RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 MTHFSDQ2M296 383 aaKnown RBP16.88■□□□□ 0.29
SMAD3-208ENST00000558827 SLC4A9Q96Q91 983 aa16.88■□□□□ 0.29
SMAD3-208ENST00000558827 SYT17Q9BSW7 474 aa16.88■□□□□ 0.29
SMAD3-208ENST00000558827 KDRP35968 1356 aa16.88■□□□□ 0.29
SMAD3-208ENST00000558827 TAF1LQ8IZX4 1826 aa16.87■□□□□ 0.29
SMAD3-208ENST00000558827 PTCD1O75127 700 aaKnown RBP16.87■□□□□ 0.29
SMAD3-208ENST00000558827 POLD1P28340 1107 aa16.87■□□□□ 0.29
SMAD3-208ENST00000558827 SLC16A10Q8TF71 515 aa16.87■□□□□ 0.29
SMAD3-208ENST00000558827 NPC1L1Q9UHC9 1359 aa16.87■□□□□ 0.29
SMAD3-208ENST00000558827 PPP2R1AP30153 589 aa16.86■□□□□ 0.29
SMAD3-208ENST00000558827 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.85■□□□□ 0.29
SMAD3-208ENST00000558827 GNPATO15228 680 aa16.85■□□□□ 0.29
SMAD3-208ENST00000558827 AKAP4Q5JQC9 854 aa16.85■□□□□ 0.29
SMAD3-208ENST00000558827 C4BP0C0L5 1744 aa16.84■□□□□ 0.29
SMAD3-208ENST00000558827 DCAF8L1A6NGE4 600 aa16.84■□□□□ 0.29
SMAD3-208ENST00000558827 COL3A1P02461 1466 aaPredicted RBP16.84■□□□□ 0.29
SMAD3-208ENST00000558827 QSER1Q2KHR3 1735 aa16.84■□□□□ 0.29
SMAD3-208ENST00000558827 RNMTO43148 476 aaKnown RBP16.83■□□□□ 0.28
SMAD3-208ENST00000558827 SLC39A6Q13433 755 aa16.83■□□□□ 0.28
SMAD3-208ENST00000558827 PELP1Q8IZL8 1130 aaKnown RBP16.83■□□□□ 0.28
SMAD3-208ENST00000558827 CFAP53Q96M91 514 aa16.83■□□□□ 0.28
SMAD3-208ENST00000558827 FLAD1Q8NFF5 587 aa16.81■□□□□ 0.28
SMAD3-208ENST00000558827 NLGN2Q8NFZ4 835 aa16.81■□□□□ 0.28
SMAD3-208ENST00000558827 U2AF1L5P0DN76 240 aaPredicted RBP16.8■□□□□ 0.28
SMAD3-208ENST00000558827 PRKAR2BP31323 418 aa16.8■□□□□ 0.28
SMAD3-208ENST00000558827 U2AF1Q01081 240 aaKnown RBP eCLIP16.8■□□□□ 0.28
SMAD3-208ENST00000558827 DDX10Q13206 875 aaKnown RBP16.8■□□□□ 0.28
SMAD3-208ENST00000558827 PHACTR3Q96KR7 559 aa16.8■□□□□ 0.28
SMAD3-208ENST00000558827 SLC52A2Q9HAB3 445 aa16.8■□□□□ 0.28
SMAD3-208ENST00000558827 UBR3Q6ZT12 1888 aa16.8■□□□□ 0.28
SMAD3-208ENST00000558827 PLEKHG2Q9H7P9 1386 aa16.79■□□□□ 0.28
SMAD3-208ENST00000558827 WWC3Q9ULE0 1092 aa16.79■□□□□ 0.28
SMAD3-208ENST00000558827 SCN11AQ9UI33 1791 aa16.79■□□□□ 0.28
SMAD3-208ENST00000558827 YY1P25490 414 aa16.77■□□□□ 0.28
SMAD3-208ENST00000558827 SSFA2P28290 1259 aa16.77■□□□□ 0.28
SMAD3-208ENST00000558827 GPR162Q16538 588 aa16.77■□□□□ 0.28
SMAD3-208ENST00000558827 TRAPPC3LQ5T215 181 aa16.77■□□□□ 0.28
SMAD3-208ENST00000558827 DNAJC10Q8IXB1 793 aa16.77■□□□□ 0.28
SMAD3-208ENST00000558827 IL17REQ8NFR9 667 aa16.77■□□□□ 0.28
SMAD3-208ENST00000558827 NUDCQ9Y266 331 aa16.77■□□□□ 0.28
SMAD3-208ENST00000558827 RTCBQ9Y3I0 505 aaKnown RBP16.77■□□□□ 0.28
SMAD3-208ENST00000558827 VIRMAQ69YN4 1812 aaKnown RBP16.76■□□□□ 0.27
SMAD3-208ENST00000558827 HMGB2P26583 209 aaKnown RBP16.76■□□□□ 0.27
SMAD3-208ENST00000558827 RSPH6AQ9H0K4 717 aa16.76■□□□□ 0.27
SMAD3-208ENST00000558827 MYH14Q7Z406 1995 aaKnown RBP16.75■□□□□ 0.27
SMAD3-208ENST00000558827 GNAT3A8MTJ3 354 aa16.75■□□□□ 0.27
SMAD3-208ENST00000558827 CRKLP46109 303 aaKnown RBP16.75■□□□□ 0.27
SMAD3-208ENST00000558827 GAS2L2Q8NHY3 880 aa16.75■□□□□ 0.27
SMAD3-208ENST00000558827 ARHGEF1Q92888 912 aaKnown RBP16.75■□□□□ 0.27
SMAD3-208ENST00000558827 COL24A1Q17RW2 1714 aa16.74■□□□□ 0.27
SMAD3-208ENST00000558827 RPS6KA4O75676 772 aa16.73■□□□□ 0.27
SMAD3-208ENST00000558827 TEFQ10587 303 aa16.73■□□□□ 0.27
SMAD3-208ENST00000558827 RC3H1Q5TC82 1133 aaKnown RBP16.73■□□□□ 0.27
SMAD3-208ENST00000558827 SRP68Q9UHB9 627 aaKnown RBP16.73■□□□□ 0.27
SMAD3-208ENST00000558827 MAP3K5Q99683 1374 aa16.73■□□□□ 0.27
SMAD3-208ENST00000558827 CNTNAP4Q9C0A0 1308 aa16.72■□□□□ 0.27
SMAD3-208ENST00000558827 MMP10P09238 476 aa16.72■□□□□ 0.27
SMAD3-208ENST00000558827 RFC4P35249 363 aa16.72■□□□□ 0.27
SMAD3-208ENST00000558827 DCTN1Q14203 1278 aa16.72■□□□□ 0.27
SMAD3-208ENST00000558827 INTS5Q6P9B9 1019 aaKnown RBP16.72■□□□□ 0.27
SMAD3-208ENST00000558827 KCNQ3O43525 872 aa16.71■□□□□ 0.27
SMAD3-208ENST00000558827 MCM10Q7L590 875 aa16.71■□□□□ 0.27
SMAD3-208ENST00000558827 COL5A3P25940 1745 aaPredicted RBP16.7■□□□□ 0.26
SMAD3-208ENST00000558827 TJP1Q07157 1748 aa16.7■□□□□ 0.26
SMAD3-208ENST00000558827 YBX3P16989 372 aaKnown RBP eCLIP16.69■□□□□ 0.26
SMAD3-208ENST00000558827 TTC5Q8N0Z6 440 aa16.69■□□□□ 0.26
SMAD3-208ENST00000558827 CCDC87Q9NVE4 849 aa16.69■□□□□ 0.26
SMAD3-208ENST00000558827 FCHSD2O94868 740 aa16.68■□□□□ 0.26
SMAD3-208ENST00000558827 CYP19A1P11511 503 aaPredicted RBP16.68■□□□□ 0.26
SMAD3-208ENST00000558827 GYS1P13807 737 aa16.68■□□□□ 0.26
SMAD3-208ENST00000558827 CANXP27824 592 aaKnown RBP16.68■□□□□ 0.26
SMAD3-208ENST00000558827 ZNF496Q96IT1 587 aaPredicted RBP16.68■□□□□ 0.26
SMAD3-208ENST00000558827 MRC1P22897 1456 aa16.67■□□□□ 0.26
SMAD3-208ENST00000558827 KCPQ6ZWJ8 1503 aa16.67■□□□□ 0.26
SMAD3-208ENST00000558827 FKBP8Q14318 412 aa16.67■□□□□ 0.26
SMAD3-208ENST00000558827 RTF1Q92541 710 aaKnown RBP16.67■□□□□ 0.26
SMAD3-208ENST00000558827 ZBTB1Q9Y2K1 713 aa16.67■□□□□ 0.26
SMAD3-208ENST00000558827 CD2APQ9Y5K6 639 aa16.67■□□□□ 0.26
SMAD3-208ENST00000558827 ZNF831Q5JPB2 1677 aa16.66■□□□□ 0.26
SMAD3-208ENST00000558827 BTBD11A6QL63 1104 aa16.66■□□□□ 0.26
SMAD3-208ENST00000558827 ADRA2BP18089 450 aa16.66■□□□□ 0.26
SMAD3-208ENST00000558827 ZNF790Q6PG37 636 aa16.66■□□□□ 0.26
SMAD3-208ENST00000558827 NLGN1Q8N2Q7 840 aa16.66■□□□□ 0.26
SMAD3-208ENST00000558827 MIS18AQ9NYP9 233 aa16.66■□□□□ 0.26
SMAD3-208ENST00000558827 ZNF330Q9Y3S2 320 aaPredicted RBP16.66■□□□□ 0.26
SMAD3-208ENST00000558827 ADAMTS7Q9UKP4 1686 aa16.65■□□□□ 0.26
SMAD3-208ENST00000558827 USPL1Q5W0Q7 1092 aa16.65■□□□□ 0.26
SMAD3-208ENST00000558827 PIP4K2AP48426 406 aaPredicted RBP16.64■□□□□ 0.25
SMAD3-208ENST00000558827 THUMPD2Q9BTF0 503 aaKnown RBP16.64■□□□□ 0.25
SMAD3-208ENST00000558827 PARP3Q9Y6F1 533 aa16.64■□□□□ 0.25
SMAD3-208ENST00000558827 SOS1Q07889 1333 aaPredicted RBP16.64■□□□□ 0.25
SMAD3-208ENST00000558827 UTRNP46939 3433 aa16.63■□□□□ 0.25
SMAD3-208ENST00000558827 C4AP0C0L4 1744 aa16.63■□□□□ 0.25
SMAD3-208ENST00000558827 A0A0G2JLW4 131 aa16.63■□□□□ 0.25
SMAD3-208ENST00000558827 PRAMEF22A3QJZ6 481 aa16.63■□□□□ 0.25
SMAD3-208ENST00000558827 ZPR1O75312 459 aa16.63■□□□□ 0.25
SMAD3-208ENST00000558827 A1BGP04217 495 aa16.63■□□□□ 0.25
SMAD3-208ENST00000558827 RALBP1Q15311 655 aa16.63■□□□□ 0.25
SMAD3-208ENST00000558827 USP42Q9H9J4 1324 aaKnown RBP16.63■□□□□ 0.25
SMAD3-208ENST00000558827 NEFMP07197 916 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms