00533 1208 aa13.53□□□□□ -0.24
TPM1-221ENST00000559831 POTEAQ6S8J7 498 aa13.53□□□□□ -0.24
TPM1-221ENST00000559831 NFATC2IPQ8NCF5 419 aa13.53□□□□□ -0.24
TPM1-221ENST00000559831 EXOSC9Q06265 439 aaKnown RBP13.52□□□□□ -0.25
TPM1-221ENST00000559831 SYTL4Q96C24 671 aaPredicted RBP13.52□□□□□ -0.25
TPM1-221ENST00000559831 ACSBG1Q96GR2 724 aa13.52□□□□□ -0.25
TPM1-221ENST00000559831 TMOD3Q9NYL9 352 aa13.52□□□□□ -0.25
TPM1-221ENST00000559831 SBF2Q86WG5 1849 aa13.52□□□□□ -0.25
TPM1-221ENST00000559831 PAPPAQ13219 1627 aa13.51□□□□□ -0.25
TPM1-221ENST00000559831 FAM182BQ5T319 152 aa13.51□□□□□ -0.25
TPM1-221ENST00000559831 BABAM1Q9NWV8 329 aa13.51□□□□□ -0.25
TPM1-221ENST00000559831 KCNQ3O43525 872 aa13.5□□□□□ -0.25
TPM1-221ENST00000559831 SLC39A6Q13433 755 aa13.5□□□□□ -0.25
TPM1-221ENST00000559831 NHSQ6T4R5 1651 aa13.5□□□□□ -0.25
TPM1-221ENST00000559831 RGS12O14924 1447 aa13.49□□□□□ -0.25
TPM1-221ENST00000559831 ELL2O00472 640 aaPredicted RBP13.49□□□□□ -0.25
TPM1-221ENST00000559831 PRIM1P49642 420 aaKnown RBP13.49□□□□□ -0.25
TPM1-221ENST00000559831 KRT24Q2M2I5 525 aa13.49□□□□□ -0.25
TPM1-221ENST00000559831 ILDR2Q71H61 639 aa13.49□□□□□ -0.25
TPM1-221ENST00000559831 KRT27Q7Z3Y8 459 aa13.49□□□□□ -0.25
TPM1-221ENST00000559831 TTC5Q8N0Z6 440 aa13.49□□□□□ -0.25
TPM1-221ENST00000559831 UBR2Q8IWV8 1755 aa13.49□□□□□ -0.25
TPM1-221ENST00000559831 C8orf58Q8NAV2 365 aa13.48□□□□□ -0.25
TPM1-221ENST00000559831 BTAF1O14981 1849 aa13.48□□□□□ -0.25
TPM1-221ENST00000559831 C5P01031 1676 aa13.47□□□□□ -0.25
TPM1-221ENST00000559831 ZNF790Q6PG37 636 aa13.47□□□□□ -0.25
TPM1-221ENST00000559831 TSPYL6Q8N831 410 aa13.47□□□□□ -0.25
TPM1-221ENST00000559831 PIGBQ92521 554 aa13.47□□□□□ -0.25
TPM1-221ENST00000559831 RCAN3Q9UKA8 241 aa13.47□□□□□ -0.25
TPM1-221ENST00000559831 BCL9O00512 1426 aa13.47□□□□□ -0.25
TPM1-221ENST00000559831 EIF4A1P60842 406 aaKnown RBP13.46□□□□□ -0.25
TPM1-221ENST00000559831 TWISTNBQ3B726 338 aaPredicted RBP13.46□□□□□ -0.25
TPM1-221ENST00000559831 SOCS7O14512 581 aa13.45□□□□□ -0.26
TPM1-221ENST00000559831 KCNQ2O43526 872 aa13.45□□□□□ -0.26
TPM1-221ENST00000559831 ASAP1Q9ULH1 1129 aa13.45□□□□□ -0.26
TPM1-221ENST00000559831 LAMB4A4D0S4 1761 aa13.45□□□□□ -0.26
TPM1-221ENST00000559831 KCPQ6ZWJ8 1503 aa13.44□□□□□ -0.26
TPM1-221ENST00000559831 CT47B1P0C2W7 299 aaPredicted RBP13.44□□□□□ -0.26
TPM1-221ENST00000559831 ZNF496Q96IT1 587 aaPredicted RBP13.44□□□□□ -0.26
TPM1-221ENST00000559831 FMNL2Q96PY5 1086 aa13.44□□□□□ -0.26
TPM1-221ENST00000559831 TCERG1O14776 1098 aaKnown RBP13.43□□□□□ -0.26
TPM1-221ENST00000559831 PTCD1O75127 700 aaKnown RBP13.43□□□□□ -0.26
TPM1-221ENST00000559831 VAMP4O75379 141 aa13.43□□□□□ -0.26
TPM1-221ENST00000559831 FAM196AQ6ZSG2 479 aa13.43□□□□□ -0.26
TPM1-221ENST00000559831 RBM42Q9BTD8 480 aaKnown RBP13.43□□□□□ -0.26
TPM1-221ENST00000559831 ATG3Q9NT62 314 aa13.43□□□□□ -0.26
