RNA–Protein interactions for RNA: ENST00000555221.3

CKS1BP1-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 1, humanhuman

BASIC

Gene CKS1BP1, Length 240 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP1-201ENST00000555221 SERTAD1Q9UHV2 236 aa9.53□□□□□ -0.88
CKS1BP1-201ENST00000555221 Q6ZVU0 165 aa9.52□□□□□ -0.89
CKS1BP1-201ENST00000555221 SND1Q7KZF4 910 aaKnown RBP eCLIP9.52□□□□□ -0.89
CKS1BP1-201ENST00000555221 GAS2L2Q8NHY3 880 aa9.52□□□□□ -0.89
CKS1BP1-201ENST00000555221 KLF16Q9BXK1 252 aaPredicted RBP9.52□□□□□ -0.89
CKS1BP1-201ENST00000555221 ARHGEF10LQ9HCE6 1279 aa9.52□□□□□ -0.89
CKS1BP1-201ENST00000555221 STAU1O95793 577 aaKnown RBP9.51□□□□□ -0.89
CKS1BP1-201ENST00000555221 TNS4Q8IZW8 715 aa9.51□□□□□ -0.89
CKS1BP1-201ENST00000555221 XAGE2Q96GT9 111 aa9.51□□□□□ -0.89
CKS1BP1-201ENST00000555221 FOXO3O43524 673 aa9.5□□□□□ -0.89
CKS1BP1-201ENST00000555221 PTCD1O75127 700 aaKnown RBP9.5□□□□□ -0.89
CKS1BP1-201ENST00000555221 LGR5O75473 907 aa9.5□□□□□ -0.89
CKS1BP1-201ENST00000555221 SMPD1P17405 629 aa9.5□□□□□ -0.89
CKS1BP1-201ENST00000555221 SMTNP53814 917 aa9.5□□□□□ -0.89
CKS1BP1-201ENST00000555221 EPHA4P54764 986 aa9.5□□□□□ -0.89
CKS1BP1-201ENST00000555221 CBLBQ13191 982 aa9.5□□□□□ -0.89
CKS1BP1-201ENST00000555221 ESYT1Q9BSJ8 1104 aa9.5□□□□□ -0.89
CKS1BP1-201ENST00000555221 RAB6BQ9NRW1 208 aa9.5□□□□□ -0.89
CKS1BP1-201ENST00000555221 A6NJY4 79 aa9.49□□□□□ -0.89
CKS1BP1-201ENST00000555221 RGS20O76081 388 aa9.49□□□□□ -0.89
CKS1BP1-201ENST00000555221 IL2RAP01589 272 aa9.49□□□□□ -0.89
CKS1BP1-201ENST00000555221 TIMP2P16035 220 aa9.49□□□□□ -0.89
CKS1BP1-201ENST00000555221 PTGIRP43119 386 aa9.49□□□□□ -0.89
CKS1BP1-201ENST00000555221 CLN3Q13286 438 aa9.49□□□□□ -0.89
CKS1BP1-201ENST00000555221 SCG3Q8WXD2 468 aaKnown RBP9.49□□□□□ -0.89
CKS1BP1-201ENST00000555221 CNKSR1Q969H4 720 aa9.49□□□□□ -0.89
CKS1BP1-201ENST00000555221 COL26A1Q96A83 441 aa9.49□□□□□ -0.89
CKS1BP1-201ENST00000555221 ZFAND3Q9H8U3 227 aa9.49□□□□□ -0.89
CKS1BP1-201ENST00000555221 SCHIP1Q9P0W5 487 aaPredicted RBP9.49□□□□□ -0.89
CKS1BP1-201ENST00000555221 A0A1W2PRU2 124 aa9.48□□□□□ -0.89
CKS1BP1-201ENST00000555221 MFAP1P55081 439 aaKnown RBP9.48□□□□□ -0.89
CKS1BP1-201ENST00000555221 MTFR1Q15390 333 aa9.48□□□□□ -0.89
CKS1BP1-201ENST00000555221 TLR1Q15399 786 aa9.48□□□□□ -0.89
CKS1BP1-201ENST00000555221 TRIM67Q6ZTA4 783 aa9.48□□□□□ -0.89
CKS1BP1-201ENST00000555221 TSPAN10Q9H1Z9 355 aaPredicted RBP9.48□□□□□ -0.89
CKS1BP1-201ENST00000555221 ATAD2Q6PL18 1390 aa9.48□□□□□ -0.89
CKS1BP1-201ENST00000555221 SERPINB4P48594 390 aa9.47□□□□□ -0.89
CKS1BP1-201ENST00000555221 FOXK2Q01167 660 aa9.47□□□□□ -0.89
CKS1BP1-201ENST00000555221 FKBP5Q13451 457 aaPredicted RBP9.47□□□□□ -0.89
CKS1BP1-201ENST00000555221 CCDC27Q2M243 656 aa9.47□□□□□ -0.89
CKS1BP1-201ENST00000555221 NBPF15Q8N660 670 aa9.47□□□□□ -0.89
CKS1BP1-201ENST00000555221 KDF1Q8NAX2 398 aaPredicted RBP9.47□□□□□ -0.89
CKS1BP1-201ENST00000555221 VTI1AQ96AJ9 217 aa9.47□□□□□ -0.89
CKS1BP1-201ENST00000555221 NLRP3Q96P20 1036 aa9.47□□□□□ -0.89
CKS1BP1-201ENST00000555221 EGFL7Q9UHF1 273 aa9.47□□□□□ -0.89
CKS1BP1-201ENST00000555221 CDK2AP1O14519 115 aa9.46□□□□□ -0.9
CKS1BP1-201ENST00000555221 RELBQ01201 579 aa9.46□□□□□ -0.9
CKS1BP1-201ENST00000555221 SLC9A9Q8IVB4 645 aa9.46□□□□□ -0.9
CKS1BP1-201ENST00000555221 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.46□□□□□ -0.9
CKS1BP1-201ENST00000555221 CHMP3Q9Y3E7 222 aa9.46□□□□□ -0.9
CKS1BP1-201ENST00000555221 HRH3Q9Y5N1 445 aa9.46□□□□□ -0.9
CKS1BP1-201ENST00000555221 SOWAHDA6NJG2 315 aa9.45□□□□□ -0.9
CKS1BP1-201ENST00000555221 MEN1O00255 615 aa9.45□□□□□ -0.9
CKS1BP1-201ENST00000555221 C21orf2O43822 256 aa9.45□□□□□ -0.9
CKS1BP1-201ENST00000555221 PPP1R12BO60237 982 aaPredicted RBP9.45□□□□□ -0.9
CKS1BP1-201ENST00000555221 SCNN1AP37088 669 aa9.45□□□□□ -0.9
CKS1BP1-201ENST00000555221 PSMA6P60900 246 aaKnown RBP9.45□□□□□ -0.9
CKS1BP1-201ENST00000555221 STAG2Q8N3U4 1231 aa9.45□□□□□ -0.9
CKS1BP1-201ENST00000555221 MEIOBQ8N635 442 aa9.45□□□□□ -0.9
CKS1BP1-201ENST00000555221 AGBL1Q96MI9 1066 aa9.45□□□□□ -0.9
CKS1BP1-201ENST00000555221 MKNK1Q9BUB5 465 aa9.45□□□□□ -0.9
CKS1BP1-201ENST00000555221 CHMP7Q8WUX9 453 aaPredicted RBP9.44□□□□□ -0.9
CKS1BP1-201ENST00000555221 HPS1Q92902 700 aa9.44□□□□□ -0.9
CKS1BP1-201ENST00000555221 TSEN34Q9BSV6 310 aaKnown RBP9.44□□□□□ -0.9
CKS1BP1-201ENST00000555221 UPP2O95045 317 aa9.43□□□□□ -0.9
CKS1BP1-201ENST00000555221 ABL1P00519 1130 aa9.43□□□□□ -0.9
CKS1BP1-201ENST00000555221 GTF2E1P29083 439 aaPredicted RBP9.43□□□□□ -0.9
CKS1BP1-201ENST00000555221 CENPCQ03188 943 aa9.43□□□□□ -0.9
CKS1BP1-201ENST00000555221 PURBQ96QR8 312 aaKnown RBP9.43□□□□□ -0.9
CKS1BP1-201ENST00000555221 SF3B2Q13435 895 aaKnown RBP9.42□□□□□ -0.9
CKS1BP1-201ENST00000555221 GTF3C2Q8WUA4 911 aaPredicted RBP9.42□□□□□ -0.9
CKS1BP1-201ENST00000555221 FHDC1Q9C0D6 1143 aaPredicted RBP9.42□□□□□ -0.9
CKS1BP1-201ENST00000555221 ZNF395Q9H8N7 513 aaPredicted RBP9.42□□□□□ -0.9
CKS1BP1-201ENST00000555221 SEPT3Q9UH03 358 aa9.42□□□□□ -0.9
CKS1BP1-201ENST00000555221 IQSEC3Q9UPP2 1182 aaPredicted RBP9.42□□□□□ -0.9
CKS1BP1-201ENST00000555221 PDZRN3Q9UPQ7 1066 aa9.42□□□□□ -0.9
CKS1BP1-201ENST00000555221 CAPN5O15484 640 aaPredicted RBP9.41□□□□□ -0.9
CKS1BP1-201ENST00000555221 GPC1P35052 558 aa9.41□□□□□ -0.9
CKS1BP1-201ENST00000555221 TBCELQ5QJ74 424 aa9.41□□□□□ -0.9
CKS1BP1-201ENST00000555221 ZSCAN10Q96SZ4 725 aaPredicted RBP9.41□□□□□ -0.9
CKS1BP1-201ENST00000555221 C2orf49Q9BVC5 232 aaPredicted RBP9.41□□□□□ -0.9
CKS1BP1-201ENST00000555221 H3BRB1 525 aa9.4□□□□□ -0.9
CKS1BP1-201ENST00000555221 ICMTO60725 284 aa9.4□□□□□ -0.9
CKS1BP1-201ENST00000555221 PPARGC1BQ86YN6 1023 aaKnown RBP9.4□□□□□ -0.9
CKS1BP1-201ENST00000555221 GLYCTKQ8IVS8 523 aa9.4□□□□□ -0.9
CKS1BP1-201ENST00000555221 TUT1Q9H6E5 874 aaKnown RBP9.4□□□□□ -0.9
CKS1BP1-201ENST00000555221 BIN2Q9UBW5 565 aaPredicted RBP9.4□□□□□ -0.9
CKS1BP1-201ENST00000555221 SERTM1A2A2V5 107 aa9.39□□□□□ -0.91
CKS1BP1-201ENST00000555221 HIRAP54198 1017 aaPredicted RBP9.39□□□□□ -0.91
CKS1BP1-201ENST00000555221 FKBP4Q02790 459 aaKnown RBP eCLIP9.39□□□□□ -0.91
CKS1BP1-201ENST00000555221 ZNF211Q13398 564 aaPredicted RBP9.39□□□□□ -0.91
CKS1BP1-201ENST00000555221 NAA30Q147X3 362 aaPredicted RBP9.39□□□□□ -0.91
CKS1BP1-201ENST00000555221 TEAD4Q15561 434 aa9.39□□□□□ -0.91
CKS1BP1-201ENST00000555221 CAPN12Q6ZSI9 719 aa9.39□□□□□ -0.91
CKS1BP1-201ENST00000555221 HELQQ8TDG4 1101 aa9.39□□□□□ -0.91
CKS1BP1-201ENST00000555221 SPINT1O43278 529 aa9.38□□□□□ -0.91
CKS1BP1-201ENST00000555221 RNF144AP50876 292 aaPredicted RBP9.38□□□□□ -0.91
CKS1BP1-201ENST00000555221 GNASQ5JWF2 1037 aa9.38□□□□□ -0.91
CKS1BP1-201ENST00000555221 SLC27A3Q5K4L6 730 aa9.38□□□□□ -0.91
CKS1BP1-201ENST00000555221 TMEM214Q6NUQ4 689 aaKnown RBP9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms