RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 TTC21AQ8NDW8 1320 aa6.89□□□□□ -1.31
LIMA1-215ENST00000552823 ATP5J2-PTCD1G3V325 749 aa6.89□□□□□ -1.31
LIMA1-215ENST00000552823 SSFA2P28290 1259 aa6.89□□□□□ -1.31
LIMA1-215ENST00000552823 PLEKHO1Q53GL0 409 aaPredicted RBP6.89□□□□□ -1.31
LIMA1-215ENST00000552823 BMP2KLQ5H9B9 411 aa6.89□□□□□ -1.31
LIMA1-215ENST00000552823 INTS3Q68E01 1043 aaKnown RBP6.89□□□□□ -1.31
LIMA1-215ENST00000552823 UNC5CLQ8IV45 518 aa6.89□□□□□ -1.31
LIMA1-215ENST00000552823 NFATC2IPQ8NCF5 419 aa6.89□□□□□ -1.31
LIMA1-215ENST00000552823 SRCIN1Q9C0H9 1055 aa6.89□□□□□ -1.31
LIMA1-215ENST00000552823 SBNO1A3KN83 1393 aa6.88□□□□□ -1.31
LIMA1-215ENST00000552823 TTC22Q5TAA0 569 aa6.88□□□□□ -1.31
LIMA1-215ENST00000552823 RPAP2Q8IXW5 612 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-215ENST00000552823 IP6K1Q92551 441 aa6.88□□□□□ -1.31
LIMA1-215ENST00000552823 NEURL4Q96JN8 1562 aa6.88□□□□□ -1.31
LIMA1-215ENST00000552823 SPATA31D1Q6ZQQ2 1576 aa6.88□□□□□ -1.31
LIMA1-215ENST00000552823 NEK4P51957 841 aa6.88□□□□□ -1.31
LIMA1-215ENST00000552823 RIC3Q7Z5B4 369 aa6.88□□□□□ -1.31
LIMA1-215ENST00000552823 CHMP5Q9NZZ3 219 aa6.88□□□□□ -1.31
LIMA1-215ENST00000552823 NDUFB9Q9Y6M9 179 aa6.88□□□□□ -1.31
LIMA1-215ENST00000552823 CCT4P50991 539 aaKnown RBP6.88□□□□□ -1.31
LIMA1-215ENST00000552823 CASC1Q6TDU7 716 aa6.88□□□□□ -1.31
LIMA1-215ENST00000552823 LRRCC1Q9C099 1032 aa6.88□□□□□ -1.31
LIMA1-215ENST00000552823 USP44Q9H0E7 712 aa6.88□□□□□ -1.31
LIMA1-215ENST00000552823 CCDC8Q9H0W5 538 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-215ENST00000552823 MAP3K2Q9Y2U5 619 aa6.88□□□□□ -1.31
LIMA1-215ENST00000552823 DLC1Q96QB1 1528 aa6.87□□□□□ -1.31
LIMA1-215ENST00000552823 IGSF1Q8N6C5 1336 aa6.87□□□□□ -1.31
LIMA1-215ENST00000552823 RTL1A6NKG5 1358 aa6.87□□□□□ -1.31
LIMA1-215ENST00000552823 PIK3R4Q99570 1358 aa6.87□□□□□ -1.31
LIMA1-215ENST00000552823 CPA1P15085 419 aa6.87□□□□□ -1.31
LIMA1-215ENST00000552823 MCM4P33991 863 aa6.87□□□□□ -1.31
LIMA1-215ENST00000552823 PDE1AP54750 535 aa6.87□□□□□ -1.31
LIMA1-215ENST00000552823 ZGPATQ8N5A5 531 aaKnown RBP6.87□□□□□ -1.31
LIMA1-215ENST00000552823 CDK12Q9NYV4 1490 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-215ENST00000552823 AGLP35573 1532 aa6.87□□□□□ -1.31
LIMA1-215ENST00000552823 TRAK2O60296 914 aa6.87□□□□□ -1.31
LIMA1-215ENST00000552823 PKP1Q13835 747 aa6.87□□□□□ -1.31
LIMA1-215ENST00000552823 SYTL4Q96C24 671 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-215ENST00000552823 SPG7Q9UQ90 795 aa6.87□□□□□ -1.31
LIMA1-215ENST00000552823 KCNJ4P48050 445 aa6.86□□□□□ -1.31
LIMA1-215ENST00000552823 CWC27Q6UX04 472 aaKnown RBP6.86□□□□□ -1.31
LIMA1-215ENST00000552823 DNAAF4Q8WXU2 420 aa6.86□□□□□ -1.31
LIMA1-215ENST00000552823 TNPO1Q92973 898 aaKnown RBP6.86□□□□□ -1.31
LIMA1-215ENST00000552823 EIF5BO60841 1220 aaKnown RBP6.86□□□□□ -1.31
LIMA1-215ENST00000552823 PPFIA3O75145 1194 aa6.86□□□□□ -1.31
LIMA1-215ENST00000552823 GNAI3P08754 354 aa6.86□□□□□ -1.31
LIMA1-215ENST00000552823 EIF4A1P60842 406 aaKnown RBP6.86□□□□□ -1.31
LIMA1-215ENST00000552823 MCTP1Q6DN14 999 aa6.86□□□□□ -1.31
LIMA1-215ENST00000552823 PANK2Q9BZ23 570 aa6.86□□□□□ -1.31
LIMA1-215ENST00000552823 CEP170BQ9Y4F5 1589 aaPredicted RBP6.86□□□□□ -1.31