TPM1-221ENST00000559831 CACNA1FO60840 1977 aa13.43□□□□□ -0.26
TPM1-221ENST00000559831 PTF1AQ7RTS3 328 aa13.42□□□□□ -0.26
TPM1-221ENST00000559831 NECTIN2Q92692 538 aa13.42□□□□□ -0.26
TPM1-221ENST00000559831 BCL2L13Q9BXK5 485 aa13.42□□□□□ -0.26
TPM1-221ENST00000559831 SUPT16HQ9Y5B9 1047 aaKnown RBP13.42□□□□□ -0.26
TPM1-221ENST00000559831 PRAMEF22A3QJZ6 481 aa13.41□□□□□ -0.26
TPM1-221ENST00000559831 EIF2S2P20042 333 aaKnown RBP13.41□□□□□ -0.26
TPM1-221ENST00000559831 RARSP54136 660 aaKnown RBP13.41□□□□□ -0.26
TPM1-221ENST00000559831 SMC4Q9NTJ3 1288 aa13.41□□□□□ -0.26
TPM1-221ENST00000559831 HEG1Q9ULI3 1381 aa13.41□□□□□ -0.26
TPM1-221ENST00000559831 TJP1Q07157 1748 aa13.41□□□□□ -0.26
TPM1-221ENST00000559831 GIGYF1O75420 1035 aaPredicted RBP13.4□□□□□ -0.26
TPM1-221ENST00000559831 BCAR3O75815 825 aa13.4□□□□□ -0.26
TPM1-221ENST00000559831 HOXB7P09629 217 aa13.4□□□□□ -0.26
TPM1-221ENST00000559831 SNRPA1P09661 255 aaKnown RBP13.4□□□□□ -0.26
TPM1-221ENST00000559831 HDGFL1Q5TGJ6 251 aa13.4□□□□□ -0.26
TPM1-221ENST00000559831 SSH1Q8WYL5 1049 aa13.4□□□□□ -0.26
TPM1-221ENST00000559831 SMARCC1Q92922 1105 aaPredicted RBP13.4□□□□□ -0.26
TPM1-221ENST00000559831 PALLDQ8WX93 1383 aa13.4□□□□□ -0.26
TPM1-221ENST00000559831 SOS1Q07889 1333 aaPredicted RBP13.39□□□□□ -0.27
TPM1-221ENST00000559831 TRIM37O94972 964 aa13.39□□□□□ -0.27
TPM1-221ENST00000559831 CCDC30Q5VVM6 783 aa13.39□□□□□ -0.27
TPM1-221ENST00000559831 ZNF428Q96B54 188 aa13.39□□□□□ -0.27
TPM1-221ENST00000559831 BCL11BQ9C0K0 894 aaPredicted RBP13.39□□□□□ -0.27
TPM1-221ENST00000559831 LY75O60449 1722 aa13.39□□□□□ -0.27
TPM1-221ENST00000559831 CANXP27824 592 aaKnown RBP13.38□□□□□ -0.27
TPM1-221ENST00000559831 ALDH1L2Q3SY69 923 aa13.38□□□□□ -0.27
TPM1-221ENST00000559831 STK31Q9BXU1 1019 aa13.38□□□□□ -0.27
TPM1-221ENST00000559831 TNS1Q9HBL0 1735 aaKnown RBP13.37□□□□□ -0.27
TPM1-221ENST00000559831 RRP1P56182 461 aaKnown RBP13.37□□□□□ -0.27
TPM1-221ENST00000559831 MRPL50Q8N5N7 158 aaKnown RBP13.37□□□□□ -0.27
TPM1-221ENST00000559831 FRAT1Q92837 279 aaPredicted RBP13.37□□□□□ -0.27
TPM1-221ENST00000559831 PLIN1O60240 522 aa13.36□□□□□ -0.27
TPM1-221ENST00000559831 ATP6V1AP38606 617 aa13.36□□□□□ -0.27
TPM1-221ENST00000559831 DNAJC10Q8IXB1 793 aa13.36□□□□□ -0.27
TPM1-221ENST00000559831 CHMP4AQ9BY43 222 aa13.36□□□□□ -0.27
TPM1-221ENST00000559831 CHPF2Q9P2E5 772 aa13.36□□□□□ -0.27
TPM1-221ENST00000559831 USP16Q9Y5T5 823 aa13.36□□□□□ -0.27
TPM1-221ENST00000559831 COL5A3P25940 1745 aaPredicted RBP13.36□□□□□ -0.27
TPM1-221ENST00000559831 CICQ96RK0 1608 aaPredicted RBP13.35□□□□□ -0.27
TPM1-221ENST00000559831 ZNF831Q5JPB2 1677 aa13.35□□□□□ -0.27
TPM1-221ENST00000559831 TAF1LQ8IZX4 1826 aa13.35□□□□□ -0.27
TPM1-221ENST00000559831 LOC102724428A0A0B4J2F2 783 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms