RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 UBR3Q6ZT12 1888 aa15.97■□□□□ 0.15
VRK1-204ENST00000555351 CABP4P57796 275 aa15.97■□□□□ 0.15
VRK1-204ENST00000555351 AK7Q96M32 723 aa15.97■□□□□ 0.15
VRK1-204ENST00000555351 FHDC1Q9C0D6 1143 aaPredicted RBP15.97■□□□□ 0.15
VRK1-204ENST00000555351 ADAMTS7Q9UKP4 1686 aa15.96■□□□□ 0.15
VRK1-204ENST00000555351 SSFA2P28290 1259 aa15.96■□□□□ 0.15
VRK1-204ENST00000555351 CICQ96RK0 1608 aaPredicted RBP15.96■□□□□ 0.15
VRK1-204ENST00000555351 ATP6V1AP38606 617 aa15.95■□□□□ 0.14
VRK1-204ENST00000555351 CFAP53Q96M91 514 aa15.95■□□□□ 0.14
VRK1-204ENST00000555351 MRC1P22897 1456 aa15.95■□□□□ 0.14
VRK1-204ENST00000555351 RC3H1Q5TC82 1133 aaKnown RBP15.94■□□□□ 0.14
VRK1-204ENST00000555351 COL5A3P25940 1745 aaPredicted RBP15.94■□□□□ 0.14
VRK1-204ENST00000555351 MSH5O43196 834 aa15.93■□□□□ 0.14
VRK1-204ENST00000555351 HMOX1P09601 288 aa15.93■□□□□ 0.14
VRK1-204ENST00000555351 ITPK1Q13572 414 aa15.93■□□□□ 0.14
VRK1-204ENST00000555351 LINC00116Q8NCU8 138 aa15.93■□□□□ 0.14
VRK1-204ENST00000555351 NFATC2IPQ8NCF5 419 aa15.92■□□□□ 0.14
VRK1-204ENST00000555351 CNTNAP4Q9C0A0 1308 aa15.92■□□□□ 0.14
VRK1-204ENST00000555351 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.91■□□□□ 0.14
VRK1-204ENST00000555351 ADRA2BP18089 450 aa15.91■□□□□ 0.14
VRK1-204ENST00000555351 SLC52A2Q9HAB3 445 aa15.91■□□□□ 0.14
VRK1-204ENST00000555351 NUDCQ9Y266 331 aa15.91■□□□□ 0.14
VRK1-204ENST00000555351 RNMTO43148 476 aaKnown RBP15.9■□□□□ 0.14
VRK1-204ENST00000555351 PPP2R1AP30153 589 aa15.9■□□□□ 0.14
VRK1-204ENST00000555351 MTHFSDQ2M296 383 aaKnown RBP15.9■□□□□ 0.14
VRK1-204ENST00000555351 SLC4A9Q96Q91 983 aa15.9■□□□□ 0.14
VRK1-204ENST00000555351 RBM42Q9BTD8 480 aaKnown RBP15.9■□□□□ 0.14
VRK1-204ENST00000555351 VIRMAQ69YN4 1812 aaKnown RBP15.89■□□□□ 0.13
VRK1-204ENST00000555351 U2SURPO15042 1029 aaKnown RBP15.89■□□□□ 0.13
VRK1-204ENST00000555351 GNPATO15228 680 aa15.89■□□□□ 0.13
VRK1-204ENST00000555351 GAS2L2Q8NHY3 880 aa15.89■□□□□ 0.13
VRK1-204ENST00000555351 RTCBQ9Y3I0 505 aaKnown RBP15.88■□□□□ 0.13
VRK1-204ENST00000555351 CD2APQ9Y5K6 639 aa15.88■□□□□ 0.13
VRK1-204ENST00000555351 RPS6KA4O75676 772 aa15.87■□□□□ 0.13
VRK1-204ENST00000555351 AMIGO3Q86WK7 504 aa15.87■□□□□ 0.13
VRK1-204ENST00000555351 LGR6Q9HBX8 967 aa15.87■□□□□ 0.13
VRK1-204ENST00000555351 TJP1Q07157 1748 aa15.87■□□□□ 0.13
VRK1-204ENST00000555351 FCHSD2O94868 740 aa15.86■□□□□ 0.13
VRK1-204ENST00000555351 PHF14O94880 888 aa15.86■□□□□ 0.13
VRK1-204ENST00000555351 CNGB1Q14028 1251 aaPredicted RBP15.86■□□□□ 0.13
VRK1-204ENST00000555351 TRAPPC3LQ5T215 181 aa15.86■□□□□ 0.13
VRK1-204ENST00000555351 GNAT3A8MTJ3 354 aa15.85■□□□□ 0.13
VRK1-204ENST00000555351 PTCD1O75127 700 aaKnown RBP15.85■□□□□ 0.13
VRK1-204ENST00000555351 MSL1Q68DK7 614 aa15.85■□□□□ 0.13
VRK1-204ENST00000555351 VSIG10Q8N0Z9 540 aa15.85■□□□□ 0.13
VRK1-204ENST00000555351 RSPH6AQ9H0K4 717 aa15.85■□□□□ 0.13
VRK1-204ENST00000555351 YY1P25490 414 aa15.84■□□□□ 0.13
VRK1-204ENST00000555351 NLGN1Q8N2Q7 840 aa15.84■□□□□ 0.13
VRK1-204ENST00000555351 UBR2Q8IWV8 1755 aa15.84■□□□□ 0.13
VRK1-204ENST00000555351 KCPQ6ZWJ8 1503 aa15.84■□□□□ 0.13
VRK1-204ENST00000555351 SIPA1L3O60292 1781 aaPredicted RBP15.83■□□□□ 0.12
VRK1-204ENST00000555351 MYH14Q7Z406 1995 aaKnown RBP15.83■□□□□ 0.12
VRK1-204ENST00000555351 CEMIPQ8WUJ3 1361 aa15.83■□□□□ 0.12
VRK1-204ENST00000555351 U2AF1L5P0DN76 240 aaPredicted RBP15.82■□□□□ 0.12
VRK1-204ENST00000555351 PRKAR2BP31323 418 aa15.82■□□□□ 0.12
VRK1-204ENST00000555351 CRKLP46109 303 aaKnown RBP15.82■□□□□ 0.12
VRK1-204ENST00000555351 U2AF1Q01081 240 aaKnown RBP eCLIP15.82■□□□□ 0.12
VRK1-204ENST00000555351 TEFQ10587 303 aa15.82■□□□□ 0.12
VRK1-204ENST00000555351 IL17REQ8NFR9 667 aa15.82■□□□□ 0.12
VRK1-204ENST00000555351 ARHGEF1Q92888 912 aaKnown RBP15.82■□□□□ 0.12
VRK1-204ENST00000555351 C4AP0C0L4 1744 aa15.81■□□□□ 0.12
VRK1-204ENST00000555351 RFC4P35249 363 aa15.81■□□□□ 0.12
VRK1-204ENST00000555351 KLHL34Q8N239 644 aa15.81■□□□□ 0.12
VRK1-204ENST00000555351 CHD4Q14839 1912 aa15.8■□□□□ 0.12
VRK1-204ENST00000555351 HTATSF1O43719 755 aaKnown RBP15.8■□□□□ 0.12
VRK1-204ENST00000555351 RALBP1Q15311 655 aa15.8■□□□□ 0.12
VRK1-204ENST00000555351 GPR162Q16538 588 aa15.8■□□□□ 0.12
VRK1-204ENST00000555351 SMIM5Q71RC9 77 aa15.8■□□□□ 0.12
VRK1-204ENST00000555351 NLGN2Q8NFZ4 835 aa15.8■□□□□ 0.12
VRK1-204ENST00000555351 PHACTR3Q96KR7 559 aa15.8■□□□□ 0.12
VRK1-204ENST00000555351 CCDC87Q9NVE4 849 aa15.8■□□□□ 0.12
VRK1-204ENST00000555351 GRIN3BO60391 1043 aa15.79■□□□□ 0.12
VRK1-204ENST00000555351 CYP19A1P11511 503 aaPredicted RBP15.79■□□□□ 0.12
VRK1-204ENST00000555351 GYS1P13807 737 aa15.79■□□□□ 0.12
VRK1-204ENST00000555351 INTS5Q6P9B9 1019 aaKnown RBP15.79■□□□□ 0.12
VRK1-204ENST00000555351 TTC5Q8N0Z6 440 aa15.79■□□□□ 0.12
VRK1-204ENST00000555351 TEX13AQ9BXU3 409 aaPredicted RBP15.79■□□□□ 0.12
VRK1-204ENST00000555351 KIF13BQ9NQT8 1826 aa15.79■□□□□ 0.12
VRK1-204ENST00000555351 SLC39A6Q13433 755 aa15.78■□□□□ 0.12
VRK1-204ENST00000555351 ZNF790Q6PG37 636 aa15.78■□□□□ 0.12
VRK1-204ENST00000555351 DNAJC10Q8IXB1 793 aa15.78■□□□□ 0.12
VRK1-204ENST00000555351 USP42Q9H9J4 1324 aaKnown RBP15.77■□□□□ 0.12
VRK1-204ENST00000555351 STARD3NLO95772 234 aa15.77■□□□□ 0.12
VRK1-204ENST00000555351 MMP10P09238 476 aa15.77■□□□□ 0.12
VRK1-204ENST00000555351 PNNQ9H307 717 aaKnown RBP15.77■□□□□ 0.12
VRK1-204ENST00000555351 SOS1Q07889 1333 aaPredicted RBP15.76■□□□□ 0.11
VRK1-204ENST00000555351 NEFMP07197 916 aa15.76■□□□□ 0.11
VRK1-204ENST00000555351 RTF1Q92541 710 aaKnown RBP15.76■□□□□ 0.11
VRK1-204ENST00000555351 HEG1Q9ULI3 1381 aa15.75■□□□□ 0.11
VRK1-204ENST00000555351 TGFB2P61812 414 aa15.75■□□□□ 0.11
VRK1-204ENST00000555351 C10orf71Q711Q0 1435 aa15.75■□□□□ 0.11
VRK1-204ENST00000555351 ZNF496Q96IT1 587 aaPredicted RBP15.74■□□□□ 0.11
VRK1-204ENST00000555351 FMNL2Q96PY5 1086 aa15.74■□□□□ 0.11
VRK1-204ENST00000555351 PARP3Q9Y6F1 533 aa15.74■□□□□ 0.11
VRK1-204ENST00000555351 YBX3P16989 372 aaKnown RBP eCLIP15.73■□□□□ 0.11
VRK1-204ENST00000555351 COL15A1P39059 1388 aa15.73■□□□□ 0.11
VRK1-204ENST00000555351 BTBD11A6QL63 1104 aa15.72■□□□□ 0.11
VRK1-204ENST00000555351 ZPR1O75312 459 aa15.72■□□□□ 0.11
VRK1-204ENST00000555351 DDX10Q13206 875 aaKnown RBP15.72■□□□□ 0.11
VRK1-204ENST00000555351 PLEKHF1Q96S99 279 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms