RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 SSH2Q76I76 1423 aa19.89■□□□□ 0.78
SHMT2-232ENST00000557487 TTC21BQ7Z4L5 1316 aa19.89■□□□□ 0.77
SHMT2-232ENST00000557487 ZNF500O60304 480 aaPredicted RBP19.89■□□□□ 0.77
SHMT2-232ENST00000557487 NCLP19338 710 aaKnown RBP19.89■□□□□ 0.77
SHMT2-232ENST00000557487 DCTN1Q14203 1278 aa19.89■□□□□ 0.77
SHMT2-232ENST00000557487 EIF4A2Q14240 407 aaKnown RBP19.89■□□□□ 0.77
SHMT2-232ENST00000557487 IL17RAQ96F46 866 aa19.89■□□□□ 0.77
SHMT2-232ENST00000557487 TMEM94Q12767 1356 aa19.89■□□□□ 0.77
SHMT2-232ENST00000557487 LRSAM1Q6UWE0 723 aa19.88■□□□□ 0.77
SHMT2-232ENST00000557487 OTUD7AQ8TE49 926 aaPredicted RBP19.88■□□□□ 0.77
SHMT2-232ENST00000557487 INTS4Q96HW7 963 aaKnown RBP19.88■□□□□ 0.77
SHMT2-232ENST00000557487 ZRANB1Q9UGI0 708 aa19.88■□□□□ 0.77
SHMT2-232ENST00000557487 PDE1AP54750 535 aa19.88■□□□□ 0.77
SHMT2-232ENST00000557487 SULT6B1Q6IMI4 303 aa19.88■□□□□ 0.77
SHMT2-232ENST00000557487 MEIS3Q99687 375 aa19.88■□□□□ 0.77
SHMT2-232ENST00000557487 CRB1P82279 1406 aa19.88■□□□□ 0.77
SHMT2-232ENST00000557487 XRN1Q8IZH2 1706 aaKnown RBP19.88■□□□□ 0.77
SHMT2-232ENST00000557487 RGPD1P0DJD0 1748 aa19.87■□□□□ 0.77
SHMT2-232ENST00000557487 PRPF40AO75400 957 aaKnown RBP19.87■□□□□ 0.77
SHMT2-232ENST00000557487 KIAA1211Q6ZU35 1233 aa19.87■□□□□ 0.77
SHMT2-232ENST00000557487 ILDR1Q86SU0 546 aaPredicted RBP19.87■□□□□ 0.77
SHMT2-232ENST00000557487 RBSNQ9H1K0 784 aa19.86■□□□□ 0.77
SHMT2-232ENST00000557487 ZDHHC9Q9Y397 364 aa19.86■□□□□ 0.77
SHMT2-232ENST00000557487 OVOS2A0A0J9YW53 1432 aa19.86■□□□□ 0.77
SHMT2-232ENST00000557487 OVOS2Q6IE36 1432 aa19.86■□□□□ 0.77
SHMT2-232ENST00000557487 CUL4AQ13619 759 aa19.86■□□□□ 0.77
SHMT2-232ENST00000557487 CSPP1Q1MSJ5 1256 aa19.86■□□□□ 0.77
SHMT2-232ENST00000557487 ZGPATQ8N5A5 531 aaKnown RBP19.86■□□□□ 0.77
SHMT2-232ENST00000557487 PDCL3Q9H2J4 239 aa19.86■□□□□ 0.77
SHMT2-232ENST00000557487 GPT2Q8TD30 523 aa19.85■□□□□ 0.77
SHMT2-232ENST00000557487 SYAP1Q96A49 352 aaPredicted RBP19.85■□□□□ 0.77
SHMT2-232ENST00000557487 SOS1Q07889 1333 aaPredicted RBP19.85■□□□□ 0.77
SHMT2-232ENST00000557487 XIRP1Q702N8 1843 aaKnown RBP19.85■□□□□ 0.77
SHMT2-232ENST00000557487 SMARCA5O60264 1052 aaPredicted RBP19.84■□□□□ 0.77
SHMT2-232ENST00000557487 GNAI2P04899 355 aa19.84■□□□□ 0.77
SHMT2-232ENST00000557487 SLC4A2P04920 1241 aa19.84■□□□□ 0.77
SHMT2-232ENST00000557487 PRIM1P49642 420 aaKnown RBP19.84■□□□□ 0.77
SHMT2-232ENST00000557487 PKP1Q13835 747 aa19.84■□□□□ 0.77
SHMT2-232ENST00000557487 SRCIN1Q9C0H9 1055 aa19.84■□□□□ 0.77
SHMT2-232ENST00000557487 AK9Q5TCS8 1911 aa19.84■□□□□ 0.77
SHMT2-232ENST00000557487 USP31Q70CQ4 1352 aa19.84■□□□□ 0.77
SHMT2-232ENST00000557487 TOM1O60784 492 aa19.84■□□□□ 0.77
SHMT2-232ENST00000557487 NALCNQ8IZF0 1738 aa19.84■□□□□ 0.77
SHMT2-232ENST00000557487 AOX1Q06278 1338 aa19.83■□□□□ 0.77
SHMT2-232ENST00000557487 UBAP1LF5GYI3 381 aa19.83■□□□□ 0.77
SHMT2-232ENST00000557487 BRD1O95696 1058 aa19.83■□□□□ 0.77
SHMT2-232ENST00000557487 KLHL34Q8N239 644 aa19.83■□□□□ 0.77
SHMT2-232ENST00000557487 TMX3Q96JJ7 454 aa19.83■□□□□ 0.77
SHMT2-232ENST00000557487 MAP7D2Q96T17 732 aa19.83■□□□□ 0.77
SHMT2-232ENST00000557487 CCDC39Q9UFE4 941 aa19.83■□□□□ 0.77
SHMT2-232ENST00000557487 SALL3Q9BXA9 1300 aa19.83■□□□□ 0.76
SHMT2-232ENST00000557487 GNAI3P08754 354 aa19.82■□□□□ 0.76
SHMT2-232ENST00000557487 AEBP1Q8IUX7 1158 aa19.82■□□□□ 0.76
SHMT2-232ENST00000557487 ESYT1Q9BSJ8 1104 aa19.82■□□□□ 0.76
SHMT2-232ENST00000557487 ZKSCAN5Q9Y2L8 839 aa19.82■□□□□ 0.76
SHMT2-232ENST00000557487 NEK4P51957 841 aa19.81■□□□□ 0.76
SHMT2-232ENST00000557487 MCM10Q7L590 875 aa19.81■□□□□ 0.76
SHMT2-232ENST00000557487 PLEKHG3A1L390 1219 aa19.8■□□□□ 0.76
SHMT2-232ENST00000557487 HTATSF1O43719 755 aaKnown RBP19.8■□□□□ 0.76
SHMT2-232ENST00000557487 PHF14O94880 888 aa19.8■□□□□ 0.76
SHMT2-232ENST00000557487 KRT24Q2M2I5 525 aa19.8■□□□□ 0.76
SHMT2-232ENST00000557487 LRRCC1Q9C099 1032 aa19.8■□□□□ 0.76
SHMT2-232ENST00000557487 STAP2Q9UGK3 403 aa19.8■□□□□ 0.76
SHMT2-232ENST00000557487 TOPAZ1Q8N9V7 1692 aa19.8■□□□□ 0.76
SHMT2-232ENST00000557487 RTF1Q92541 710 aaKnown RBP19.8■□□□□ 0.76
SHMT2-232ENST00000557487 RBM33Q96EV2 1170 aaKnown RBP19.8■□□□□ 0.76
SHMT2-232ENST00000557487 TUBGCP6Q96RT7 1819 aa19.8■□□□□ 0.76
SHMT2-232ENST00000557487 TMEM63CQ9P1W3 806 aa19.79■□□□□ 0.76
SHMT2-232ENST00000557487 APBB1O00213 710 aa19.78■□□□□ 0.76
SHMT2-232ENST00000557487 MX1P20591 662 aa19.78■□□□□ 0.76
SHMT2-232ENST00000557487 STK31Q9BXU1 1019 aa19.78■□□□□ 0.76
SHMT2-232ENST00000557487 PRR36Q9H6K5 1346 aa19.78■□□□□ 0.76
SHMT2-232ENST00000557487 C19orf44Q9H6X5 657 aa19.78■□□□□ 0.76
SHMT2-232ENST00000557487 ATP8B2P98198 1209 aa19.77■□□□□ 0.76
SHMT2-232ENST00000557487 TSPYL4Q9UJ04 414 aa19.77■□□□□ 0.76
SHMT2-232ENST00000557487 KDRP35968 1356 aa19.77■□□□□ 0.76
SHMT2-232ENST00000557487 ROBO2Q9HCK4 1378 aa19.77■□□□□ 0.76
SHMT2-232ENST00000557487 USP6P35125 1406 aa19.77■□□□□ 0.76
SHMT2-232ENST00000557487 PXDNLA1KZ92 1463 aa19.77■□□□□ 0.76
SHMT2-232ENST00000557487 FAM184AQ8NB25 1140 aa19.76■□□□□ 0.75
SHMT2-232ENST00000557487 RBM27Q9P2N5 1060 aaKnown RBP19.76■□□□□ 0.75
SHMT2-232ENST00000557487 PEAK1Q9H792 1746 aa19.76■□□□□ 0.75
SHMT2-232ENST00000557487 TTC21AQ8NDW8 1320 aa19.76■□□□□ 0.75
SHMT2-232ENST00000557487 SYCE3A1L190 88 aa19.76■□□□□ 0.75
SHMT2-232ENST00000557487 CHMLP26374 656 aa19.76■□□□□ 0.75
SHMT2-232ENST00000557487 MTERF4Q7Z6M4 381 aaKnown RBP19.76■□□□□ 0.75
SHMT2-232ENST00000557487 TSPY26PQ9H489 355 aa19.76■□□□□ 0.75
SHMT2-232ENST00000557487 N4BP2Q86UW6 1770 aaPredicted RBP19.75■□□□□ 0.75
SHMT2-232ENST00000557487 BABAM1Q9NWV8 329 aa19.75■□□□□ 0.75
SHMT2-232ENST00000557487 EIF2AK3Q9NZJ5 1116 aaKnown RBP19.75■□□□□ 0.75
SHMT2-232ENST00000557487 WDR33Q9C0J8 1336 aaKnown RBP19.74■□□□□ 0.75
SHMT2-232ENST00000557487 UVSSAQ2YD98 709 aa19.74■□□□□ 0.75
SHMT2-232ENST00000557487 CCDC30Q5VVM6 783 aa19.74■□□□□ 0.75
SHMT2-232ENST00000557487 SLC4A10Q6U841 1118 aa19.74■□□□□ 0.75
SHMT2-232ENST00000557487 DCCP43146 1447 aa19.73■□□□□ 0.75
SHMT2-232ENST00000557487 SBNO1A3KN83 1393 aa19.73■□□□□ 0.75
SHMT2-232ENST00000557487 ACEP12821 1306 aa19.73■□□□□ 0.75
SHMT2-232ENST00000557487 CACNA1FO60840 1977 aa19.73■□□□□ 0.75
SHMT2-232ENST00000557487 LRRC37A3O60309 1634 aa19.73■□□□□ 0.75
SHMT2-232ENST00000557487 FLT4P35916 1363 aa19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms