RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 COL14A1Q05707 1796 aaKnown RBP21.33■■□□□ 1
LDLR-206ENST00000557958 MEGF6O75095 1541 aa21.33■■□□□ 1
LDLR-206ENST00000557958 ABCC4O15439 1325 aa21.32■■□□□ 1
LDLR-206ENST00000557958 TAF7Q15545 349 aaPredicted RBP21.32■■□□□ 1
LDLR-206ENST00000557958 IL2RBP14784 551 aa21.32■■□□□ 1
LDLR-206ENST00000557958 MEX3CQ5U5Q3 659 aaKnown RBP21.32■■□□□ 1
LDLR-206ENST00000557958 PTPRCP08575 1304 aa21.31■■□□□ 1
LDLR-206ENST00000557958 ZBTB40Q9NUA8 1239 aa21.31■■□□□ 1
LDLR-206ENST00000557958 CEMIPQ8WUJ3 1361 aa21.31■■□□□ 1
LDLR-206ENST00000557958 FAM208AQ9UK61 1670 aaKnown RBP21.3■■□□□ 1
LDLR-206ENST00000557958 PDE4AP27815 886 aa21.3■■□□□ 1
LDLR-206ENST00000557958 HDAC1Q13547 482 aaPredicted RBP21.3■■□□□ 1
LDLR-206ENST00000557958 CHMP4AQ9BY43 222 aa21.3■■□□□ 1
LDLR-206ENST00000557958 PLEKHG2Q9H7P9 1386 aa21.29■■□□□ 1
LDLR-206ENST00000557958 SPATA31A6Q5VVP1 1343 aa21.29■■□□□ 1
LDLR-206ENST00000557958 OVOS2A0A0G2JMS6 1433 aa21.29■■□□□ 1
LDLR-206ENST00000557958 KRT24Q2M2I5 525 aa21.28■■□□□ 1
LDLR-206ENST00000557958 ZCRB1Q8TBF4 217 aaKnown RBP21.28■■□□□ 1
LDLR-206ENST00000557958 DDX54Q8TDD1 881 aaKnown RBP21.28■■□□□ 1
LDLR-206ENST00000557958 STK31Q9BXU1 1019 aa21.28■■□□□ 1
LDLR-206ENST00000557958 BACH2Q9BYV9 841 aa21.28■■□□□ 1
LDLR-206ENST00000557958 IFNL2Q8IZJ0 200 aa21.27■■□□□ 1
LDLR-206ENST00000557958 RNMTO43148 476 aaKnown RBP21.26■□□□□ 0.99
LDLR-206ENST00000557958 PHKG2P15735 406 aa21.26■□□□□ 0.99
LDLR-206ENST00000557958 RGS3P49796 1198 aa21.26■□□□□ 0.99
LDLR-206ENST00000557958 TEFQ10587 303 aa21.26■□□□□ 0.99
LDLR-206ENST00000557958 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.26■□□□□ 0.99
LDLR-206ENST00000557958 CCDC30Q5VVM6 783 aa21.26■□□□□ 0.99
LDLR-206ENST00000557958 CYP27B1O15528 508 aa21.24■□□□□ 0.99
LDLR-206ENST00000557958 ZBTB7BO15156 539 aaPredicted RBP21.24■□□□□ 0.99
LDLR-206ENST00000557958 SLC4A2P04920 1241 aa21.24■□□□□ 0.99
LDLR-206ENST00000557958 ANP32AP39687 249 aaKnown RBP21.24■□□□□ 0.99
LDLR-206ENST00000557958 PLCH1Q4KWH8 1693 aa21.23■□□□□ 0.99
LDLR-206ENST00000557958 INTS3Q68E01 1043 aaKnown RBP21.23■□□□□ 0.99
LDLR-206ENST00000557958 SKAP1Q86WV1 359 aa21.23■□□□□ 0.99
LDLR-206ENST00000557958 UNC5CLQ8IV45 518 aa21.23■□□□□ 0.99
LDLR-206ENST00000557958 FAM161AQ3B820 660 aa21.22■□□□□ 0.99
LDLR-206ENST00000557958 LRP6O75581 1613 aa21.22■□□□□ 0.99
LDLR-206ENST00000557958 HOXB7P09629 217 aa21.22■□□□□ 0.99
LDLR-206ENST00000557958 USP21Q9UK80 565 aa21.22■□□□□ 0.99
LDLR-206ENST00000557958 PCDH11XQ9BZA7 1347 aa21.21■□□□□ 0.99
LDLR-206ENST00000557958 PCDH11YQ9BZA8 1340 aa21.21■□□□□ 0.99
LDLR-206ENST00000557958 SPATA31A1Q5TZJ5 1347 aa21.21■□□□□ 0.99
LDLR-206ENST00000557958 BTBD11A6QL63 1104 aa21.2■□□□□ 0.98
LDLR-206ENST00000557958 PDZRN3Q9UPQ7 1066 aa21.2■□□□□ 0.98
LDLR-206ENST00000557958 SLIT2O94813 1529 aa21.19■□□□□ 0.98
LDLR-206ENST00000557958 RGS12O14924 1447 aa21.19■□□□□ 0.98
LDLR-206ENST00000557958 EXOC5O00471 708 aa21.19■□□□□ 0.98
LDLR-206ENST00000557958 HSP90AB1P08238 724 aaKnown RBP21.19■□□□□ 0.98
LDLR-206ENST00000557958 DCAF5Q96JK2 942 aa21.19■□□□□ 0.98
LDLR-206ENST00000557958 SMC5Q8IY18 1101 aa21.18■□□□□ 0.98
LDLR-206ENST00000557958 SPATA31A5Q5VU36 1347 aa21.18■□□□□ 0.98
LDLR-206ENST00000557958 SPATA31A7Q8IWB4 1347 aa21.18■□□□□ 0.98
LDLR-206ENST00000557958 NFATC2IPQ8NCF5 419 aa21.18■□□□□ 0.98
LDLR-206ENST00000557958 A0A0G2JS52 829 aa21.17■□□□□ 0.98
LDLR-206ENST00000557958 MSH5O43196 834 aa21.17■□□□□ 0.98
LDLR-206ENST00000557958 FNBP4Q8N3X1 1017 aaPredicted RBP21.17■□□□□ 0.98
LDLR-206ENST00000557958 PARP4Q9UKK3 1724 aaKnown RBP21.16■□□□□ 0.98
LDLR-206ENST00000557958 KCNQ3O43525 872 aa21.16■□□□□ 0.98
LDLR-206ENST00000557958 CCT4P50991 539 aaKnown RBP21.16■□□□□ 0.98
LDLR-206ENST00000557958 CABP4P57796 275 aa21.16■□□□□ 0.98
LDLR-206ENST00000557958 KDM3BQ7LBC6 1761 aa21.16■□□□□ 0.98
LDLR-206ENST00000557958 EIF4A1P60842 406 aaKnown RBP21.15■□□□□ 0.98
LDLR-206ENST00000557958 HDGFL1Q5TGJ6 251 aa21.15■□□□□ 0.98
LDLR-206ENST00000557958 GCC1Q96CN9 775 aa21.15■□□□□ 0.98
LDLR-206ENST00000557958 SLC52A2Q9HAB3 445 aa21.15■□□□□ 0.98
LDLR-206ENST00000557958 THRAP3Q9Y2W1 955 aaKnown RBP21.15■□□□□ 0.98
LDLR-206ENST00000557958 BCL9LQ86UU0 1499 aa21.15■□□□□ 0.98
LDLR-206ENST00000557958 KDM6AO15550 1401 aaPredicted RBP21.15■□□□□ 0.98
LDLR-206ENST00000557958 AFF2P51816 1311 aa21.15■□□□□ 0.98
LDLR-206ENST00000557958 FAM98CQ17RN3 349 aaKnown RBP21.15■□□□□ 0.98
LDLR-206ENST00000557958 CACNA1FO60840 1977 aa21.14■□□□□ 0.97
LDLR-206ENST00000557958 VPS72Q15906 364 aa21.14■□□□□ 0.97
LDLR-206ENST00000557958 NRAPQ86VF7 1730 aa21.14■□□□□ 0.97
LDLR-206ENST00000557958 FLIIQ13045 1269 aa21.13■□□□□ 0.97
LDLR-206ENST00000557958 SLC39A6Q13433 755 aa21.13■□□□□ 0.97
LDLR-206ENST00000557958 DDB1Q16531 1140 aa21.13■□□□□ 0.97
LDLR-206ENST00000557958 NECTIN2Q92692 538 aa21.13■□□□□ 0.97
LDLR-206ENST00000557958 PKD1L3Q7Z443 1732 aa21.13■□□□□ 0.97
LDLR-206ENST00000557958 ADAMTS7Q9UKP4 1686 aa21.13■□□□□ 0.97
LDLR-206ENST00000557958 FKBP5Q13451 457 aaPredicted RBP21.12■□□□□ 0.97
LDLR-206ENST00000557958 C8orf34Q49A92 452 aa21.12■□□□□ 0.97
LDLR-206ENST00000557958 CDCA7Q9BWT1 371 aaPredicted RBP21.12■□□□□ 0.97
LDLR-206ENST00000557958 NWD2Q9ULI1 1742 aa21.12■□□□□ 0.97
LDLR-206ENST00000557958 DISP2A7MBM2 1401 aa21.11■□□□□ 0.97
LDLR-206ENST00000557958 PXDNLA1KZ92 1463 aa21.1■□□□□ 0.97
LDLR-206ENST00000557958 G2E3Q7L622 706 aa21.1■□□□□ 0.97
LDLR-206ENST00000557958 NUCB1Q02818 461 aa21.09■□□□□ 0.97
LDLR-206ENST00000557958 SLC4A10Q6U841 1118 aa21.09■□□□□ 0.97
LDLR-206ENST00000557958 BARGINQ6ZT62 677 aa21.09■□□□□ 0.97
LDLR-206ENST00000557958 RPAP2Q8IXW5 612 aaPredicted RBP21.09■□□□□ 0.97
LDLR-206ENST00000557958 C1orf115Q9H7X2 142 aa21.09■□□□□ 0.97
LDLR-206ENST00000557958 NKX1-1Q15270 411 aaPredicted RBP21.09■□□□□ 0.97
LDLR-206ENST00000557958 EIF2S2P20042 333 aaKnown RBP21.08■□□□□ 0.97
LDLR-206ENST00000557958 SYTL4Q96C24 671 aaPredicted RBP21.08■□□□□ 0.97
LDLR-206ENST00000557958 VIRMAQ69YN4 1812 aaKnown RBP21.08■□□□□ 0.96
LDLR-206ENST00000557958 ZNF790Q6PG37 636 aa21.07■□□□□ 0.96
LDLR-206ENST00000557958 TTC5Q8N0Z6 440 aa21.07■□□□□ 0.96
LDLR-206ENST00000557958 SIPA1L3O60292 1781 aaPredicted RBP21.07■□□□□ 0.96
LDLR-206ENST00000557958 ERVV-2B6SEH9 535 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms