RNA–Protein interactions for RNA: ENST00000557275.5

SYNE3-205, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SYNE3, Length 13,488 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-205ENST00000557275 TDO2P48775 406 aa10.23□□□□□ -0.77
SYNE3-205ENST00000557275 SUDS3Q9H7L9 328 aaPredicted RBP10.23□□□□□ -0.77
SYNE3-205ENST00000557275 GOPCQ9HD26 462 aa10.23□□□□□ -0.77
SYNE3-205ENST00000557275 YEATS4O95619 227 aa10.22□□□□□ -0.77
SYNE3-205ENST00000557275 STXBP4Q6ZWJ1 553 aa10.22□□□□□ -0.77
SYNE3-205ENST00000557275 IFT74Q96LB3 600 aa10.22□□□□□ -0.77
SYNE3-205ENST00000557275 CCDC77Q9BR77 488 aa10.22□□□□□ -0.77
SYNE3-205ENST00000557275 RUNDC1Q96C34 613 aa10.22□□□□□ -0.77
SYNE3-205ENST00000557275 NEK4P51957 841 aa10.22□□□□□ -0.77
SYNE3-205ENST00000557275 KRT222Q8N1A0 295 aa10.22□□□□□ -0.77
SYNE3-205ENST00000557275 WASHC2CQ9Y4E1 1318 aa10.22□□□□□ -0.77
SYNE3-205ENST00000557275 ERCC6LQ2NKX8 1250 aa10.22□□□□□ -0.77
SYNE3-205ENST00000557275 CACNA2D4Q7Z3S7 1137 aa10.22□□□□□ -0.77
SYNE3-205ENST00000557275 RAB3IPQ96QF0 476 aaPredicted RBP10.22□□□□□ -0.77
SYNE3-205ENST00000557275 RAB3GAP2Q9H2M9 1393 aa10.22□□□□□ -0.77
SYNE3-205ENST00000557275 RPUSD2Q8IZ73 545 aaKnown RBP10.22□□□□□ -0.77
SYNE3-205ENST00000557275 CCDC27Q2M243 656 aa10.21□□□□□ -0.77
SYNE3-205ENST00000557275 RBM10P98175 930 aaKnown RBP10.21□□□□□ -0.77
SYNE3-205ENST00000557275 POLA1P09884 1462 aaPredicted RBP10.21□□□□□ -0.77
SYNE3-205ENST00000557275 MVPQ14764 893 aaKnown RBP10.21□□□□□ -0.77
SYNE3-205ENST00000557275 CUX1P39880 1505 aa10.21□□□□□ -0.77
SYNE3-205ENST00000557275 A0A1W2PRG0 241 aa10.21□□□□□ -0.77
SYNE3-205ENST00000557275 WDR63Q8IWG1 891 aa10.21□□□□□ -0.77
SYNE3-205ENST00000557275 ARFGAP3Q9NP61 516 aa10.21□□□□□ -0.77
SYNE3-205ENST00000557275 CEP120Q8N960 986 aa10.21□□□□□ -0.78
SYNE3-205ENST00000557275 SARNPP82979 210 aaKnown RBP10.21□□□□□ -0.78
SYNE3-205ENST00000557275 ODF2LQ9ULJ1 636 aa10.21□□□□□ -0.78
SYNE3-205ENST00000557275 MATR3P43243 847 aaKnown RBP eCLIP10.2□□□□□ -0.78
SYNE3-205ENST00000557275 MAP7Q14244 749 aa10.2□□□□□ -0.78
SYNE3-205ENST00000557275 ABCC8Q09428 1581 aa10.2□□□□□ -0.78
SYNE3-205ENST00000557275 FAM177A1Q8N128 213 aaPredicted RBP10.2□□□□□ -0.78
SYNE3-205ENST00000557275 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.2□□□□□ -0.78
SYNE3-205ENST00000557275 CASQ2O14958 399 aaPredicted RBP10.2□□□□□ -0.78
SYNE3-205ENST00000557275 RABGAP1Q9Y3P9 1069 aa10.2□□□□□ -0.78
SYNE3-205ENST00000557275 CACNA2D3Q8IZS8 1091 aa10.2□□□□□ -0.78
SYNE3-205ENST00000557275 K7ELQ4 463 aaPredicted RBP10.2□□□□□ -0.78
SYNE3-205ENST00000557275 HLTFQ14527 1009 aaKnown RBP eCLIP10.2□□□□□ -0.78
SYNE3-205ENST00000557275 COG6Q9Y2V7 657 aa10.2□□□□□ -0.78
SYNE3-205ENST00000557275 CCDC178Q5BJE1 867 aa10.2□□□□□ -0.78
SYNE3-205ENST00000557275 EFCAB2Q5VUJ9 269 aa10.2□□□□□ -0.78
SYNE3-205ENST00000557275 CRBNQ96SW2 442 aa10.2□□□□□ -0.78
SYNE3-205ENST00000557275 MPHOSPH9Q99550 1183 aa10.2□□□□□ -0.78
SYNE3-205ENST00000557275 ATP2A2P16615 1042 aaKnown RBP10.2□□□□□ -0.78
SYNE3-205ENST00000557275 KIF4BQ2VIQ3 1234 aa10.2□□□□□ -0.78
SYNE3-205ENST00000557275 USP25Q9UHP3 1055 aa10.2□□□□□ -0.78
SYNE3-205ENST00000557275 WDHD1O75717 1129 aaPredicted RBP10.2□□□□□ -0.78
SYNE3-205ENST00000557275 CFAP58Q5T655 872 aa10.2□□□□□ -0.78
SYNE3-205ENST00000557275 LARP1BQ659C4 914 aaKnown RBP10.2□□□□□ -0.78
SYNE3-205ENST00000557275 ATP5DP30049 168 aa10.2□□□□□ -0.78
SYNE3-205ENST00000557275 USP47Q96K76 1375 aa10.2□□□□□ -0.78
SYNE3-205ENST00000557275 TOP1P11387 765 aaKnown RBP10.19□□□□□ -0.78
SYNE3-205ENST00000557275 SMC1BQ8NDV3 1235 aa10.19□□□□□ -0.78
SYNE3-205ENST00000557275 EHMT1Q9H9B1 1298 aa10.19□□□□□ -0.78
SYNE3-205ENST00000557275 SEC63Q9UGP8 760 aaKnown RBP10.19□□□□□ -0.78
SYNE3-205ENST00000557275 DIAPH1O60610 1272 aaKnown RBP10.19□□□□□ -0.78
SYNE3-205ENST00000557275 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.19□□□□□ -0.78
SYNE3-205ENST00000557275 CCDC30Q5VVM6 783 aa10.19□□□□□ -0.78
SYNE3-205ENST00000557275 KANK3Q6NY19 840 aa10.19□□□□□ -0.78
SYNE3-205ENST00000557275 KIAA0753Q2KHM9 967 aa10.19□□□□□ -0.78
SYNE3-205ENST00000557275 GABPB2Q8TAK5 448 aaPredicted RBP10.19□□□□□ -0.78
SYNE3-205ENST00000557275 ZNF428Q96B54 188 aa10.19□□□□□ -0.78
SYNE3-205ENST00000557275 NEUROD6Q96NK8 337 aa10.19□□□□□ -0.78
SYNE3-205ENST00000557275 CCDC183Q5T5S1 534 aa10.19□□□□□ -0.78
SYNE3-205ENST00000557275 KIF6Q6ZMV9 814 aa10.19□□□□□ -0.78
SYNE3-205ENST00000557275 GBP7Q8N8V2 638 aaPredicted RBP10.19□□□□□ -0.78
SYNE3-205ENST00000557275 PRPF31Q8WWY3 499 aaKnown RBP10.19□□□□□ -0.78