LIMA1-215ENST00000552823 FAM177BA6PVY3 158 aa6.86□□□□□ -1.31
LIMA1-215ENST00000552823 RNMTO43148 476 aaKnown RBP6.86□□□□□ -1.31
LIMA1-215ENST00000552823 MX1P20591 662 aa6.86□□□□□ -1.31
LIMA1-215ENST00000552823 TOM1L2Q6ZVM7 507 aa6.86□□□□□ -1.31
LIMA1-215ENST00000552823 MAP3K5Q99683 1374 aa6.86□□□□□ -1.31
LIMA1-215ENST00000552823 OVOS2A0A0J9YW53 1432 aa6.86□□□□□ -1.31
LIMA1-215ENST00000552823 OVOS2Q6IE36 1432 aa6.86□□□□□ -1.31
LIMA1-215ENST00000552823 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-215ENST00000552823 TCEANC2Q96MN5 208 aa6.85□□□□□ -1.31
LIMA1-215ENST00000552823 MYD88Q99836 296 aa6.85□□□□□ -1.31
LIMA1-215ENST00000552823 PALD1Q9ULE6 856 aa6.85□□□□□ -1.31
LIMA1-215ENST00000552823 USP16Q9Y5T5 823 aa6.85□□□□□ -1.31
LIMA1-215ENST00000552823 PTPRCP08575 1304 aa6.85□□□□□ -1.31
LIMA1-215ENST00000552823 MED14O60244 1454 aa6.85□□□□□ -1.31
LIMA1-215ENST00000552823 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-215ENST00000552823 K7ELQ4 463 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-215ENST00000552823 ATP8B2P98198 1209 aa6.85□□□□□ -1.31
LIMA1-215ENST00000552823 COPS6Q7L5N1 327 aa6.85□□□□□ -1.31
LIMA1-215ENST00000552823 TTC5Q8N0Z6 440 aa6.85□□□□□ -1.31
LIMA1-215ENST00000552823 MPNDQ8N594 471 aa6.85□□□□□ -1.31
LIMA1-215ENST00000552823 KCNH5Q8NCM2 988 aa6.85□□□□□ -1.31
LIMA1-215ENST00000552823 EDC3Q96F86 508 aaKnown RBP6.85□□□□□ -1.31
LIMA1-215ENST00000552823 ANTXR1Q9H6X2 564 aa6.85□□□□□ -1.31
LIMA1-215ENST00000552823 PRDM11Q9NQV5 511 aa6.85□□□□□ -1.31
LIMA1-215ENST00000552823 CRB1P82279 1406 aa6.84□□□□□ -1.31
LIMA1-215ENST00000552823 SOS1Q07889 1333 aaPredicted RBP6.84□□□□□ -1.31
LIMA1-215ENST00000552823 TATP17735 454 aaPredicted RBP6.84□□□□□ -1.31
LIMA1-215ENST00000552823 EVA1CP58658 441 aa6.84□□□□□ -1.31
LIMA1-215ENST00000552823 KIF2CQ99661 725 aa6.84□□□□□ -1.31
LIMA1-215ENST00000552823 BOLA2Q9H3K6 86 aa6.84□□□□□ -1.31
LIMA1-215ENST00000552823 GDPD2Q9HCC8 539 aa6.84□□□□□ -1.31
LIMA1-215ENST00000552823 CDC42BPGQ6DT37 1551 aa6.84□□□□□ -1.31
LIMA1-215ENST00000552823 ARHGEF25Q86VW2 580 aa6.84□□□□□ -1.31
LIMA1-215ENST00000552823 XAGE3Q8WTP9 111 aa6.84□□□□□ -1.31
LIMA1-215ENST00000552823 USP26Q9BXU7 913 aa6.84□□□□□ -1.31
LIMA1-215ENST00000552823 IL25Q9H293 177 aa6.84□□□□□ -1.31
LIMA1-215ENST00000552823 NAP1L2Q9ULW6 460 aaPredicted RBP6.84□□□□□ -1.31
LIMA1-215ENST00000552823 RIMS1Q86UR5 1692 aaKnown RBP6.84□□□□□ -1.31
LIMA1-215ENST00000552823 ERC2O15083 957 aa6.84□□□□□ -1.32
LIMA1-215ENST00000552823 FOSBP53539 338 aa6.84□□□□□ -1.32
LIMA1-215ENST00000552823 AACSQ86V21 672 aa6.84□□□□□ -1.32
LIMA1-215ENST00000552823 RHPN1Q8TCX5 695 aa6.84□□□□□ -1.32
LIMA1-215ENST00000552823 ZNF496Q96IT1 587 aaPredicted RBP6.84□□□□□ -1.32
LIMA1-215ENST00000552823 ZBTB3Q9H5J0 574 aa6.84□□□□□ -1.32
LIMA1-215ENST00000552823 DDX49Q9Y6V7 483 aaKnown RBP6.84□□□□□ -1.32
LIMA1-215ENST00000552823 NRXN3Q9Y4C0 1643 aa6.84□□□□□ -1.32
LIMA1-215ENST00000552823 ADGRB2O60241 1585 aa6.83□□□□□ -1.32
LIMA1-215ENST00000552823 IFIT2P09913 472 aaKnown RBP6.83□□□□□ -1.32
LIMA1-215ENST00000552823 CABP4P57796 275 aa6.83□□□□□ -1.32
LIMA1-215ENST00000552823 C19orf44Q9H6X5 657 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 126.3 ms