SYNE3-205ENST00000557275 MGEA5O60502 916 aa10.19□□□□□ -0.78
SYNE3-205ENST00000557275 B4GALNT4Q76KP1 1039 aa10.19□□□□□ -0.78
SYNE3-205ENST00000557275 AMPD3Q01432 767 aa10.18□□□□□ -0.78
SYNE3-205ENST00000557275 GBP6Q6ZN66 633 aa10.18□□□□□ -0.78
SYNE3-205ENST00000557275 CCDC121Q6ZUS5 278 aa10.18□□□□□ -0.78
SYNE3-205ENST00000557275 TPD52P55327 224 aaPredicted RBP10.18□□□□□ -0.78
SYNE3-205ENST00000557275 MXRA7P84157 204 aa10.18□□□□□ -0.78
SYNE3-205ENST00000557275 EBAG9O00559 213 aa10.18□□□□□ -0.78
SYNE3-205ENST00000557275 DRC1Q96MC2 740 aa10.18□□□□□ -0.78
SYNE3-205ENST00000557275 SETDB1Q15047 1291 aa10.18□□□□□ -0.78
SYNE3-205ENST00000557275 CTNNBL1Q8WYA6 563 aaPredicted RBP10.18□□□□□ -0.78
SYNE3-205ENST00000557275 LRRC27Q9C0I9 530 aa10.18□□□□□ -0.78
SYNE3-205ENST00000557275 SELENOOQ9BVL4 669 aa10.18□□□□□ -0.78
SYNE3-205ENST00000557275 ARFGAP2Q8N6H7 521 aa10.18□□□□□ -0.78
SYNE3-205ENST00000557275 VCX3AQ9NNX9 186 aa10.18□□□□□ -0.78
SYNE3-205ENST00000557275 ATP11AP98196 1134 aa10.18□□□□□ -0.78
SYNE3-205ENST00000557275 PLEKHH2Q8IVE3 1493 aa10.18□□□□□ -0.78
SYNE3-205ENST00000557275 IRX4P78413 519 aa10.18□□□□□ -0.78
SYNE3-205ENST00000557275 TSNAXIP1Q2TAA8 658 aa10.18□□□□□ -0.78
SYNE3-205ENST00000557275 STMN2Q93045 179 aa10.18□□□□□ -0.78
SYNE3-205ENST00000557275 ZNF853P0CG23 659 aa10.18□□□□□ -0.78
SYNE3-205ENST00000557275 PIP4K2BP78356 416 aa10.18□□□□□ -0.78
SYNE3-205ENST00000557275 LACTBP83111 547 aaPredicted RBP10.18□□□□□ -0.78
SYNE3-205ENST00000557275 BRD4O60885 1362 aaPredicted RBP10.18□□□□□ -0.78
SYNE3-205ENST00000557275 MPHOSPH10O00566 681 aaKnown RBP10.17□□□□□ -0.78
SYNE3-205ENST00000557275 TMEM266Q2M3C6 531 aa10.17□□□□□ -0.78
SYNE3-205ENST00000557275 LMNTD2Q8IXW0 634 aa10.17□□□□□ -0.78
SYNE3-205ENST00000557275 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.17□□□□□ -0.78
SYNE3-205ENST00000557275 MSH5O43196 834 aa10.17□□□□□ -0.78
SYNE3-205ENST00000557275 RBM25P49756 843 aaKnown RBP10.17□□□□□ -0.78
SYNE3-205ENST00000557275 SNX16P57768 344 aa10.17□□□□□ -0.78
SYNE3-205ENST00000557275 SF3B2Q13435 895 aaKnown RBP10.17□□□□□ -0.78
SYNE3-205ENST00000557275 PHLDB2Q86SQ0 1253 aa10.17□□□□□ -0.78
SYNE3-205ENST00000557275 UBAC1Q9BSL1 405 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms